Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq59 102 7e-17 seq30 93.3 4e-14 seq169 86.0 5e-12 >seq59 Length=73848 Score = 102 bits (112), Expect = 7e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || |||||||| ||||| || || || |||| ||||| ||| | || || || || || Sbjct 15639 GTCAAGATGCAGATTTTCGTCAAGACCCTAACGGGTAAGACGATTACCCTCGAGGTTGAG 15580 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 || | || ||| | ||| || |||| || || || ||||||||||| ||||| || Sbjct 15579 TCCTCGGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCG 15520 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || || || || ||||| ||||| ||| | |||||| ||| ||| | | || Sbjct 15519 GACCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGTACCCTGGCGGAC 15460 Query 22393 TACAACATTCAAAA 22406 ||||| || || || Sbjct 15459 TACAATATCCAGAA 15446 >seq30 Length=92847 Score = 93.3 bits (102), Expect = 4e-14 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| || || || ||| | | || ||| | ||| | ||||| Sbjct 11955 ACTGGCAAGACCATCACCCTCGAGGTTGAATCGTCAGACACCATCGACAACGTCAAATCC 12014 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || |||||||| ||||||||||| || || ||||| || ||||| || ||||| || || Sbjct 12015 AAGATTCAAGATAAGGAGGGTATCCCCCCGGATCAGCAGCGTCTCATTTTTGCTGGAAAG 12074 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||| | || || |||||| | | || ||||||||||| || || |||||| Sbjct 12075 CAGCTTGAAGACGGTCGCACCCTTGCGGACTACAACATTCAGAAGGAGTCCACC 12128 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || ||| | || || || || | || || || || || ||| | Sbjct 12476 ATGCAAATCTTTGTCAAGACTCTGACTGGCAAGACCATTACCCTGGAGGTTGAGACCTCG 12535 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || ||||| ||||||||||| || || || ||||| Sbjct 12536 GACACTATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCGGATCAG 12595 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| || || ||| | || || || ||| | | || |||||| Sbjct 12596 CAGCGTCTCATTTTTGCTGGAAAGCAGCTTGAAGACGGTCGTACCCTGGCAGACTACAAC 12655 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 || || || || || || | ||| | ||| Sbjct 12656 ATCCAGAAGGAGTCTACTCTGCATCTGGTT 12685 >seq169 Length=45351 Score = 86.0 bits (94), Expect = 5e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286 ||| || || || | || ||||| || | || || || || || || | || || | Sbjct 32434 TTTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCCTCGGACACGAT 32375 Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346 ||| | |||| || || || |||||||||||||| || || || || || || || Sbjct 32374 CGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGCCT 32315 Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || ||||| ||||| ||| | |||||| ||||||| | | || |||||||| || || Sbjct 32314 GATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCGGACTACAACATCCAGAA 32255 Query 22407 AGAATCCACC 22416 || |||||| Sbjct 32254 GGAGTCCACC 32245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419721569898205