Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq54 156 9e-33
seq15 95.1 2e-14
seq455 84.2 4e-11
>seq54
Length=76171
Score = 156 bits (172), Expect = 9e-33
Identities = 457/696 (66%), Gaps = 11/696 (2%)
Strand=Plus/Minus
Query 293116 TGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGAG 293175
|||| ||| |||| ||||||||||||||||||||| | | | || || | |||
Sbjct 19519 TGCGACTGGTCGATAAAGGCACCACGATCAGCAGCCATCTGGACAACCGTACGCTGAGAA 19460
Query 293176 ATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTGG 293235
|||||||| |||||||||| |||||| |||| | |||||| || || ||
Sbjct 19459 ATCTCCCATACAGTCTTGTACAGACCCTTGATGTCAGCAGGAATGCTGGGAATGTTTTGA 19400
Query 293236 ATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCAAGTCCCACGAGCA 293295
|| || || || |||||| || |||||||||| | || ||||| ||| | ||
Sbjct 19399 ATTGAACCATTGTCGGCAATGATGCGGTTCTTCATGGAATCAGACCACAGGCCAAGGTCA 19340
Query 293296 ATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGACGG 293355
| || || || | || | | |||||| || ||||||| ||||| || || ||
Sbjct 19339 ACCAGGTCACGCAACAGCCAGGGGTTGACGACCTGGAACTCGCCAGCTAGGACACGGCGC 19280
Query 293356 CTGTAAATGTTCGAAGTGATGGGTTCG--GCTGCCTCAACAGACCCGCAAATCTGAGCAG 293413
||||||||| || ||| ||| ||| || | | | || | |||||| | ||
Sbjct 19279 TGGTAAATGTTGGAGGTGTAGGGCTCGAAGCATTCGTTATTGCCCAG--AATCTGGGAAG 19222
Query 293414 TAGATGCGGTAGGCATAAGAGC-AGTCGTCAGAGAGTTCCTCACACC---CTTCTTGACA 293469
|| ||||| ||||| | || ||| || | |||||| | | ||| || |||||
Sbjct 19221 TACTGGCGGTGGGCATGGGCGCAAGTAGT-AAAGAGTTGCGGATACCGTGCTGCTTGATC 19163
Query 293470 CGCGATTCGAGACCCGCCCAGT-CCAGAGCAGTCTGAGGTGTAACACCCCAGAGATGATA 293528
| | || | ||||| |||||| ||| || || ||| ||| | | | |
Sbjct 19162 TGTTCCTTCAGTGAGGTCCAGTCCCAGAGGTCACTG-GGAGTGACATTCCACATGTCAAA 19104
Query 293529 CTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCATC 293588
||||| ||| |||| | |||| || ||||| |||| | | ||| | || |
Sbjct 19103 CTGCAGGATGCCCTGGGACACAGGCGAGCCCTCGTAGGTCGAGTACTTGCCCTCCTTCTG 19044
Query 293589 AGAGAGCTCGCAAGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGGTT 293648
|| | |||||| || ||||||| |||||| ||||||| ||||||||| | | |||
Sbjct 19043 AGCAATCTCGCACGAGGCCTCAAGAGCAGCGTGGTAAATGGTCTCGAAGATATGAGTGTT 18984
Query 293649 GAGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACATCCTGCAG 293708
||||| ||| |||| | || ||||| ||||| ||| | ||| | || ||
Sbjct 18983 GAGCTGGCGGGCCTCAGCCGACTCAAAGGGCATGCGCAGAGCCAGGAAGGCGTCGGCAAG 18924
Query 293709 ACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTGCCTCGGGAAC 293768
|||||| ||||| ||||| | ||| || ||||| ||||||| | | ||| || | |||
Sbjct 18923 ACCCTGAACACCGACACCGATGGGACGGTGACGCATGTTGCTGTTATATGCTTCAGTAAC 18864
Query 293769 CGCATATGCCATCACATCAATGCTCCTGTCCAGGTT 293804
| || | ||||| ||| | | || ||||||
Sbjct 18863 AGGGTAGTGGTTGACATCGATGATGCGGTTCAGGTT 18828
>seq15
Length=121573
Score = 95.1 bits (104), Expect = 2e-14
Identities = 173/248 (70%), Gaps = 4/248 (2%)
Strand=Plus/Plus
Query 279320 CGAAGCAGAGAAGGA-GACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCG 279378
||| || |||||||| ||| ||| || ||||| ||||| |||| |||||| || |
Sbjct 90091 CGACGCTGAGAAGGACGAC-GAGGAGGGCGAGGACCTGTGCAACTGCACTTTCTCCCTGG 90149
Query 279379 CATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGGT 279438
| || |||| ||||||||||| ||| || | || | | |||||||| | || |
Sbjct 90150 CCTACGGTGCTAAGATTCTGCTTAACCAGACTCATCTGCGCCTTAAGCGTGGTCAGCGCT 90209
Query 279439 ATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACG 279498
| ||||| ||||||||| || | || ||| ||||| ||||| ||||| || |
Sbjct 90210 ACGGTCTTTGCGGTCCCAACGGTTCCGGAAAGTCTACTCTTATGCGTGCCATCAACAATG 90269
Query 279499 GTCAGCTGGAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCACGAC 279557
|| | | ||| ||||| | ||| |||||||| | ||| || | ||| ||||||||
Sbjct 90270 AGCAAGTCG-AGGGTTTCCCCAAGCAGTCTGAGGTCAAGACTGTCTTTGTTGAGCACGAT 90328
Query 279558 ATCGACTC 279565
| |||||
Sbjct 90329 CTGGACTC 90336
>seq455
Length=19464
Score = 84.2 bits (92), Expect = 4e-11
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| |
Sbjct 17937 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 17996
Query 142564 CCCACATCGGGCAGAAGTCGCCGT 142587
||| ||| |||| || || ||||
Sbjct 17997 CCCGCATTGGGCTCAATTCCCCGT 18020
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027820246367137
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |