Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq30 96.9 3e-15
seq59 82.4 6e-11
>seq30
Length=92847
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892
|||| |||| ||||||||||| || || ||||| || |||| || |||| ||
Sbjct 12684 ACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTACGACCGTCTTCA 12625
Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952
||||| || || ||| |||| || | |||||||||| ||| | |||||| ||||| |
Sbjct 12624 AGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGA 12565
Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGG-CTCCGTTTCGACGGTAATGGTTTT 19011
|| || || || | | | | ||| || | ||| ||| || | ||||||||| ||
Sbjct 12564 ATCTTGGACTTGACATTGTCAATAGTGTC-CGAGGTCTCAACCTCCAGGGTAATGGTCTT 12506
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| || | ||| |||||||| ||||||||
Sbjct 12505 GCCAGTCAGAGTCTTGACAAAGATTTGCAT 12476
>seq59
Length=73848
Score = 82.4 bits (90), Expect = 6e-11
Identities = 136/194 (70%), Gaps = 2/194 (1%)
Strand=Plus/Plus
Query 18852 CCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAA 18911
|||| || |||||||| ||||||| || | | ||||||||||| || || ||| | |
Sbjct 15444 CCTTCTGGATATTGTAGTCCGCCAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCAAAGA 15503
Query 18912 TAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGC 18971
| || | |||||| ||| || | |||||| ||||| || || || || | |
Sbjct 15504 TCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 15563
Query 18972 CGACAGTATCGCCAGG-CTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACA 19030
||| || || | ||| ||| |||| |||||| || ||||| |||| || |||||
Sbjct 15564 CGATGGTGTC-CGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTTAGGGTCTTGACG 15622
Query 19031 AAAATTTGCATTTT 19044
||||| ||||| ||
Sbjct 15623 AAAATCTGCATCTT 15636
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414566448874258
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |