Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq54 156 9e-33 seq15 95.1 2e-14 seq455 84.2 4e-11 >seq54 Length=76171 Score = 156 bits (172), Expect = 9e-33 Identities = 457/696 (66%), Gaps = 11/696 (2%) Strand=Plus/Minus Query 293116 TGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGAG 293175 |||| ||| |||| ||||||||||||||||||||| | | | || || | ||| Sbjct 19519 TGCGACTGGTCGATAAAGGCACCACGATCAGCAGCCATCTGGACAACCGTACGCTGAGAA 19460 Query 293176 ATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTGG 293235 |||||||| |||||||||| |||||| |||| | |||||| || || || Sbjct 19459 ATCTCCCATACAGTCTTGTACAGACCCTTGATGTCAGCAGGAATGCTGGGAATGTTTTGA 19400 Query 293236 ATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCAAGTCCCACGAGCA 293295 || || || || |||||| || |||||||||| | || ||||| ||| | || Sbjct 19399 ATTGAACCATTGTCGGCAATGATGCGGTTCTTCATGGAATCAGACCACAGGCCAAGGTCA 19340 Query 293296 ATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGACGG 293355 | || || || | || | | |||||| || ||||||| ||||| || || || Sbjct 19339 ACCAGGTCACGCAACAGCCAGGGGTTGACGACCTGGAACTCGCCAGCTAGGACACGGCGC 19280 Query 293356 CTGTAAATGTTCGAAGTGATGGGTTCG--GCTGCCTCAACAGACCCGCAAATCTGAGCAG 293413 ||||||||| || ||| ||| ||| || | | | || | |||||| | || Sbjct 19279 TGGTAAATGTTGGAGGTGTAGGGCTCGAAGCATTCGTTATTGCCCAG--AATCTGGGAAG 19222 Query 293414 TAGATGCGGTAGGCATAAGAGC-AGTCGTCAGAGAGTTCCTCACACC---CTTCTTGACA 293469 || ||||| ||||| | || ||| || | |||||| | | ||| || ||||| Sbjct 19221 TACTGGCGGTGGGCATGGGCGCAAGTAGT-AAAGAGTTGCGGATACCGTGCTGCTTGATC 19163 Query 293470 CGCGATTCGAGACCCGCCCAGT-CCAGAGCAGTCTGAGGTGTAACACCCCAGAGATGATA 293528 | | || | ||||| |||||| ||| || || ||| ||| | | | | Sbjct 19162 TGTTCCTTCAGTGAGGTCCAGTCCCAGAGGTCACTG-GGAGTGACATTCCACATGTCAAA 19104 Query 293529 CTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCATC 293588 ||||| ||| |||| | |||| || ||||| |||| | | ||| | || | Sbjct 19103 CTGCAGGATGCCCTGGGACACAGGCGAGCCCTCGTAGGTCGAGTACTTGCCCTCCTTCTG 19044 Query 293589 AGAGAGCTCGCAAGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGGTT 293648 || | |||||| || ||||||| |||||| ||||||| ||||||||| | | ||| Sbjct 19043 AGCAATCTCGCACGAGGCCTCAAGAGCAGCGTGGTAAATGGTCTCGAAGATATGAGTGTT 18984 Query 293649 GAGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACATCCTGCAG 293708 ||||| ||| |||| | || ||||| ||||| ||| | ||| | || || Sbjct 18983 GAGCTGGCGGGCCTCAGCCGACTCAAAGGGCATGCGCAGAGCCAGGAAGGCGTCGGCAAG 18924 Query 293709 ACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTGCCTCGGGAAC 293768 |||||| ||||| ||||| | ||| || ||||| ||||||| | | ||| || | ||| Sbjct 18923 ACCCTGAACACCGACACCGATGGGACGGTGACGCATGTTGCTGTTATATGCTTCAGTAAC 18864 Query 293769 CGCATATGCCATCACATCAATGCTCCTGTCCAGGTT 293804 | || | ||||| ||| | | || |||||| Sbjct 18863 AGGGTAGTGGTTGACATCGATGATGCGGTTCAGGTT 18828 >seq15 Length=121573 Score = 95.1 bits (104), Expect = 2e-14 Identities = 173/248 (70%), Gaps = 4/248 (2%) Strand=Plus/Plus Query 279320 CGAAGCAGAGAAGGA-GACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCG 279378 ||| || |||||||| ||| ||| || ||||| ||||| |||| |||||| || | Sbjct 90091 CGACGCTGAGAAGGACGAC-GAGGAGGGCGAGGACCTGTGCAACTGCACTTTCTCCCTGG 90149 Query 279379 CATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGGT 279438 | || |||| ||||||||||| ||| || | || | | |||||||| | || | Sbjct 90150 CCTACGGTGCTAAGATTCTGCTTAACCAGACTCATCTGCGCCTTAAGCGTGGTCAGCGCT 90209 Query 279439 ATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACG 279498 | ||||| ||||||||| || | || ||| ||||| ||||| ||||| || | Sbjct 90210 ACGGTCTTTGCGGTCCCAACGGTTCCGGAAAGTCTACTCTTATGCGTGCCATCAACAATG 90269 Query 279499 GTCAGCTGGAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCACGAC 279557 || | | ||| ||||| | ||| |||||||| | ||| || | ||| |||||||| Sbjct 90270 AGCAAGTCG-AGGGTTTCCCCAAGCAGTCTGAGGTCAAGACTGTCTTTGTTGAGCACGAT 90328 Query 279558 ATCGACTC 279565 | ||||| Sbjct 90329 CTGGACTC 90336 >seq455 Length=19464 Score = 84.2 bits (92), Expect = 4e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| | Sbjct 17937 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 17996 Query 142564 CCCACATCGGGCAGAAGTCGCCGT 142587 ||| ||| |||| || || |||| Sbjct 17997 CCCGCATTGGGCTCAATTCCCCGT 18020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027820246367137