Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq54 147 2e-30
seq85 141 9e-29
seq169 125 7e-24
seq30 122 8e-23
seq59 109 5e-19
>seq54
Length=76171
Score = 147 bits (162), Expect = 2e-30
Identities = 293/434 (68%), Gaps = 0/434 (0%)
Strand=Plus/Minus
Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117
||||||||||| |||||||| || | ||||| ||| || | ||| || ||| ||||
Sbjct 19315 TTGACGACCTGGAACTCGCCAGCTAGGACACGGCGCTGGTAAATGTTGGAGGTGTAGGGC 19256
Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177
|| || | |||||||||||||| || || | || | |||||||||||| ||| |
Sbjct 19255 TCGAAGCATTCGTTATTGCCCAGAATCTGGGAAGTACTGGCGGTGGGCATGGGCGCAAGT 19196
Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237
| ||| || ||||| | ||||||| |||||| | |||||| || | ||| |||||
Sbjct 19195 AGTAAAGAGTTGCGGATACCGTGCTGCTTGATCTGTTCCTTCAGTGAGGTCCAGTCCCAG 19136
Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297
|| | | || | || | ||||||||| |||||| ||||||| | | || |
Sbjct 19135 AGGTCACTGGGAGTGACATTCCACATGTCAAACTGCAGGATGCCCTGGGACACAGGCGAG 19076
Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAGAGCG 145357
|| | ||| ||| ||||| | | || | |||||| ||||| |||||
Sbjct 19075 CCCTCGTAGGTCGAGTACTTGCCCTCCTTCTGAGCAATCTCGCACGAGGCCTCAAGAGCA 19016
Query 145358 CCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGTAC 145417
|| ||||| |||||| || || |||||||| | || ||| | ||| |
Sbjct 19015 GCGTGGTAAATGGTCTCGAAGATATGAGTGTTGAGCTGGCGGGCCTCAGCCGACTCAAAG 18956
Query 145418 GGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCCGA 145477
||||||||||| | || || ||||| || ||||| | || || |||||||| ||
Sbjct 18955 GGCATGCGCAGAGCCAGGAAGGCGTCGGCAAGACCCTGAACACCGACACCGATGGGACGG 18896
Query 145478 TGTTTCATGTTGCT 145491
|| |||||||||
Sbjct 18895 TGACGCATGTTGCT 18882
>seq85
Length=66049
Score = 141 bits (156), Expect = 9e-29
Identities = 330/491 (67%), Gaps = 9/491 (2%)
Strand=Plus/Plus
Query 46108 GACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGTATGGTGGCC 46167
|||||||| ||||||||||| | || | || || ||| ||||| | || |||
Sbjct 3014 GACTGGGCCCTGAAGTGGATCGCCGACAAGGAGTCTACCTTTGCCCAGCGTCTCGTTGCC 3073
Query 46168 TTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTTTACAT-CAA 46226
||||| ||| ||||| |||| || || || ||||||| ||||||| | | |
Sbjct 3074 TTTGCCGCTGTCGAGGGTATCTTCTTCTCGGGTGCTTTTGCCTCCATCTTCTGGCTGCGC 3133
Query 46227 AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGAGGG 46286
|| | || | ||||||| || ||||| || |||||||||||| || || || |||||
Sbjct 3134 AAGCGTGGTC-TCATGCCTGGTCTGACCTTCTCCAACGAGCTGATCTCCCGTGATGAGGG 3192
Query 46287 CCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCGCGTGCACGACAAGCTTGCGCC 46346
||| || || |||||||| || || || || | | | | || || || ||
Sbjct 3193 CCTTCACACTGACTTTGCTTGCCTGCTCT---ACTCCCACCTTAACAAC-CGCCCCAGCA 3248
Query 46347 CGACACCG--TGCTGAGCATGTTCAAGGAGGCGGTGGCCATTGAGAAGGAGTTTTTTACG 46404
| || | || || ||| ||| || || || || |||||||||||||| || ||
Sbjct 3249 AGCAACTGATTGAGGA-CATCATCACCGATGCTGTTGCTATTGAGAAGGAGTTCTTGACT 3307
Query 46405 GCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAGTCAATGTGCGACTACATCGAG 46464
| || |||||| ||||||||| ||||||||||| | ||| |||||| ||
Sbjct 3308 GAGGCCCTGCCCTGTGCCCTGCTTGGCATGAACGCCGACCTCATGAAGACCTACATTGAA 3367
Query 46465 TTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGCCGAAGCATTTTCACGCGCGCAAT 46524
||||| || ||||| || || || || | | ||| | | || ||||
Sbjct 3368 TTTGTCGCCGACCGTCTCCTGATGGCCCTCGGCAACGACAAGGTCTACAAGGCCAGCAAC 3427
Query 46525 CCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACTAATTTTTTCGAAAAGCGC 46584
|| ||||| |||||| | |||||||| || | ||||| || || || ||||| |||||
Sbjct 3428 CCCTTTGACTTTATGGAGAACATCTCGCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGT 3487
Query 46585 GTCGGCGAGTA 46595
|||| ||| ||
Sbjct 3488 GTCGCCGACTA 3498
>seq169
Length=45351
Score = 125 bits (138), Expect = 7e-24
Identities = 159/219 (73%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| |||| ||| || || | || | ||| |||||||| || |||||||| || |
Sbjct 32216 CCACCACGCAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCC 32275
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| ||||| ||||||||||| || |||| | |||||||||||||| |||
Sbjct 32276 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 32335
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| || ||||| | || | || || | ||||||||
Sbjct 32336 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAGGACTCGACC 32395
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAA 131226
|| | ||||| ||| ||||| || || || || ||||||
Sbjct 32396 TCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAAA 32434
>seq30
Length=92847
Score = 122 bits (134), Expect = 8e-23
Identities = 157/217 (72%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | ||| || || | ||| | || |||||||| ||||||||||| || |
Sbjct 12474 CCACCACGGAGACGAAGAACGAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCTGCC 12415
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||| || |||||| ||||||||||||||| | || | ||||||||||| || |||
Sbjct 12414 AGGGTACGACCGTCCTCCAGCTGCTTGCCTGCGAAAATCAGGCGCTGCTGGTCAGGGGGG 12355
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| ||||| ||||| || || ||||| | || | ||| || | ||||||||
Sbjct 12354 ATGCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATAGTGTCCGAGGACTCGACT 12295
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224
|| | ||| | ||| || ||||| || || || ||||
Sbjct 12294 TCTAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGA 12258
>seq59
Length=73848
Score = 109 bits (120), Expect = 5e-19
Identities = 138/190 (73%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104
|||| || || ||||| || || ||| || ||||| ||||||||||| || |||
Sbjct 15444 CCTTCTGGATATTGTAGTCCGCCAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCAAAGA 15503
Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164
| | ||||||||||||||||| || || || ||||| ||| || ||||| | |
Sbjct 15504 TCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 15563
Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224
| | || || | |||||| | |||| ||||| || ||||| ||||| || || ||||
Sbjct 15564 CGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTTAGGGTCTTGACGA 15623
Query 131225 AAATCTGCAT 131234
||||||||||
Sbjct 15624 AAATCTGCAT 15633
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472005383498880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |