Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq30 104 2e-17 seq169 84.2 2e-11 >seq30 Length=92847 Score = 104 bits (114), Expect = 2e-17 Identities = 165/236 (70%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 16703 ATTTAC---CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTG 16759 |||||| || || || || | || |||| |||||| || |||||||| || |||||| Sbjct 12711 ATTTACTGGCCACCACGAAGACGAAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTG 12652 Query 16760 TAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGG 16819 ||||| |||| ||| |||| || | || || || ||| |||| || ||||| || Sbjct 12651 TAGTCTGCCAGGGTACGACCGTCTTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGA 12592 Query 16820 TCCACAGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCG 16879 ||| || | |||||| ||||| ||| | ||| || | | | | |||||| | Sbjct 12591 TCCGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATAGTGTCCGAG 12532 Query 16880 GGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | ||| |||| ||| ||||| || || ||||| || |||||||| || ||||| Sbjct 12531 GTCTCAACCTCCAGGGTAATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 12476 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | |||||| || |||||||| || ||||||||||| |||| ||| ||||| Sbjct 12459 AGAACGAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCTGCCAGGGTACGACCGTCC 12400 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| || ||||| || |||| || ||||| ||||| || | ||| || ||||| Sbjct 12399 TCCAGCTGCTTGCCTGCGAAAATCAGGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCC 12340 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | ||| || | | | | |||||| || ||| ||| | ||||||||| Sbjct 12339 TGAATCTTGGACTTGACATTGTCAATAGTGTCCGAGGACTCGACTTCTAGGGTGATGGTC 12280 Query 16904 TTTCCGGTCAGCGTTTTGAC 16923 |||||||| || || ||||| Sbjct 12279 TTTCCGGTGAGGGTCTTGAC 12260 >seq169 Length=45351 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || ||||||||||| |||| ||| | | ||| Sbjct 32231 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCATCC 32290 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || ||||| ||| | || || ||||| |||||| || | ||||| ||||| Sbjct 32291 TCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCC 32350 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | ||| || | | | | ||||| || ||| |||| ||| ||||| Sbjct 32351 TGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTC 32410 Query 16904 TTTCCGGTCAGCGTTTTGACAAAA 16927 || || ||||| || ||||| ||| Sbjct 32411 TTACCCGTCAGGGTCTTGACGAAA 32434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405081794178430