Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq85 235 8e-57 seq54 118 2e-21 seq82 89.7 8e-13 seq11 86.0 9e-12 >seq85 Length=66049 Score = 235 bits (260), Expect = 8e-57 Identities = 602/902 (67%), Gaps = 31/902 (3%) Strand=Plus/Plus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 || || ||||||| ||| || || || ||| |||||||||| ||||| |||| || || Sbjct 2633 CTCTTCCCCATCAAGTACCACGAGATCTGGCAAATGTACAAGAAGGCCGAGGCTTCTTTC 2692 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||| | ||| ||| | |||||||||||||| || |||| ||| | | || ||| Sbjct 2693 TGGACCGCCGAGGAGATTGATCTGTCCAAGGATCTCCACGACTGGAACAACCGCATGAAC 2752 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || |||| ||||| || ||||| |||| |||||||||| ||| || || ||| Sbjct 2753 AAAGACGAGCAGTTCTTTATCTCCCACATCCTGGCTTTCTTTGCCGCCTCTGACGGTATC 2812 Query 125175 GTCAACGACAA-TCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTG 125233 |||||||| || | ||||| || ||||| ||| | ||||| |||| || Sbjct 2813 GTCAACGAGAACTTGGTTGA-GCGTTTCTCCGCCGAGGTCCAGATTCCCGAGGCCCGCTG 2871 Query 125234 CTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 |||||| || ||||| |||||||| || ||| | ||||| || | ||||| || || Sbjct 2872 CTTTTATGGTTTCCAGATCATGATGGAAAACATTCACTCCGAGACCTACTCGCTGCTCAT 2931 Query 125294 TGACATGTACATTCGCGATC---CGCAACGTAAACACATGCTCTTTAACGCAATCGACAC 125350 ||| | ||||| || | | || ||| || || || ||||| || || || Sbjct 2932 TGATACCTACATCAAGGAGCCCGCCCAGCGTTCCTAC---CTGTTCAACGCCATTGATAC 2988 Query 125351 GGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTC 125410 | || | || || |||||| | |||| | |||||||| ||| | |||| Sbjct 2989 TATTCCCTGCATTCGCCGCAAGGCTGACTGGGCCCTGAAGTGGATCGCCGACAAGGAGTC 3048 Query 125411 TTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG 125470 | | | ||| | | || || || || ||||| || ||||| |||||||| |||||| Sbjct 3049 TACCTTTGCCCAGCGTCTCGTTGCCTTTGCCGCTGTCGAGGGTATCTTCTTCTCGGGTGC 3108 Query 125471 TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAA 125530 |||||| ||||||| ||||| ||||| || |||||||| || ||||| | || Sbjct 3109 TTTTGCCTCCATCTTCTGGCTGCGCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAA 3168 Query 125531 CGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGT-TTCGCA 125589 |||| | || || || || |||||||| ||| ||||||||| || || | || || Sbjct 3169 CGAGCTGATCTCCCGTGATGAGGGCCTTCACACTGACTTTGCTTGCCTGCTCTACTCCCA 3228 Query 125590 AC-TATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGAT 125648 | || | | ||| | ||| | | | ||| ||| ||||| | |||||| Sbjct 3229 CCTTAACAACCGCCCCA--GCA-AGCAACTGAT--TGAGGACATCA------TCACCGAT 3277 Query 125649 GCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATG 125708 || || || || | ||||| | || || |||| || | || |||||||| Sbjct 3278 GCTGTTGCTATTGAGAAGGAGTTCTTGACTGAGGCCCTGCCCTGTGCCCTGCTTGGCATG 3337 Query 125709 AACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG 125768 ||| | | || ||| ||||| || ||||| || || ||||| ||| | Sbjct 3338 AACGCCGACCTCATGAAGACCTACATTGAATTTGTCGCCGACCGTCTCCTG---ATGGCC 3394 Query 125769 ATTGGC--CG-CAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCA 125825 | ||| || |||| | ||||| |||| || |||||||| || ||| | ||| || Sbjct 3395 CTCGGCAACGACAAGGTCTACAAGGCCAGCAACCCCTTTGACTTTATGGAGAACATCTCG 3454 Query 125826 CTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC--AAACGCTACGGTG 125883 || | || ||||||||||| ||||||||| ||| ||| ||| ||| || ||||| Sbjct 3455 CTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGCCGACTACCAAAAGGC--CGGTG 3512 Query 125884 TC 125885 || Sbjct 3513 TC 3514 >seq54 Length=76171 Score = 118 bits (130), Expect = 2e-21 Identities = 302/457 (66%), Gaps = 2/457 (0%) Strand=Plus/Plus Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923 || |||||| ||||| ||||| || || || || ||| | || ||||| | || || Sbjct 18249 CGTTACGTTGACCAGGGTGGCAACAAGCGTCCTGGTGCTTTTGCTATCTACCTCGAGCCG 18308 Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983 ||||||||||| |||||||| || |||| | ||||| || ||| ||||| | Sbjct 18309 TGGCACGCGGATGTTTTTGAGTTCCTCGATCTCCGCAAGAATCACGGCAAAGAAGAAGTC 18368 Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043 || ||| | || | || || || ||| | || ||| | ||||||||||| || | Sbjct 18369 CGTGCCCGTGATCTTTTCCTGGCTCTGTGGATCCCTGATCTTTTCATGAAGCGTGTTGAA 18428 Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103 | | | | |||| || ||||||||| | || || |||||| | || || | Sbjct 18429 AAGAACGCCGAGTGGACTCTTATGTGCCCCAATGAGTGCCCTGGTCTGGCTGACTGTTAC 18488 Query 97104 GGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACG 97162 ||||| ||||| ||||| |||| | || || | ||||| || || ||| Sbjct 18489 GGCGATGAGTTCGAGGCATTGTACGAGAAGTATGAAAAGGAGGGTCGTGGTCGACTGAC- 18547 Query 97163 AGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCC 97222 || | || | | | |||||| | || ||| || |||||| |||||||| | || Sbjct 18548 TCTCAAAGCCCAAAAGCTGTGGTATGCTATCCTGGAAGCTCAGACTGAGACTGGTAACCC 18607 Query 97223 GTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCAT 97282 || ||| || |||||||| | || ||||| || ||||| || |||| || || Sbjct 18608 GTTCATGCTGTACAAGGACCACTGCAACCGCAAGAGTAACCAGAAGAACCTGGGTACTAT 18667 Query 97283 CAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319 | ||||||| |||||||| || ||| | || ||| Sbjct 18668 CCGCAGCTCCAACCTGTGCACTGAGATTATTGAATAC 18704 >seq82 Length=67401 Score = 89.7 bits (98), Expect = 8e-13 Identities = 208/314 (66%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 |||||| | ||||| | | | |||||||| | |||| |||||| || || ||||| Sbjct 5083 TTGCGGAAGAAGATCATGGCACCACGAGGACCACGCAGAGACTTGTGGGTGGTGGTGGTG 5024 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221 |||||||| ||||||||||| ||| ||||| | | || |||| |||| ||| Sbjct 5023 ACAATGTCGGCGTACTCAAAGGGCGAAGGGATGACGCCGGCAGCGATCAGACCCGAGATG 4964 Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA 127281 || || || ||| |||| || ||| || | | ||||||||||| || | || | Sbjct 4963 TGGGCCATGTCGACCATGAGGTAGGCACCAACAGAGTCGGCAATCTCACGCATGCGCTTG 4904 Query 127282 TAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGA 127341 ||||| | | | || ||| ||||||||| | | | | | || ||| || Sbjct 4903 TAGTCAATGAGACGGCAGTAGGCCGAGGTGCCGGCAACCAGAACCTTGGGACGGAACAGG 4844 Query 127342 TTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTAC 127401 |||| ||| || || | | ||||||| || || |||| | |||| || ||| Sbjct 4843 ATGGCGTTCTTAGCCAGGGTATCGTAGTCGATCAGGCCGGTCTCAAGATCGACGCGGTAG 4784 Query 127402 GGCATGCTTTCGAA 127415 |||||| | ||||| Sbjct 4783 GGCATGGTCTCGAA 4770 >seq11 Length=131135 Score = 86.0 bits (94), Expect = 9e-12 Identities = 156/223 (70%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 ||||| |||| || ||||| || || |||||| | |||| ||| || ||||||| || Sbjct 15079 GGCGACTTGGGTCCTGTGTATGGCTTTCAGTGGCGTCACTTTGGCGCCGAGTATGTTGA- 15021 Query 70127 TGCG-AGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCT 70185 |||| |||| || || |||| |||||||||||||| || | || | ||| | Sbjct 15020 TGCGCAGACGGATTACACGGGGCAGGGTGTTGATCAGCTGGCGGAGGTCGTGCACAAATT 14961 Query 70186 CAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCA 70245 | ||| || || || || ||||| || | | | |||||||| || |||||| | Sbjct 14960 AAGGACGAACCCGTATGACCGGCGGATCATACTATCGGCGTGGAATCCGGCGGATTTGAA 14901 Query 70246 CCAAATGGCACTACCACCGTGTCA-CTGTTTGGCTCAGTTTTA 70287 | ||||| | || |||||||| ||||| || |||||||| Sbjct 14900 GAAGATGGCGTTGCCGCCGTGTCATATGTTT-GCGCAGTTTTA 14859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741047556107320