Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq54 352 7e-92
seq188 93.3 1e-13
>seq54
Length=76171
Score = 352 bits (390), Expect = 7e-92
Identities = 1006/1530 (66%), Gaps = 30/1530 (2%)
Strand=Plus/Plus
Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606
||||| || || | ||||| | | ||| || || |||| | | || |||||||
Sbjct 17991 TTCACTCATGCATCCCCAACTCTTTTCAACGCCGGTACTCCCCAGGCGCAACTGTCTTCG 18050
Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666
||||| || | | |||||||| || ||| |||||||||| |||||| || || | |
Sbjct 18051 TGCTTCCTCGTGGATATGAAGGATGACAGCATTGAGGGTATCTATGACACTCTGAAAACT 18110
Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725
|| ||| | || ||||||| || || || ||||| | | || | ||| |||||||
Sbjct 18111 TGCGCTATGATCTCCAAGATGGCGGGTGGTATTGGCCTGAACG-TGCACCGCATTCGTGC 18169
Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784
|| | ||||||| |||||| || |||||| || | ||||| ||||| |
Sbjct 18170 CACTGGTTC-TTACATTGCCGGCACTAACGGTACCTCGAACGGTATCGTTCCTATGCTGC 18228
Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGT 363844
||||||| |||| ||||| | ||||| ||||||||||| ||||| || || |
Sbjct 18229 GTGTGTTCAACAACACTGCTCGTTACGTTGACCAGGGTGGCAACAAGCGTCCTGGTGCTT 18288
Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904
||||||| || |||||||| || || ||| |||||||||| || || ||||| || |
Sbjct 18289 TTGCTATCTACCTCGAGCCGTGGCACGCGGATGTTTTTGAGTTCCTCGATCTCCGCAAGA 18348
Query 363905 A-CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGAC 363963
| ||||| ||| || ||| | ||||| |||||||| ||| || || ||| | ||||
Sbjct 18349 ATCACGGCAAA-GAAGAAGTCCGTGCCCGTGATCTTTTCCTGGCTCTGTGGATCCCTGAT 18407
Query 363964 CATTTTATGAAGCGCGTGGAGGCAGGTAAGA--ATTGGTCACTCTTTTGCCCACACGAAT 364021
| ||| |||||||| || || | | | | | ||| | || | ||||| | || |
Sbjct 18408 CTTTTCATGAAGCGTGTTGAA--AAGAACGCCGAGTGGACTCTTATGTGCCCCAATGAGT 18465
Query 364022 GTCCAGGTCTTTCCGA-TGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAA 364080
| || ||||| | || ||| | || || || | | || | ||||| |||||||||
Sbjct 18466 GCCCTGGTCTGGCTGACTGT-TACGGCGATGAGTTCGAGGCATTGTACGAGAAGTATGAA 18524
Query 364081 TCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGAT 364140
|||||| | ||| ||| | || || ||||| |||| ||| ||| ||||
Sbjct 18525 AAGGAGGGTCGTGGTCGACTGACTCTCAAAGCCCAAAAGCTGTGGTATGCTATCCTGGAA 18584
Query 364141 TCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCC 364200
| |||| |||||| || | || | ||| ||||||| || ||||||||||||
Sbjct 18585 GCTCAGACTGAGACTGGTAACCCGTTCATGCTGTACAAGGACCACTGCAACCGCAAGAGT 18644
Query 364201 AACCAGCAGCACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATA 364259
|||||| || |||| ||||| | || |||| |||||| || || ||||||||||||||
Sbjct 18645 AACCAGAAGAACCTGGGTACTA-TCCGCAGCTCCAACCTGTGCACTGAGATTATTGAATA 18703
Query 364260 CACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT 364319
| ||||| || ||| ||| || || |||||||| || | || || || || ||| |
Sbjct 18704 CTGTGCTCCTGATGAGGTTGCTGTCTGCAACCTTGCTTCTTTGGCCCTCCCTGCCTTTAT 18763
Query 364320 ----------AAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATG 364369
|| | | |||| || ||| | || | || || ||| | ||
Sbjct 18764 TGACTACACCAACAACTCGTAC----GATTTCCATAAGCTGCACGAGGTCACCAAGGTTG 18819
Query 364370 CTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGC 364429
| | |||| || || | ||||| || | || || || ||||||| |
