Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq15 170 3e-38 seq519 105 1e-18 >seq15 Length=121573 Score = 170 bits (188), Expect = 3e-38 Identities = 200/268 (75%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| || ||||| || || ||||||||||| ||||| Sbjct 21208 GCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACCAAGCCTGCTAT 21150 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| |||||||||||||| ||||||||| |||||| || |||| ||||||| Sbjct 21149 CCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCTGCCATGATCTACGAAGAGAC 21090 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| || ||| | || || | ||| || || || || || Sbjct 21089 CCGTGGTGTCCTCAAGTCTTTTCTCGAAGGTGTCATTCGTGACGCCGTCACTTACACTGA 21030 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| || ||||| ||||| | |||||||| |||| | ||||| Sbjct 21029 GCACGCCAAGCGCAAGACCGTTACCTCGTTGGATGTTGTCTATGCTCTGAAGAGACAAGG 20970 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || ||||| || ||||| Sbjct 20969 TCGCACCCTGTACGGTTTCGGTGGTTAA 20942 >seq519 Length=16622 Score = 105 bits (116), Expect = 1e-18 Identities = 82/95 (86%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| |||||| || ||||| || || || |||||||| |||| Sbjct 7535 CGCCAAGCGTCACCGCAAGAT-TCTTCGCGACAACATTCAGGGCATTACCAAGCCCGCTA 7477 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGT 16525 |||||||||| |||||||||||||| ||||||||| Sbjct 7476 TCCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGT 7442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074050716101