Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq54 179 5e-40 seq85 104 3e-17 >seq54 Length=76171 Score = 179 bits (198), Expect = 5e-40 Identities = 488/740 (66%), Gaps = 18/740 (2%) Strand=Plus/Minus Query 62984 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACAC 63043 |||||| |||||||| || || || | |||| ||||| || |||| || ||| Sbjct 18511 TACAATGCCTCGAACTCATCGCCGTAACAGTCAGCCAGACCAGGGCACTCATTGGGGCAC 18452 Query 63044 ATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 63103 || | | |||||| ||| | | || || ||||| || |||||||| ||||| ||| Sbjct 18451 ATAAGAGTCCACTCGGCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCACAGA 18392 Query 63104 GCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 63163 || | || ||||| | || | ||| || || || |||||| ||||||||| Sbjct 18391 GCCAGGAAAAGATCACGGGCACGGACTTCTTCTTTGCCGTGATTCTTGCGGAGATCGAGG 18332 Query 63164 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTG 63223 ||| | | || ||| | |||||||| || | ||| || || | | | ||||| || ||| Sbjct 18331 AACTCAAAAACATCCGCGTGCCACGGCTCGAGGTAGATAGCAAAAGCACCAGGACGCTTG 18272 Query 63224 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 63283 || || ||||| || | ||| | ||| ||||| || | || | || ||| |||| ||| Sbjct 18271 TTGCCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATAGGAACGATA 18212 Query 63284 CCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAAT--ATTACTAA 63341 || || || ||||| || || || | || || ||| |||||||||| | | Sbjct 18211 CCGTTCGAGGTACCGTTAGTGCCGGCAATGTAAGAACCAGTGGCACGAATGCGGTGCACG 18152 Query 63342 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCAT 63401 || || || || || || ||||| || ||||| | ||||| ||| | || |||| Sbjct 18151 TT--CAGGCCAATACCACCCGCCATCTTGGAGATCATAGCGCAAGTTTTCAGAGTGTCAT 18094 Query 63402 AGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 63461 |||| ||||| || || |||||| |||| | | || || || ||||| ||| | Sbjct 18093 AGATACCCTCAATGCTGTCATCCTTCATATCCACGAGGAAGCACGAAGACAGTTG----C 18038 Query 63462 GACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAA 63517 | || ||| || || || || | || || || || ||||| || | || || Sbjct 18037 GCCTGGGGAGTACCGGCGTTGAAAAGAGTTGGGGATGCATGAGTGAAGAACTTGCTCGAC 17978 Query 63518 AGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGAC 63576 | || ||||| ||||| | | || | ||| || | ||||| || || || Sbjct 17977 ATGAGGTTGTAGGTCTCCAGGACACGTTCAACATCATCACCCCAG-ATTCCAACAGCAAC 17919 Query 63577 ACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGA 63636 |||||| | |||||| ||||| | || ||||||||| || | |||| | ||| || Sbjct 17918 ACGCATGATCATGTGTTGAGGACGCTCGACGATCTTGCCGTCAAGCTTCAGGAGGTATGA 17859 Query 63637 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATA 63694 || | || || |||||||| || | ||| ||||| || || ||||| | ||| Sbjct 17858 ACGCTCAAGCGTCTTGAAACCAAAGTATTGGTAGTTGAAA--TCACGATCGTACACGATA 17801 Query 63695 ACCGAGTTGAGTTTATCCTT 63714 |||||| || | ||||| Sbjct 17800 GCCGAGTCCAGCTCTTCCTT 17781 >seq85 Length=66049 Score = 104 bits (114), Expect = 3e-17 Identities = 343/530 (65%), Gaps = 9/530 (2%) Strand=Plus/Minus Query 32703 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 32762 |||||||| || || || || ||||| || |||||||| ||||| || ||||| ||| Sbjct 3171 TCGTTGGAGAAGGTCAGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCA 3112 Query 32763 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA 32822 || | || || ||||| || || || || || |||||||||| || | || || | Sbjct 3111 AAAGCACCCGAGAAGAAGATACCCTCGACAGCGGCAAAGGCAACGAGACGCTGGGCAAAG 3052 Query 32823 CCGG---CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 32879 | | |||| |||||||| | ||||| || ||||| | || || Sbjct 3051 GTAGACTCCTTGTCGGCGATCCACTTCAGGGCCCAGTCAGCCTTGCGGCGAATGCAGGGA 2992 Query 32880 ATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCA 32939 || || || || || || || || ||| | || || | || |||||| Sbjct 2991 ATAGTATCAATGGCGTTGAACAGGTAGGAACGCTGGGCGGGCTCCTTGATGTAGGTATCA 2932 Query 32940 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAG 32999 || | || || | || || ||||||||||| || || || || || || ||| Sbjct 2931 ATGAGCAGCGAGTAGGTCTCGGAGTGAATGTTTTCCATCATGATCTGGAAACCATAAAAG 2872 Query 33000 CATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACT 33059 || | ||||||| |||||| || || | | || || || | || || || || || Sbjct 2871 CAGCGGGCCTCGGGAATCTGGACCTCGGCGGAGAAACGCTCAACCAAGTTCTCGTTGACG 2812 Query 33060 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGT 33119 || |||||| ||| ||||| || |||| | || ||||| | | |||||| | Sbjct 2811 ATACCGTCAGAGGCGGCAAAGAAAGCCAGGATGTGGGAGATAAAGAACTGCTCGTCT-TT 2753 Query 33120 GTT----AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCA 33175 ||| | || ||||| || | || ||| || || | ||| | || || | ||||| Sbjct 2752 GTTCATGCGGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATCTCCTCGGCGGTCCA 2693 Query 33176 AAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATA-TTGA 33224 || || ||||| ||||| || ||||| | |||||| || || || |||| Sbjct 2692 GAAAGAAGCCTCGGCCTTCTTGTACATTTGCCAGATCTCGTGGTACTTGA 2643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633622044057200