Sbjct 18820 TTGTTCGCAACCTGAACCGCATCATCGATGTCAACCACTACCCTGTTACTGAAGCATATA 18879
Query 364430 GTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTA 364489
|| |||||||| || || || ||| | ||||| ||||| || || |||| ||
Sbjct 18880 ACAGCAACATGCGTCACCGTCCCATCGGTGTCGGTGTTCAGGGTCTTGCCGACGCCTTCC 18939
Query 364490 TGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTG 364549
|| || ||| | ||||| ||| |||| || || || || | | ||||| |
Sbjct 18940 TGGCTCTGCGCATGCCCTTTGAGTCGGCTGAGGCCCGCCAGCTCAACACTCATATCTTCG 18999
Query 364550 AAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGT 364609
| || || || || || | || ||||| || | || | | |||| ||||
Sbjct 19000 AGACCATTTACCACGCTGCTCTTGAGGCCTCGTGCGAGATTGCTCAGAAGGAGGGCAAGT 19059
Query 364610 ACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATG 364669
|||| || || ||||| || ||| | || ||||| | | |||||||| | |||||||
Sbjct 19060 ACTCGACCTACGAGGGCTCGCCTGTGTCCCAGGGCATCCTGCAGTTTGACATGTGGAATG 19119
Query 364670 TCACGCCATCTGTCCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAGCATGGT 364728
|||| || || || ||| ||||| | || | | | | | ||| |||| |||
Sbjct 19120 TCACTCCCAGTGACCTCTGGGACTGGACCTCACTGAAGGAAC-AGATCAAGCAGCACGGT 19178
Query 364729 ACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGA 364788
| |||||||| | | |||||||||||||| || |||| | ||||| || ||
Sbjct 19179 ATCCGCAACTCTTTACTACTTGCGCCCATGCCCACCGCCAGTACTTCCCAGATTCTGGGC 19238
Query 364789 AACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGA 364848
|| ||||| |||||||| || | || ||| |||| ||||| || || | ||
Sbjct 19239 AATAACGAATGCTTCGAGCCCTACACCTCCAACATTTACCAGCGCCGTGTCCTAGCTGGC 19298
Query 364849 GAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGT 364908
|| || | ||| || || | || | || || |||| || |||||| |
Sbjct 19299 GAGTTCCAGGTCGTCAACCCCTGGCTGTTGCGTGACCTGGTTGACCTTGGCCTGTGGTCT 19358
Query 364909 GACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTT 364968
|| |||||||||| ||||| |||| |||||||| | || |||||||| | ||
Sbjct 19359 GATTCCATGAAGAACCGCATCATTGCCGACAATGGTTCAATTCAAAACATTCCCAGCATT 19418
Query 364969 CCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATT 365028
|| | || | ||| | | ||||| || |||||||| ||||| ||| || | |
Sbjct 19419 CCTGCTGACATCAAGGGTCTGTACAAGACTGTATGGGAGATTTCTCAGCGTACGGTTGTC 19478
Query 365029 GATATGGCGGCCGATCGCGGTGCTTTTATC 365058
| ||||| || ||||| ||||| ||||||
Sbjct 19479 CAGATGGCTGCTGATCGTGGTGCCTTTATC 19508
>seq188
Length=42393
Score = 93.3 bits (102), Expect = 1e-13
Identities = 133/185 (72%), Gaps = 2/185 (1%)
Strand=Plus/Minus
Query 65871 GTTACGAATCGTTCCGTCATAATTG-CACATATTATCTTCACTTGCCTTTACAAGACAAC 65929
|||||||| |||||||| || ||| ||| | |||||| ||||| || |||| ||
Sbjct 33196 GTTACGAACGGTTCCGTCGTACTTGGCACTGAC-ATCTTCCAGGGCCTTGACCAGACGAC 33138
Query 65930 GCTGGATGTAACCACTGTTTGCAGTTTTTACCGCGGTATCAACGAGACCTTCACGCCCGG 65989
|||| |||||||| | | || || || || || ||||||| |||||||||||| || |
Sbjct 33137 GCTGAATGTAACCGGTCTCGGCGGTCTTGACAGCAGTATCAATGAGACCTTCACGACCAG 33078
Query 65990 ACATTGCAGAAAAGAAAAACTCAGTCGGTTGTAGACCAAGCATAAACGAATTTTGAATGT 66049
||| ||| ||||| || ||| | || | |||| ||| | |||| |||| | |
Sbjct 33077 CCATGGCATGGAAGAAGAATTCACTAGGAGTCAAACCACGCAGATACGAGTTTTCGACGA 33018
Query 66050 AACCA 66054
|||||
Sbjct 33017 AACCA 33013
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303332609082974
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |