Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq30 140 7e-28 >seq30 Length=92847 Score = 140 bits (154), Expect = 7e-28 Identities = 161/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | ||||| || ||||| || || ||||| | || || | |||||| Sbjct 12688 AAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTACGACCGTC 12629 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| || || |||||||||||||| || | ||| ||||| || || || || || || || Sbjct 12628 TTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTC 12569 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAG 104525 ||||||||| | || ||||| || | || || | |||| || ||||| || ||||| | Sbjct 12568 CTGAATCTTGGACTTGACATTGTCAATAGTGTC-CGAGGTCTCAACCTCCAGGGTAATGG 12510 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| ||||| || || || ||||| || ||||| Sbjct 12509 TCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 12476 Score = 114 bits (126), Expect = 3e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || ||||| | || || | ||||||||| || || |||||| Sbjct 12127 GTGGACTCCTTCTGAATGTTGTAGTCCGCAAGGGTGCGACCGTCTTCAAGCTGCTTTCCA 12068 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||| ||||| || || || || || ||||| |||||||| | ||| Sbjct 12067 GCAAAAATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTATCTTGAATCTTGGATTTG 12008 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 || || || | ||| || | ||| ||||| || || || ||||| ||||| Sbjct 12007 ACGTTGTCGATGGTGTCTGACGATTCAACCTCGAGGGTGATGGTCTTGCCAGT 11955 Score = 105 bits (116), Expect = 2e-17 Identities = 146/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | ||||| || |||||||| || ||||| | || || | |||||| Sbjct 12460 AAGAACGAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCTGCCAGGGTACGACCGTC 12401 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || || ||||| || | ||| || ||||| || || ||||| || || Sbjct 12400 CTCCAGCTGCTTGCCTGCGAAAATCAGGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTC 12341 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAG 104525 ||||||||| | || ||||| || | || || | ||| || || ||||| || || | Sbjct 12340 CTGAATCTTGGACTTGACATTGTCAATAGTGTC-CGAGGACTCGACTTCTAGGGTGATGG 12282 Query 104526 TCTTACCAGTAAGTGTTTTTAC 104547 |||| || || || || || || Sbjct 12281 TCTTTCCGGTGAGGGTCTTGAC 12260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151379856368956