Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq54 352 7e-92 seq188 93.3 1e-13 >seq54 Length=76171 Score = 352 bits (390), Expect = 7e-92 Identities = 1006/1530 (66%), Gaps = 30/1530 (2%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| || || | ||||| | | ||| || || |||| | | || ||||||| Sbjct 17991 TTCACTCATGCATCCCCAACTCTTTTCAACGCCGGTACTCCCCAGGCGCAACTGTCTTCG 18050 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | | |||||||| || ||| |||||||||| |||||| || || | | Sbjct 18051 TGCTTCCTCGTGGATATGAAGGATGACAGCATTGAGGGTATCTATGACACTCTGAAAACT 18110 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725 || ||| | || ||||||| || || || ||||| | | || | ||| ||||||| Sbjct 18111 TGCGCTATGATCTCCAAGATGGCGGGTGGTATTGGCCTGAACG-TGCACCGCATTCGTGC 18169 Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784 || | ||||||| |||||| || |||||| || | ||||| ||||| | Sbjct 18170 CACTGGTTC-TTACATTGCCGGCACTAACGGTACCTCGAACGGTATCGTTCCTATGCTGC 18228 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGT 363844 ||||||| |||| ||||| | ||||| ||||||||||| ||||| || || | Sbjct 18229 GTGTGTTCAACAACACTGCTCGTTACGTTGACCAGGGTGGCAACAAGCGTCCTGGTGCTT 18288 Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904 ||||||| || |||||||| || || ||| |||||||||| || || ||||| || | Sbjct 18289 TTGCTATCTACCTCGAGCCGTGGCACGCGGATGTTTTTGAGTTCCTCGATCTCCGCAAGA 18348 Query 363905 A-CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGAC 363963 | ||||| ||| || ||| | ||||| |||||||| ||| || || ||| | |||| Sbjct 18349 ATCACGGCAAA-GAAGAAGTCCGTGCCCGTGATCTTTTCCTGGCTCTGTGGATCCCTGAT 18407 Query 363964 CATTTTATGAAGCGCGTGGAGGCAGGTAAGA--ATTGGTCACTCTTTTGCCCACACGAAT 364021 | ||| |||||||| || || | | | | | ||| | || | ||||| | || | Sbjct 18408 CTTTTCATGAAGCGTGTTGAA--AAGAACGCCGAGTGGACTCTTATGTGCCCCAATGAGT 18465 Query 364022 GTCCAGGTCTTTCCGA-TGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAA 364080 | || ||||| | || ||| | || || || | | || | ||||| ||||||||| Sbjct 18466 GCCCTGGTCTGGCTGACTGT-TACGGCGATGAGTTCGAGGCATTGTACGAGAAGTATGAA 18524 Query 364081 TCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGAT 364140 |||||| | ||| ||| | || || ||||| |||| ||| ||| |||| Sbjct 18525 AAGGAGGGTCGTGGTCGACTGACTCTCAAAGCCCAAAAGCTGTGGTATGCTATCCTGGAA 18584 Query 364141 TCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCC 364200 | |||| |||||| || | || | ||| ||||||| || |||||||||||| Sbjct 18585 GCTCAGACTGAGACTGGTAACCCGTTCATGCTGTACAAGGACCACTGCAACCGCAAGAGT 18644 Query 364201 AACCAGCAGCACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATA 364259 |||||| || |||| ||||| | || |||| |||||| || || |||||||||||||| Sbjct 18645 AACCAGAAGAACCTGGGTACTA-TCCGCAGCTCCAACCTGTGCACTGAGATTATTGAATA 18703 Query 364260 CACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT 364319 | ||||| || ||| ||| || || |||||||| || | || || || || ||| | Sbjct 18704 CTGTGCTCCTGATGAGGTTGCTGTCTGCAACCTTGCTTCTTTGGCCCTCCCTGCCTTTAT 18763 Query 364320 ----------AAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATG 364369 || | | |||| || ||| | || | || || ||| | || Sbjct 18764 TGACTACACCAACAACTCGTAC----GATTTCCATAAGCTGCACGAGGTCACCAAGGTTG 18819 Query 364370 CTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGC 364429 | | |||| || || | ||||| || | || || || ||||||| | Sbjct 18820 