Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq85 140 6e-28
seq169 136 7e-27
seq30 136 7e-27
seq59 123 5e-23
seq15 109 1e-18
>seq85
Length=66049
Score = 140 bits (154), Expect = 6e-28
Identities = 575/895 (64%), Gaps = 29/895 (3%)
Strand=Plus/Minus
Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994
|| ||| || ||||| ||||| || | || || |||||||||||||| |||||| |
Sbjct 3517 CAGGACACCGGCCTTTTGGTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACC 3458
Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054
|| || ||| |||||| |||||||||||||| ||| | |||| || ||
Sbjct 3457 AAGCGAGATGTTCTCCATAAAGTCAAAGGGGTTGCTGGCCTTGTAGACCTTGTCGTTGCC 3398
Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114
||| || | | | ||||| || || || || ||||| |||| ||||| | |||
Sbjct 3397 GAGGGCCATCAGGAGACGGTCGGCGACAAATTCAATGTAGGTCTTCATGAGGTCGGCGTT 3338
Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174
|||||||| || | ||||| | ||| || | ||| ||||| || | || || ||
Sbjct 3337 CATGCCAAGCAGGGCACAGGGCAGGGCCTCAGTCAAGAACTCCTTCTCAATAGCAACAGC 3278
Query 10175 TTCCTCGACGATGCTCTTTACCA----CGTCAAGGGACAGCTTGTTCTCGAGCTTCGAAT 10230
|| || |||| || | || | | ||| | | ||||| || | || |
Sbjct 3277 ATCGGTGATGATGTCCTCAATCAGTTGCTTGCTGGGGCGG-TTGTTA---AGGTGGGAGT 3222
Query 10231 ACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACA 10290
| || || |||| | ||| |||||||| || ||| ||| | ||||||||| |
Sbjct 3221 AGAGCAGGCAAGCAAAGTCAGTGTGAAGGCCCTCATCACGGGAGATCAGCTCGTTGGAGA 3162
Query 10291 AACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGG-CGCAGAACGACCCG 10349
| |||||| |||||||| || || |||||||||||||| |||| ||| || ||||
Sbjct 3161 AGGTCAGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCAAAAGCACCC- 3103
Query 10350 GAGAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGG-AG----- 10403
||||| | | |||||| || | |||| ||||| |||| || |||| ||
Sbjct 3102 GAGAAGAAGATACCCTCGACAGCGGCAAAGGCAACGAGACGCTGGGCAAAGGTAGACTCC 3043
Query 10404 CGGTCGCGCGAAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGG-ATCGT 10462
|||| ||| | | ||| |||||| | ||||| | | |||||| || ||
Sbjct 3042 TTGTCG-GCG--ATCCACTTCAGGGCCCAGTCAGCCTT-GCGGCGAATGCAGGGAATAGT 2987
Query 10463 CTCGATAGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAG 10522
|| || || | ||| || | | ||||| || |||| || | ||||| |||
Sbjct 2986 ATCAATGGCGTTGAACAGGTAGGAACGCTGGGCGGGCTCCTTGATGTAGGTATCAATGAG 2927
Query 10523 CAGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACATACG 10582
||| ||||| |||| ||| | | | || | |||| || | || || ||
Sbjct 2926 CAGCGAGTAGGTCTCGGAGTGAATGTTTTCCATCATGATCTGGAAACCATAAAAGCAGCG 2867
Query 10583 TGCCGAGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCC 10642
||| ||| | ||| || ||| || | || |||||| | || || ||
Sbjct 2866 GGCCTCGGGAATCTGGACCTCGGCGGAGAAACGCTCAACCAAGTTCTCGTTGACGATACC 2807
Query 10643 ATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCA- 10701
|| | | |||||||| | |||||||| ||| ||| |||| || | |||||
Sbjct 2806 GTCAGAGGCGGCAAAGAAAGCCAGGATGTGGGAGATAAAGAACTGCTCGTCTTTGTTCAT 2747
Query 10702 ---GTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGA 10758
||| || |||||| | ||||| | || | | |||||| |||||||||
Sbjct 2746 GCGGTTGTT----CCAGTCGTGGAGATCCTTGGACAGATCAATCTCCTCGGCGGTCCAGA 2691
Query 10759 AAGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGGTACCGGATGGGGAA 10813
||| || |||||||||||||||| || | || ||| ||||| |||||||||
Sbjct 2690 AAGAAGCCTCGGCCTTCTTGTACATTTGCCAGATCTCGTGGTACTTGATGGGGAA 2636
>seq169
Length=45351
Score = 136 bits (150), Expect = 7e-27
Identities = 161/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||| ||| || |||||||| || |||||||| || || |
Sbjct 32216 CCACCACGCAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCC 32275
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || || || || || | || ||||| || ||
Sbjct 32276 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 32335
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| || ||||| | ||||||| ||||| ||||| | || || ||
Sbjct 32336 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAGGACTCGACC 32395
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452
|||| ||| ||||| || ||||| ||||||||||||||
Sbjct 32396 TCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 32433
>seq30
Length=92847
Score = 136 bits (150), Expect = 7e-27
Identities = 153/205 (75%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||||||||| | |||| ||| || |||||||| || || ||||| || || |
Sbjct 12157 CCACCGCGAAGGCGGAGGACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGCA 12098
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || ||||| | |||||| || || || ||||| | || || || || ||
Sbjct 12097 AGGGTGCGACCGTCTTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGG 12038
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||| ||||||||||| | |||||| ||||||||||||| ||||| ||
Sbjct 12037 ATACCCTCCTTATCTTGAATCTTGGATTTGACGTTGTCGATGGTGTCTGACGATTCAACC 11978
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439
|| | ||||||||| || || ||||
Sbjct 11977 TCGAGGGTGATGGTCTTGCCAGTGA 11953
Score = 132 bits (146), Expect = 9e-26
Identities = 145/193 (75%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318
|| || || ||||| || || ||||| || || | || || | || || || | ||||
Sbjct 12450 TGCAGAGTAGACTCCTTCTGAATGTTGTAGTCTGCCAGGGTACGACCGTCCTCCAGCTGC 12391
Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378
|| || ||||| || || | || ||||| || || |||||||||||||| ||||||||
Sbjct 12390 TTGCCTGCGAAAATCAGGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGAATCTTG 12331
Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438
| |||||| || || ||||| | || || ||||| | ||||||||| ||||| |||
Sbjct 12330 GACTTGACATTGTCAATAGTGTCCGAGGACTCGACTTCTAGGGTGATGGTCTTTCCGGTG 12271
Query 68439 AGGGTCTTGACGA 68451
|||||||||||||
Sbjct 12270 AGGGTCTTGACGA 12258
>seq59
Length=73848
Score = 123 bits (136), Expect = 5e-23
Identities = 140/188 (74%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
|| ||||| || || || | || || | ||||| || | |||||| || || || ||
Sbjct 15446 TTCTGGATATTGTAGTCCGCCAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCAAAGATC 15505
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
|| | || ||||| || |||||||| |||||||| || ||||| | |||||| |||
Sbjct 15506 AGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 15565
Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453
|||||||| | || || || || | ||| || || || ||||| ||||||||||||||
Sbjct 15566 ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTTAGGGTCTTGACGAAA 15625
Query 68454 ATCTGCAT 68461
||||||||
Sbjct 15626 ATCTGCAT 15633
>seq15
Length=121573
Score = 109 bits (120), Expect = 1e-18
Identities = 439/673 (65%), Gaps = 45/673 (7%)
Strand=Plus/Minus
Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040
|||||||||||||||| ||| ||| ||||||||||||| ||||||||| ||||||
Sbjct 91125 CGCCACTGGATGTACTCAGAGGGAGTCTTGTCCAGGTGGTTATCAATATGGGCGAAAGCG 91066
Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCG--AGTCG 225098
||||| | ||| || || || ||||| |||| | | | | ||| ||| |
Sbjct 91065 TGCTGCTTAATGTAGGCAATACGAATGTTCTCGTGCTG--ATAGATCTCACCGGAAGTGG 91008
Query 225099 GTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAA 225158
| ||| || ||||| || ||||| || || | ||| || ||||||||||| || |
Sbjct 91007 GGATCAGCTCACCAGTGAGAACGTTGATCAGAGTCGACTTACCGGCACCATTGGGACCGA 90948
Query 225159 TCACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGT--TGCTGAAGATCTCAGG 225216
| || |||| || || || | ||| || ||| || | |||||| ||
Sbjct 90947 TGACAGCAATACGAGAACCCAGAGAGCACTG-GA----ACGAAATGTCGGAGATCTG-GG 90894
Query 225217 GCCAGTTTGGTAAGCAAAGGCC-ACGCCACGCAGCTTCATGATGGCACG------GTCCT 225269
|| |||| | | | || || | | | | || || ||||||| | |||
Sbjct 90893 GC----TTGG-AGGTACCGGGATACTGGAAGGA-CATCTTGGTGGCACGCAGAATGGCCT 90840
Query 225270 TGGA---AGT---AATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCG 225323
||| ||| || |||||||||||| |||||||||||||| ||| | | |
Sbjct 90839 TGGCCTTAGTTTTAACACCCTCCAGGAAACCGGGCTCGGGGAAGCGGAACTCAATTTCTG 90780
Query 225324 CGTCCTTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGT 225383
| | ||| |||||||||||| ||| ||| | ||| || || | | |||||
Sbjct 90779 AGGCACCCAGCTCGTAGTAAGATCTGGCCGAGGGGCACTTCTTGACAAACTCGGCCAGGT 90720
Query 225384 TTCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACT 225442
| || ||| | | | ||||||| | || |||| || | ||| ||| | ||| ||
Sbjct 90719 TACCACGGTACCGCTTAAGCTTGAAGCGCT---CGTAGTGGATAATGTGCTG-GCAGACG 90664
Query 225443 GCGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACACGTTCGTCAG--GCCC 225499
||||||||||||||||||||| || ||||| ||||| | || | | || || |
Sbjct 90663 TTGTCAAGGAAGCCAGAGTCGTGAGAGACAATAATGGAAGTGCAGG---GGGAGTTGCAC 90607
Query 225500 TTGAGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCC 225559
|||| ||||| ||||| | || |||| ||||| || || |||||
Sbjct 90606 ---AGGTAATCCTCCAGCCACTTGACGTTCTTCACATCCAAATGGTTGGTGGGCTCGTCA 90550
Query 225560 AGAAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAG 225619
|||||||| || || | | | || || ||| || |||| ||||||||| |||||
Sbjct 90549 AGAAGCAGAATATCGGGAGCCTCGAAGACGGCACGGCACAGAGCCAGCTTCATCTTCCAA 90490
Query 225620 CCCCCGGACAGGG 225632
|| ||||| ||||
Sbjct 90489 CCACCGGAAAGGG 90477
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921607919008040
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