Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq54 194 2e-44 seq85 113 6e-20 >seq54 Length=76171 Score = 194 bits (214), Expect = 2e-44 Identities = 640/983 (65%), Gaps = 28/983 (3%) Strand=Plus/Minus Query 62891 GGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTC 62950 ||| | ||| || || || || || || ||||||| || | | |||| || ||||| Sbjct 18749 GGCCAAAGAAGCAAGGTTGCAGACAGCAACCTCATCAGGAGCACAGTATTCAATAATCTC 18690 Query 62951 AGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 63010 |||||| || || | |||||| || | || | || |||||||| ||| || Sbjct 18689 AGTGCACAGGTTGGAGCTGCGGATAGTACCCAGGTTCTTCTGGTTACTCTTGCGGTTGCA 18630 Query 63011 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 63070 ||||| || || ||||| || ||||||| ||| |||||| ||| | || || | Sbjct 18629 GTGGTCCTTGTACAGCATGAACGGGTTACCAGTCTCAGTCTGAGCTTCCAGGATAGCATA 18570 Query 63071 CCAGACGACTCGAGCCTTTA---TTA-TAGATTTGTATC-TCCTTTCTCTTTCGTATAGT 63125 ||| | | | || || | | | | || | | |||||| || | | | | || Sbjct 18569 CCACAGCTTTTGGGCTTTGAGAGTCAGTCGACCACGACCCTCCTTT-TCATACTTCTCGT 18511 Query 63126 GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA 63185 ||||| |||||||| || || || | ||| ||||| || |||| || Sbjct 18510 ----ACAATGCCTCGAACTCATCGCCGTAACAGTCAGCCAGACCAGGGCACTCATTGGGG 18455 Query 63186 CACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAA 63245 ||||| | | |||||| ||| | | || || ||||| || |||||||| ||||| Sbjct 18454 CACATAAGAGTCCACTCGGCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAC 18395 Query 63246 AGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCG 63305 ||||| | || ||||| | || | ||| || || || |||||| |||||| Sbjct 18394 AGAGCCAGGAAAAGATCACGGGCACGGACTTCTTCTTTGCCGTGATTCTTGCGGAGATCG 18335 Query 63306 AGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGT 63365 |||||| | | || ||| | |||||||| || | ||| || || | | | ||||| || Sbjct 18334 AGGAACTCAAAAACATCCGCGTGCCACGGCTCGAGGTAGATAGCAAAAGCACCAGGACGC 18275 Query 63366 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63425 ||||| || ||||| || | ||| | ||| ||||| || | || | || ||| |||| Sbjct 18274 TTGTTGCCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATAGGAACG 18215 Query 63426 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT--ATTAC 63483 |||||||| || |||| || || |||| || || ||| |||||||||| | | Sbjct 18214 ATACCGTTCGAGGTACCGTTAGTGCCGGCAATGTAAGAACCAGTGGCACGAATGCGGTGC 18155 Query 63484 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGT 63543 || || || || || || ||||| || ||||| | ||||| ||| | |||| Sbjct 18154 ACGTT--CAGGCCAATACCACCCGCCATCTTGGAGATCATAGCGCAAGTTTTCAGAGTGT 18097 Query 63544 CATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 63603 ||||||||||||| ||||| ||||| |||| | | || || || ||||| ||| Sbjct 18096 CATAGATACCCTCAATGCTGTCATCCTTCATATCCACGAGGAAGCACGAAGACAGTTG-- 18039 Query 63604 GACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63659 || || ||| || || || || | || || || || || || || | || Sbjct 18038 --CGCCTGGGGAGTACCGGCGTTGAAAAGAGTTGGGGATGCATGAGTGAAGAACTTGCTC 17981 Query 63660 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGC 63718 || | || ||||| ||||| | | || | ||| || | ||||| || || Sbjct 17980 GACATGAGGTTGTAGGTCTCCAGGACACGTTCAACATCATCACCCCAG-ATTCCAACAGC 17922 Query 63719 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTA 63778 |||||||| | |||||| ||||| | || ||||||||| || | |||| | ||| Sbjct 17921 AACACGCATGATCATGTGTTGAGGACGCTCGACGATCTTGCCGTCAAGCTTCAGGAGGTA 17862 Query 63779 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATA 63836 || || | || || |||||||| || | ||| ||||| || || ||||| | Sbjct 17861 TGAACGCTCAAGCGTCTTGAAACCAAAGTATTGGTAGTTGAAA--TCACGATCGTACACG 17804 Query 63837 ATAACCGAGTTGAGTTTATCCTT 63859 ||| |||||| || | ||||| Sbjct 17803 ATAGCCGAGTCCAGCTCTTCCTT 17781 >seq85 Length=66049 Score = 113 bits (124), Expect = 6e-20 Identities = 352/543 (65%), Gaps = 8/543 (1%) Strand=Plus/Minus Query 33340 ATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 33399 || || |||||||| || || || || ||||| || |||||||| ||||| || ||| Sbjct 3177 ATCAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGATG 3118 Query 33400 GAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCT 33459 || || || | || || |||||||| || || || || |||||||||| || | || Sbjct 3117 GAGGCAAAAGCACCCGAGAAGAAGATACCCTCGACAGCGGCAAAGGCAACGAGACGCTGG 3058 Query 33460 CCATAACCGG---CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACA 33516 || | | | |||| |||||||| | ||||| || ||||| | Sbjct 3057 GCAAAGGTAGACTCCTTGTCGGCGATCCACTTCAGGGCCCAGTCAGCCTTGCGGCGAATG 2998 Query 33517 CAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAA 33576 || || || || || ||||| || || || ||| | || || | || Sbjct 2997 CAGGGAATAGTATCAATGGCGTTGAACAGGTAGGAACGCTGGGCGGGCTCCTTGATGTAG 2938 Query 33577 GTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCG 33636 ||||| || | || || | || || ||||||||||| || ||||| || || Sbjct 2937 GTATCAATGAGCAGCGAGTAGGTCTCGGAGTGAATGTTTTCCATCATGATCTGGAAACCA 2878 Query 33637 TAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCA 33696 || || || | ||||||| |||||| || || | | || || || |||| || || Sbjct 2877 TAAAAGCAGCGGGCCTCGGGAATCTGGACCTCGGCGGAGAAACGCTCAACCAAGTTCTCG 2818 Query 33697 TTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG 33756 || || || |||||| ||| ||||| || |||| | || ||||| | | ||| Sbjct 2817 TTGACGATACCGTCAGAGGCGGCAAAGAAAGCCAGGATGTGGGAGATAAAGAACTGCTCG 2758 Query 33757 TCTGGTGTT----AGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCAC 33812 ||| |||| | || ||||| || | || ||| || || | ||| | || || | Sbjct 2757 TCT-TTGTTCATGCGGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATCTCCTCGGC 2699 Query 33813 TGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGG 33872 ||||| || || ||||| ||||| || ||||| | |||||| || | || | ||| || Sbjct 2698 GGTCCAGAAAGAAGCCTCGGCCTTCTTGTACATTTGCCAGATCTCGTGGTACTTGATGGG 2639 Query 33873 GAA 33875 ||| Sbjct 2638 GAA 2636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622937411942120