Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq54 179 5e-40
seq85 104 3e-17
>seq54
Length=76171
Score = 179 bits (198), Expect = 5e-40
Identities = 488/740 (66%), Gaps = 18/740 (2%)
Strand=Plus/Minus
Query 62984 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACAC 63043
|||||| |||||||| || || || | |||| ||||| || |||| || |||
Sbjct 18511 TACAATGCCTCGAACTCATCGCCGTAACAGTCAGCCAGACCAGGGCACTCATTGGGGCAC 18452
Query 63044 ATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 63103
|| | | |||||| ||| | | || || ||||| || |||||||| ||||| |||
Sbjct 18451 ATAAGAGTCCACTCGGCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCACAGA 18392
Query 63104 GCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 63163
|| | || ||||| | || | ||| || || || |||||| |||||||||
Sbjct 18391 GCCAGGAAAAGATCACGGGCACGGACTTCTTCTTTGCCGTGATTCTTGCGGAGATCGAGG 18332
Query 63164 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTG 63223
||| | | || ||| | |||||||| || | ||| || || | | | ||||| || |||
Sbjct 18331 AACTCAAAAACATCCGCGTGCCACGGCTCGAGGTAGATAGCAAAAGCACCAGGACGCTTG 18272
Query 63224 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 63283
|| || ||||| || | ||| | ||| ||||| || | || | || ||| |||| |||
Sbjct 18271 TTGCCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATAGGAACGATA 18212
Query 63284 CCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAAT--ATTACTAA 63341
|| || || ||||| || || || | || || ||| |||||||||| | |
Sbjct 18211 CCGTTCGAGGTACCGTTAGTGCCGGCAATGTAAGAACCAGTGGCACGAATGCGGTGCACG 18152
Query 63342 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCAT 63401
|| || || || || || ||||| || ||||| | ||||| ||| | || ||||
Sbjct 18151 TT--CAGGCCAATACCACCCGCCATCTTGGAGATCATAGCGCAAGTTTTCAGAGTGTCAT 18094
Query 63402 AGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 63461
|||| ||||| || || |||||| |||| | | || || || ||||| ||| |
Sbjct 18093 AGATACCCTCAATGCTGTCATCCTTCATATCCACGAGGAAGCACGAAGACAGTTG----C 18038
Query 63462 GACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAA 63517
| || ||| || || || || | || || || || ||||| || | || ||
Sbjct 18037 GCCTGGGGAGTACCGGCGTTGAAAAGAGTTGGGGATGCATGAGTGAAGAACTTGCTCGAC 17978
Query 63518 AGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGAC 63576
| || ||||| ||||| | | || | ||| || | ||||| || || ||
Sbjct 17977 ATGAGGTTGTAGGTCTCCAGGACACGTTCAACATCATCACCCCAG-ATTCCAACAGCAAC 17919
Query 63577 ACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGA 63636
|||||| | |||||| ||||| | || ||||||||| || | |||| | ||| ||
Sbjct 17918 ACGCATGATCATGTGTTGAGGACGCTCGACGATCTTGCCGTCAAGCTTCAGGAGGTATGA 17859
Query 63637 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATA 63694
|| | || || |||||||| || | ||| ||||| || || ||||| | |||
Sbjct 17858 ACGCTCAAGCGTCTTGAAACCAAAGTATTGGTAGTTGAAA--TCACGATCGTACACGATA 17801
Query 63695 ACCGAGTTGAGTTTATCCTT 63714
|||||| || | |||||
Sbjct 17800 GCCGAGTCCAGCTCTTCCTT 17781
>seq85
Length=66049
Score = 104 bits (114), Expect = 3e-17
Identities = 343/530 (65%), Gaps = 9/530 (2%)
Strand=Plus/Minus
Query 32703 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 32762
|||||||| || || || || ||||| || |||||||| ||||| || ||||| |||
Sbjct 3171 TCGTTGGAGAAGGTCAGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCA 3112
Query 32763 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA 32822
|| | || || ||||| || || || || || |||||||||| || | || || |
Sbjct 3111 AAAGCACCCGAGAAGAAGATACCCTCGACAGCGGCAAAGGCAACGAGACGCTGGGCAAAG 3052
Query 32823 CCGG---CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 32879
| | |||| |||||||| | ||||| || ||||| | || ||
Sbjct 3051 GTAGACTCCTTGTCGGCGATCCACTTCAGGGCCCAGTCAGCCTTGCGGCGAATGCAGGGA 2992
Query 32880 ATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCA 32939
|| || || || || || || || ||| | || || | || ||||||
Sbjct 2991 ATAGTATCAATGGCGTTGAACAGGTAGGAACGCTGGGCGGGCTCCTTGATGTAGGTATCA 2932
Query 32940 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAG 32999
|| | || || | || || ||||||||||| || || || || || || |||
Sbjct 2931 ATGAGCAGCGAGTAGGTCTCGGAGTGAATGTTTTCCATCATGATCTGGAAACCATAAAAG 2872
Query 33000 CATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACT 33059
|| | ||||||| |||||| || || | | || || || | || || || || ||
Sbjct 2871 CAGCGGGCCTCGGGAATCTGGACCTCGGCGGAGAAACGCTCAACCAAGTTCTCGTTGACG 2812
Query 33060 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGT 33119
|| |||||| ||| ||||| || |||| | || ||||| | | |||||| |
Sbjct 2811 ATACCGTCAGAGGCGGCAAAGAAAGCCAGGATGTGGGAGATAAAGAACTGCTCGTCT-TT 2753
Query 33120 GTT----AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCA 33175
||| | || ||||| || | || ||| || || | ||| | || || | |||||
Sbjct 2752 GTTCATGCGGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATCTCCTCGGCGGTCCA 2693
Query 33176 AAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATA-TTGA 33224
|| || ||||| ||||| || ||||| | |||||| || || || ||||
Sbjct 2692 GAAAGAAGCCTCGGCCTTCTTGTACATTTGCCAGATCTCGTGGTACTTGA 2643
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633622044057200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |