Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq30 140 7e-28
>seq30
Length=92847
Score = 140 bits (154), Expect = 7e-28
Identities = 161/214 (75%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || ||||| | ||||| || ||||| || || ||||| | || || | ||||||
Sbjct 12688 AAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTACGACCGTC 12629
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
||| || || |||||||||||||| || | ||| ||||| || || || || || || ||
Sbjct 12628 TTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTC 12569
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAG 104525
||||||||| | || ||||| || | || || | |||| || ||||| || ||||| |
Sbjct 12568 CTGAATCTTGGACTTGACATTGTCAATAGTGTC-CGAGGTCTCAACCTCCAGGGTAATGG 12510
Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|||| ||||| || || || ||||| || |||||
Sbjct 12509 TCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 12476
Score = 114 bits (126), Expect = 3e-20
Identities = 129/173 (75%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || |||||||| || ||||| | || || | ||||||||| || || ||||||
Sbjct 12127 GTGGACTCCTTCTGAATGTTGTAGTCCGCAAGGGTGCGACCGTCTTCAAGCTGCTTTCCA 12068
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|||||||| || | ||| ||||| || || || || || ||||| |||||||| | |||
Sbjct 12067 GCAAAAATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTATCTTGAATCTTGGATTTG 12008
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535
|| || || | ||| || | ||| ||||| || || || ||||| |||||
Sbjct 12007 ACGTTGTCGATGGTGTCTGACGATTCAACCTCGAGGGTGATGGTCTTGCCAGT 11955
Score = 105 bits (116), Expect = 2e-17
Identities = 146/202 (72%), Gaps = 2/202 (1%)
Strand=Plus/Minus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || ||||| | ||||| || |||||||| || ||||| | || || | ||||||
Sbjct 12460 AAGAACGAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCTGCCAGGGTACGACCGTC 12401
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
|| || || || || || ||||| || | ||| || ||||| || || ||||| || ||
Sbjct 12400 CTCCAGCTGCTTGCCTGCGAAAATCAGGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTC 12341
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAG 104525
||||||||| | || ||||| || | || || | ||| || || ||||| || || |
Sbjct 12340 CTGAATCTTGGACTTGACATTGTCAATAGTGTC-CGAGGACTCGACTTCTAGGGTGATGG 12282
Query 104526 TCTTACCAGTAAGTGTTTTTAC 104547
|||| || || || || || ||
Sbjct 12281 TCTTTCCGGTGAGGGTCTTGAC 12260
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151379856368956
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |