Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq54 194 2e-44
seq85 113 6e-20
>seq54
Length=76171
Score = 194 bits (214), Expect = 2e-44
Identities = 640/983 (65%), Gaps = 28/983 (3%)
Strand=Plus/Minus
Query 62891 GGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTC 62950
||| | ||| || || || || || || ||||||| || | | |||| || |||||
Sbjct 18749 GGCCAAAGAAGCAAGGTTGCAGACAGCAACCTCATCAGGAGCACAGTATTCAATAATCTC 18690
Query 62951 AGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 63010
|||||| || || | |||||| || | || | || |||||||| ||| ||
Sbjct 18689 AGTGCACAGGTTGGAGCTGCGGATAGTACCCAGGTTCTTCTGGTTACTCTTGCGGTTGCA 18630
Query 63011 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 63070
||||| || || ||||| || ||||||| ||| |||||| ||| | || || |
Sbjct 18629 GTGGTCCTTGTACAGCATGAACGGGTTACCAGTCTCAGTCTGAGCTTCCAGGATAGCATA 18570
Query 63071 CCAGACGACTCGAGCCTTTA---TTA-TAGATTTGTATC-TCCTTTCTCTTTCGTATAGT 63125
||| | | | || || | | | | || | | |||||| || | | | | ||
Sbjct 18569 CCACAGCTTTTGGGCTTTGAGAGTCAGTCGACCACGACCCTCCTTT-TCATACTTCTCGT 18511
Query 63126 GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA 63185
||||| |||||||| || || || | ||| ||||| || |||| ||
Sbjct 18510 ----ACAATGCCTCGAACTCATCGCCGTAACAGTCAGCCAGACCAGGGCACTCATTGGGG 18455
Query 63186 CACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAA 63245
||||| | | |||||| ||| | | || || ||||| || |||||||| |||||
Sbjct 18454 CACATAAGAGTCCACTCGGCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAC 18395
Query 63246 AGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCG 63305
||||| | || ||||| | || | ||| || || || |||||| ||||||
Sbjct 18394 AGAGCCAGGAAAAGATCACGGGCACGGACTTCTTCTTTGCCGTGATTCTTGCGGAGATCG 18335
Query 63306 AGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGT 63365
|||||| | | || ||| | |||||||| || | ||| || || | | | ||||| ||
Sbjct 18334 AGGAACTCAAAAACATCCGCGTGCCACGGCTCGAGGTAGATAGCAAAAGCACCAGGACGC 18275
Query 63366 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63425
||||| || ||||| || | ||| | ||| ||||| || | || | || ||| ||||
Sbjct 18274 TTGTTGCCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATAGGAACG 18215
Query 63426 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT--ATTAC 63483
|||||||| || |||| || || |||| || || ||| |||||||||| | |
Sbjct 18214 ATACCGTTCGAGGTACCGTTAGTGCCGGCAATGTAAGAACCAGTGGCACGAATGCGGTGC 18155
Query 63484 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGT 63543
|| || || || || || ||||| || ||||| | ||||| ||| | ||||
Sbjct 18154 ACGTT--CAGGCCAATACCACCCGCCATCTTGGAGATCATAGCGCAAGTTTTCAGAGTGT 18097
Query 63544 CATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 63603
||||||||||||| ||||| ||||| |||| | | || || || ||||| |||
Sbjct 18096 CATAGATACCCTCAATGCTGTCATCCTTCATATCCACGAGGAAGCACGAAGACAGTTG-- 18039
Query 63604 GACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63659
|| || ||| || || || || | || || || || || || || | ||
Sbjct 18038 --CGCCTGGGGAGTACCGGCGTTGAAAAGAGTTGGGGATGCATGAGTGAAGAACTTGCTC 17981
Query 63660 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGC 63718
|| | || ||||| ||||| | | || | ||| || | ||||| || ||
Sbjct 17980 GACATGAGGTTGTAGGTCTCCAGGACACGTTCAACATCATCACCCCAG-ATTCCAACAGC 17922
Query 63719 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTA 63778
|||||||| | |||||| ||||| | || ||||||||| || | |||| | |||
Sbjct 17921 AACACGCATGATCATGTGTTGAGGACGCTCGACGATCTTGCCGTCAAGCTTCAGGAGGTA 17862
Query 63779 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATA 63836
|| || | || || |||||||| || | ||| ||||| || || ||||| |
Sbjct 17861 TGAACGCTCAAGCGTCTTGAAACCAAAGTATTGGTAGTTGAAA--TCACGATCGTACACG 17804
Query 63837 ATAACCGAGTTGAGTTTATCCTT 63859
||| |||||| || | |||||
Sbjct 17803 ATAGCCGAGTCCAGCTCTTCCTT 17781
>seq85
Length=66049
Score = 113 bits (124), Expect = 6e-20
Identities = 352/543 (65%), Gaps = 8/543 (1%)
Strand=Plus/Minus
Query 33340 ATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 33399
|| || |||||||| || || || || ||||| || |||||||| ||||| || |||
Sbjct 3177 ATCAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGATG 3118
Query 33400 GAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCT 33459
|| || || | || || |||||||| || || || || |||||||||| || | ||
Sbjct 3117 GAGGCAAAAGCACCCGAGAAGAAGATACCCTCGACAGCGGCAAAGGCAACGAGACGCTGG 3058
Query 33460 CCATAACCGG---CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACA 33516
|| | | | |||| |||||||| | ||||| || ||||| |
Sbjct 3057 GCAAAGGTAGACTCCTTGTCGGCGATCCACTTCAGGGCCCAGTCAGCCTTGCGGCGAATG 2998
Query 33517 CAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAA 33576
|| || || || || ||||| || || || ||| | || || | ||
Sbjct 2997 CAGGGAATAGTATCAATGGCGTTGAACAGGTAGGAACGCTGGGCGGGCTCCTTGATGTAG 2938
Query 33577 GTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCG 33636
||||| || | || || | || || ||||||||||| || ||||| || ||
Sbjct 2937 GTATCAATGAGCAGCGAGTAGGTCTCGGAGTGAATGTTTTCCATCATGATCTGGAAACCA 2878
Query 33637 TAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCA 33696
|| || || | ||||||| |||||| || || | | || || || |||| || ||
Sbjct 2877 TAAAAGCAGCGGGCCTCGGGAATCTGGACCTCGGCGGAGAAACGCTCAACCAAGTTCTCG 2818
Query 33697 TTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG 33756
|| || || |||||| ||| ||||| || |||| | || ||||| | | |||
Sbjct 2817 TTGACGATACCGTCAGAGGCGGCAAAGAAAGCCAGGATGTGGGAGATAAAGAACTGCTCG 2758
Query 33757 TCTGGTGTT----AGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCAC 33812
||| |||| | || ||||| || | || ||| || || | ||| | || || |
Sbjct 2757 TCT-TTGTTCATGCGGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATCTCCTCGGC 2699
Query 33813 TGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGG 33872
||||| || || ||||| ||||| || ||||| | |||||| || | || | ||| ||
Sbjct 2698 GGTCCAGAAAGAAGCCTCGGCCTTCTTGTACATTTGCCAGATCTCGTGGTACTTGATGGG 2639
Query 33873 GAA 33875
|||
Sbjct 2638 GAA 2636
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622937411942120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |