Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq30 96.9 3e-15 seq59 82.4 6e-11 >seq30 Length=92847 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| |||| ||||||||||| || || ||||| || |||| || |||| || Sbjct 12684 ACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTACGACCGTCTTCA 12625 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||| || || ||| |||| || | |||||||||| ||| | |||||| ||||| | Sbjct 12624 AGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGA 12565 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGG-CTCCGTTTCGACGGTAATGGTTTT 19011 || || || || | | | | ||| || | ||| ||| || | ||||||||| || Sbjct 12564 ATCTTGGACTTGACATTGTCAATAGTGTC-CGAGGTCTCAACCTCCAGGGTAATGGTCTT 12506 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | ||| |||||||| |||||||| Sbjct 12505 GCCAGTCAGAGTCTTGACAAAGATTTGCAT 12476 >seq59 Length=73848 Score = 82.4 bits (90), Expect = 6e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 18852 CCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAA 18911 |||| || |||||||| ||||||| || | | ||||||||||| || || ||| | | Sbjct 15444 CCTTCTGGATATTGTAGTCCGCCAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCAAAGA 15503 Query 18912 TAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGC 18971 | || | |||||| ||| || | |||||| ||||| || || || || | | Sbjct 15504 TCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 15563 Query 18972 CGACAGTATCGCCAGG-CTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACA 19030 ||| || || | ||| ||| |||| |||||| || ||||| |||| || ||||| Sbjct 15564 CGATGGTGTC-CGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTTAGGGTCTTGACG 15622 Query 19031 AAAATTTGCATTTT 19044 ||||| ||||| || Sbjct 15623 AAAATCTGCATCTT 15636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414566448874258