Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq54 147 2e-30 seq85 141 9e-29 seq169 125 7e-24 seq30 122 8e-23 seq59 109 5e-19 >seq54 Length=76171 Score = 147 bits (162), Expect = 2e-30 Identities = 293/434 (68%), Gaps = 0/434 (0%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||||||||| |||||||| || | ||||| ||| || | ||| || ||| |||| Sbjct 19315 TTGACGACCTGGAACTCGCCAGCTAGGACACGGCGCTGGTAAATGTTGGAGGTGTAGGGC 19256 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || | |||||||||||||| || || | || | |||||||||||| ||| | Sbjct 19255 TCGAAGCATTCGTTATTGCCCAGAATCTGGGAAGTACTGGCGGTGGGCATGGGCGCAAGT 19196 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | ||| || ||||| | ||||||| |||||| | |||||| || | ||| ||||| Sbjct 19195 AGTAAAGAGTTGCGGATACCGTGCTGCTTGATCTGTTCCTTCAGTGAGGTCCAGTCCCAG 19136 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 || | | || | || | ||||||||| |||||| ||||||| | | || | Sbjct 19135 AGGTCACTGGGAGTGACATTCCACATGTCAAACTGCAGGATGCCCTGGGACACAGGCGAG 19076 Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAGAGCG 145357 || | ||| ||| ||||| | | || | |||||| ||||| ||||| Sbjct 19075 CCCTCGTAGGTCGAGTACTTGCCCTCCTTCTGAGCAATCTCGCACGAGGCCTCAAGAGCA 19016 Query 145358 CCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGTAC 145417 || ||||| |||||| || || |||||||| | || ||| | ||| | Sbjct 19015 GCGTGGTAAATGGTCTCGAAGATATGAGTGTTGAGCTGGCGGGCCTCAGCCGACTCAAAG 18956 Query 145418 GGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCCGA 145477 ||||||||||| | || || ||||| || ||||| | || || |||||||| || Sbjct 18955 GGCATGCGCAGAGCCAGGAAGGCGTCGGCAAGACCCTGAACACCGACACCGATGGGACGG 18896 Query 145478 TGTTTCATGTTGCT 145491 || ||||||||| Sbjct 18895 TGACGCATGTTGCT 18882 >seq85 Length=66049 Score = 141 bits (156), Expect = 9e-29 Identities = 330/491 (67%), Gaps = 9/491 (2%) Strand=Plus/Plus Query 46108 GACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGTATGGTGGCC 46167 |||||||| ||||||||||| | || | || || ||| ||||| | || ||| Sbjct 3014 GACTGGGCCCTGAAGTGGATCGCCGACAAGGAGTCTACCTTTGCCCAGCGTCTCGTTGCC 3073 Query 46168 TTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTTTACAT-CAA 46226 ||||| ||| ||||| |||| || || || ||||||| ||||||| | | | Sbjct 3074 TTTGCCGCTGTCGAGGGTATCTTCTTCTCGGGTGCTTTTGCCTCCATCTTCTGGCTGCGC 3133 Query 46227 AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGAGGG 46286 || | || | ||||||| || ||||| || |||||||||||| || || || ||||| Sbjct 3134 AAGCGTGGTC-TCATGCCTGGTCTGACCTTCTCCAACGAGCTGATCTCCCGTGATGAGGG 3192 Query 46287 CCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCGCGTGCACGACAAGCTTGCGCC 46346 ||| || || |||||||| || || || || | | | | || || || || Sbjct 3193 CCTTCACACTGACTTTGCTTGCCTGCTCT---ACTCCCACCTTAACAAC-CGCCCCAGCA 3248 Query 46347 CGACACCG--TGCTGAGCATGTTCAAGGAGGCGGTGGCCATTGAGAAGGAGTTTTTTACG 46404 | || | || || ||| ||| || || || || |||||||||||||| || || Sbjct 3249 AGCAACTGATTGAGGA-CATCATCACCGATGCTGTTGCTATTGAGAAGGAGTTCTTGACT 3307 Query 46405 GCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAGTCAATGTGCGACTACATCGAG 46464 | || |||||| ||||||||| ||||||||||| | ||| |||||| || Sbjct 3308 GAGGCCCTGCCCTGTGCCCTGCTTGGCATGAACGCCGACCTCATGAAGACCTACATTGAA 3367 Query 46465 TTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGCCGAAGCATTTTCACGCGCGCAAT 46524 ||||| || ||||| || || || || | | ||| | | || |||| Sbjct 3368 TTTGTCGCCGACCGTCTCCTGATGGCCCTCGGCAACGACAAGGTCTACAAGGCCAGCAAC 3427 Query 46525 CCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACTAATTTTTTCGAAAAGCGC 46584 || ||||| |||||| | |||||||| || | ||||| || || || ||||| ||||| Sbjct 3428 CCCTTTGACTTTATGGAGAACATCTCGCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGT 3487 Query 46585 GTCGGCGAGTA 46595 |||| ||| || Sbjct 3488 GTCGCCGACTA 3498 >seq169 Length=45351 Score = 125 bits (138), Expect = 7e-24 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || || | || | ||| |||||||| || |||||||| || | Sbjct 32216 CCACCACGCAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCC 32275 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| || |||| | |||||||||||||| ||| Sbjct 32276 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 32335 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || || | |||||||| Sbjct 32336 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAGGACTCGACC 32395 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAA 131226 || | ||||| ||| ||||| || || || || |||||| Sbjct 32396 TCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAAA 32434 >seq30 Length=92847 Score = 122 bits (134), Expect = 8e-23 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | || |||||||| ||||||||||| || | Sbjct 12474 CCACCACGGAGACGAAGAACGAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCTGCC 12415 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| ||||||||||||||| | || | ||||||||||| || ||| Sbjct 12414 AGGGTACGACCGTCCTCCAGCTGCTTGCCTGCGAAAATCAGGCGCTGCTGGTCAGGGGGG 12355 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || || ||||| | || | ||| || | |||||||| Sbjct 12354 ATGCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATAGTGTCCGAGGACTCGACT 12295 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 || | ||| | ||| || ||||| || || || |||| Sbjct 12294 TCTAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGA 12258 >seq59 Length=73848 Score = 109 bits (120), Expect = 5e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || || ||||| || || ||| || ||||| ||||||||||| || ||| Sbjct 15444 CCTTCTGGATATTGTAGTCCGCCAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCAAAGA 15503 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | ||||||||||||||||| || || || ||||| ||| || ||||| | | Sbjct 15504 TCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 15563 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || || | |||||| | |||| ||||| || ||||| ||||| || || |||| Sbjct 15564 CGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTTAGGGTCTTGACGA 15623 Query 131225 AAATCTGCAT 131234 |||||||||| Sbjct 15624 AAATCTGCAT 15633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472005383498880