TTGTTCGCAACCTGAACCGCATCATCGATGTCAACCACTACCCTGTTACTGAAGCATATA 18879 Query 364430 GTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTA 364489 || |||||||| || || || ||| | ||||| ||||| || || |||| || Sbjct 18880 ACAGCAACATGCGTCACCGTCCCATCGGTGTCGGTGTTCAGGGTCTTGCCGACGCCTTCC 18939 Query 364490 TGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTG 364549 || || ||| | ||||| ||| |||| || || || || | | ||||| | Sbjct 18940 TGGCTCTGCGCATGCCCTTTGAGTCGGCTGAGGCCCGCCAGCTCAACACTCATATCTTCG 18999 Query 364550 AAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGT 364609 | || || || || || | || ||||| || | || | | |||| |||| Sbjct 19000 AGACCATTTACCACGCTGCTCTTGAGGCCTCGTGCGAGATTGCTCAGAAGGAGGGCAAGT 19059 Query 364610 ACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATG 364669 |||| || || ||||| || ||| | || ||||| | | |||||||| | ||||||| Sbjct 19060 ACTCGACCTACGAGGGCTCGCCTGTGTCCCAGGGCATCCTGCAGTTTGACATGTGGAATG 19119 Query 364670 TCACGCCATCTGTCCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAGCATGGT 364728 |||| || || || ||| ||||| | || | | | | | ||| |||| ||| Sbjct 19120 TCACTCCCAGTGACCTCTGGGACTGGACCTCACTGAAGGAAC-AGATCAAGCAGCACGGT 19178 Query 364729 ACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGA 364788 | |||||||| | | |||||||||||||| || |||| | ||||| || || Sbjct 19179 ATCCGCAACTCTTTACTACTTGCGCCCATGCCCACCGCCAGTACTTCCCAGATTCTGGGC 19238 Query 364789 AACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGA 364848 || ||||| |||||||| || | || ||| |||| ||||| || || | || Sbjct 19239 AATAACGAATGCTTCGAGCCCTACACCTCCAACATTTACCAGCGCCGTGTCCTAGCTGGC 19298 Query 364849 GAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGT 364908 || || | ||| || || | || | || || |||| || |||||| | Sbjct 19299 GAGTTCCAGGTCGTCAACCCCTGGCTGTTGCGTGACCTGGTTGACCTTGGCCTGTGGTCT 19358 Query 364909 GACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTT 364968 || |||||||||| ||||| |||| |||||||| | || |||||||| | || Sbjct 19359 GATTCCATGAAGAACCGCATCATTGCCGACAATGGTTCAATTCAAAACATTCCCAGCATT 19418 Query 364969 CCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATT 365028 || | || | ||| | | ||||| || |||||||| ||||| ||| || | | Sbjct 19419 CCTGCTGACATCAAGGGTCTGTACAAGACTGTATGGGAGATTTCTCAGCGTACGGTTGTC 19478 Query 365029 GATATGGCGGCCGATCGCGGTGCTTTTATC 365058 | ||||| || ||||| ||||| |||||| Sbjct 19479 CAGATGGCTGCTGATCGTGGTGCCTTTATC 19508 >seq188 Length=42393 Score = 93.3 bits (102), Expect = 1e-13 Identities = 133/185 (72%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 65871 GTTACGAATCGTTCCGTCATAATTG-CACATATTATCTTCACTTGCCTTTACAAGACAAC 65929 |||||||| |||||||| || ||| ||| | |||||| ||||| || |||| || Sbjct 33196 GTTACGAACGGTTCCGTCGTACTTGGCACTGAC-ATCTTCCAGGGCCTTGACCAGACGAC 33138 Query 65930 GCTGGATGTAACCACTGTTTGCAGTTTTTACCGCGGTATCAACGAGACCTTCACGCCCGG 65989 |||| |||||||| | | || || || || || ||||||| |||||||||||| || | Sbjct 33137 GCTGAATGTAACCGGTCTCGGCGGTCTTGACAGCAGTATCAATGAGACCTTCACGACCAG 33078 Query 65990 ACATTGCAGAAAAGAAAAACTCAGTCGGTTGTAGACCAAGCATAAACGAATTTTGAATGT 66049 ||| ||| ||||| || ||| | || | |||| ||| | |||| |||| | | Sbjct 33077 CCATGGCATGGAAGAAGAATTCACTAGGAGTCAAACCACGCAGATACGAGTTTTCGACGA 33018 Query 66050 AACCA 66054 ||||| Sbjct 33017 AACCA 33013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303332609082974