Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq85 235 8e-57
seq54 118 2e-21
seq82 89.7 8e-13
seq11 86.0 9e-12
>seq85
Length=66049
Score = 235 bits (260), Expect = 8e-57
Identities = 602/902 (67%), Gaps = 31/902 (3%)
Strand=Plus/Plus
Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054
|| || ||||||| ||| || || || ||| |||||||||| ||||| |||| || ||
Sbjct 2633 CTCTTCCCCATCAAGTACCACGAGATCTGGCAAATGTACAAGAAGGCCGAGGCTTCTTTC 2692
Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114
||||| | ||| ||| | |||||||||||||| || |||| ||| | | || |||
Sbjct 2693 TGGACCGCCGAGGAGATTGATCTGTCCAAGGATCTCCACGACTGGAACAACCGCATGAAC 2752
Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174
|| |||| ||||| || ||||| |||| |||||||||| ||| || || |||
Sbjct 2753 AAAGACGAGCAGTTCTTTATCTCCCACATCCTGGCTTTCTTTGCCGCCTCTGACGGTATC 2812
Query 125175 GTCAACGACAA-TCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTG 125233
|||||||| || | ||||| || ||||| ||| | ||||| |||| ||
Sbjct 2813 GTCAACGAGAACTTGGTTGA-GCGTTTCTCCGCCGAGGTCCAGATTCCCGAGGCCCGCTG 2871
Query 125234 CTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293
|||||| || ||||| |||||||| || ||| | ||||| || | ||||| || ||
Sbjct 2872 CTTTTATGGTTTCCAGATCATGATGGAAAACATTCACTCCGAGACCTACTCGCTGCTCAT 2931
Query 125294 TGACATGTACATTCGCGATC---CGCAACGTAAACACATGCTCTTTAACGCAATCGACAC 125350
||| | ||||| || | | || ||| || || || ||||| || || ||
Sbjct 2932 TGATACCTACATCAAGGAGCCCGCCCAGCGTTCCTAC---CTGTTCAACGCCATTGATAC 2988
Query 125351 GGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTC 125410
| || | || || |||||| | |||| | |||||||| ||| | ||||
Sbjct 2989 TATTCCCTGCATTCGCCGCAAGGCTGACTGGGCCCTGAAGTGGATCGCCGACAAGGAGTC 3048
Query 125411 TTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG 125470
| | | ||| | | || || || || ||||| || ||||| |||||||| ||||||
Sbjct 3049 TACCTTTGCCCAGCGTCTCGTTGCCTTTGCCGCTGTCGAGGGTATCTTCTTCTCGGGTGC 3108
Query 125471 TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAA 125530
|||||| ||||||| ||||| ||||| || |||||||| || ||||| | ||
Sbjct 3109 TTTTGCCTCCATCTTCTGGCTGCGCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAA 3168
Query 125531 CGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGT-TTCGCA 125589
|||| | || || || || |||||||| ||| ||||||||| || || | || ||
Sbjct 3169 CGAGCTGATCTCCCGTGATGAGGGCCTTCACACTGACTTTGCTTGCCTGCTCTACTCCCA 3228
Query 125590 AC-TATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGAT 125648
| || | | ||| | ||| | | | ||| ||| ||||| | ||||||
Sbjct 3229 CCTTAACAACCGCCCCA--GCA-AGCAACTGAT--TGAGGACATCA------TCACCGAT 3277
Query 125649 GCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATG 125708
|| || || || | ||||| | || || |||| || | || ||||||||
Sbjct 3278 GCTGTTGCTATTGAGAAGGAGTTCTTGACTGAGGCCCTGCCCTGTGCCCTGCTTGGCATG 3337
Query 125709 AACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG 125768
||| | | || ||| ||||| || ||||| || || ||||| ||| |
Sbjct 3338 AACGCCGACCTCATGAAGACCTACATTGAATTTGTCGCCGACCGTCTCCTG---ATGGCC 3394
Query 125769 ATTGGC--CG-CAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCA 125825
| ||| || |||| | ||||| |||| || |||||||| || ||| | ||| ||
Sbjct 3395 CTCGGCAACGACAAGGTCTACAAGGCCAGCAACCCCTTTGACTTTATGGAGAACATCTCG 3454
Query 125826 CTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC--AAACGCTACGGTG 125883
|| | || ||||||||||| ||||||||| ||| ||| ||| ||| || |||||
Sbjct 3455 CTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGCCGACTACCAAAAGGC--CGGTG 3512
Query 125884 TC 125885
||
Sbjct 3513 TC 3514
>seq54
Length=76171
Score = 118 bits (130), Expect = 2e-21
Identities = 302/457 (66%), Gaps = 2/457 (0%)
Strand=Plus/Plus
Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923
|| |||||| ||||| ||||| || || || || ||| | || ||||| | || ||
Sbjct 18249 CGTTACGTTGACCAGGGTGGCAACAAGCGTCCTGGTGCTTTTGCTATCTACCTCGAGCCG 18308
Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983
||||||||||| |||||||| || |||| | ||||| || ||| ||||| |
Sbjct 18309 TGGCACGCGGATGTTTTTGAGTTCCTCGATCTCCGCAAGAATCACGGCAAAGAAGAAGTC 18368
Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043
|| ||| | || | || || || ||| | || ||| | ||||||||||| || |
Sbjct 18369 CGTGCCCGTGATCTTTTCCTGGCTCTGTGGATCCCTGATCTTTTCATGAAGCGTGTTGAA 18428
Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103
| | | | |||| || ||||||||| | || || |||||| | || || |
Sbjct 18429 AAGAACGCCGAGTGGACTCTTATGTGCCCCAATGAGTGCCCTGGTCTGGCTGACTGTTAC 18488
Query 97104 GGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACG 97162
||||| ||||| ||||| |||| | || || | ||||| || || |||
Sbjct 18489 GGCGATGAGTTCGAGGCATTGTACGAGAAGTATGAAAAGGAGGGTCGTGGTCGACTGAC- 18547
Query 97163 AGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCC 97222
|| | || | | | |||||| | || ||| || |||||| |||||||| | ||
Sbjct 18548 TCTCAAAGCCCAAAAGCTGTGGTATGCTATCCTGGAAGCTCAGACTGAGACTGGTAACCC 18607
Query 97223 GTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCAT 97282
|| ||| || |||||||| | || ||||| || ||||| || |||| || ||
Sbjct 18608 GTTCATGCTGTACAAGGACCACTGCAACCGCAAGAGTAACCAGAAGAACCTGGGTACTAT 18667
Query 97283 CAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319
| ||||||| |||||||| || ||| | || |||
Sbjct 18668 CCGCAGCTCCAACCTGTGCACTGAGATTATTGAATAC 18704
>seq82
Length=67401
Score = 89.7 bits (98), Expect = 8e-13
Identities = 208/314 (66%), Gaps = 0/314 (0%)
Strand=Plus/Minus
Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161
|||||| | ||||| | | | |||||||| | |||| |||||| || || |||||
Sbjct 5083 TTGCGGAAGAAGATCATGGCACCACGAGGACCACGCAGAGACTTGTGGGTGGTGGTGGTG 5024
Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221
|||||||| ||||||||||| ||| ||||| | | || |||| |||| |||
Sbjct 5023 ACAATGTCGGCGTACTCAAAGGGCGAAGGGATGACGCCGGCAGCGATCAGACCCGAGATG 4964
Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA 127281
|| || || ||| |||| || ||| || | | ||||||||||| || | || |
Sbjct 4963 TGGGCCATGTCGACCATGAGGTAGGCACCAACAGAGTCGGCAATCTCACGCATGCGCTTG 4904
Query 127282 TAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGA 127341
||||| | | | || ||| ||||||||| | | | | | || ||| ||
Sbjct 4903 TAGTCAATGAGACGGCAGTAGGCCGAGGTGCCGGCAACCAGAACCTTGGGACGGAACAGG 4844
Query 127342 TTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTAC 127401
|||| ||| || || | | ||||||| || || |||| | |||| || |||
Sbjct 4843 ATGGCGTTCTTAGCCAGGGTATCGTAGTCGATCAGGCCGGTCTCAAGATCGACGCGGTAG 4784
Query 127402 GGCATGCTTTCGAA 127415
|||||| | |||||
Sbjct 4783 GGCATGGTCTCGAA 4770
>seq11
Length=131135
Score = 86.0 bits (94), Expect = 9e-12
Identities = 156/223 (70%), Gaps = 4/223 (2%)
Strand=Plus/Minus
Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126
||||| |||| || ||||| || || |||||| | |||| ||| || ||||||| ||
Sbjct 15079 GGCGACTTGGGTCCTGTGTATGGCTTTCAGTGGCGTCACTTTGGCGCCGAGTATGTTGA- 15021
Query 70127 TGCG-AGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCT 70185
|||| |||| || || |||| |||||||||||||| || | || | ||| |
Sbjct 15020 TGCGCAGACGGATTACACGGGGCAGGGTGTTGATCAGCTGGCGGAGGTCGTGCACAAATT 14961
Query 70186 CAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCA 70245
| ||| || || || || ||||| || | | | |||||||| || |||||| |
Sbjct 14960 AAGGACGAACCCGTATGACCGGCGGATCATACTATCGGCGTGGAATCCGGCGGATTTGAA 14901
Query 70246 CCAAATGGCACTACCACCGTGTCA-CTGTTTGGCTCAGTTTTA 70287
| ||||| | || |||||||| ||||| || ||||||||
Sbjct 14900 GAAGATGGCGTTGCCGCCGTGTCATATGTTT-GCGCAGTTTTA 14859
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741047556107320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |