Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq85 140 6e-28 seq169 136 7e-27 seq30 136 7e-27 seq59 123 5e-23 seq15 109 1e-18 >seq85 Length=66049 Score = 140 bits (154), Expect = 6e-28 Identities = 575/895 (64%), Gaps = 29/895 (3%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 || ||| || ||||| ||||| || | || || |||||||||||||| |||||| | Sbjct 3517 CAGGACACCGGCCTTTTGGTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACC 3458 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 || || ||| |||||| |||||||||||||| ||| | |||| || || Sbjct 3457 AAGCGAGATGTTCTCCATAAAGTCAAAGGGGTTGCTGGCCTTGTAGACCTTGTCGTTGCC 3398 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 ||| || | | | ||||| || || || || ||||| |||| ||||| | ||| Sbjct 3397 GAGGGCCATCAGGAGACGGTCGGCGACAAATTCAATGTAGGTCTTCATGAGGTCGGCGTT 3338 Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174 |||||||| || | ||||| | ||| || | ||| ||||| || | || || || Sbjct 3337 CATGCCAAGCAGGGCACAGGGCAGGGCCTCAGTCAAGAACTCCTTCTCAATAGCAACAGC 3278 Query 10175 TTCCTCGACGATGCTCTTTACCA----CGTCAAGGGACAGCTTGTTCTCGAGCTTCGAAT 10230 || || |||| || | || | | ||| | | ||||| || | || | Sbjct 3277 ATCGGTGATGATGTCCTCAATCAGTTGCTTGCTGGGGCGG-TTGTTA---AGGTGGGAGT 3222 Query 10231 ACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACA 10290 | || || |||| | ||| |||||||| || ||| ||| | ||||||||| | Sbjct 3221 AGAGCAGGCAAGCAAAGTCAGTGTGAAGGCCCTCATCACGGGAGATCAGCTCGTTGGAGA 3162 Query 10291 AACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGG-CGCAGAACGACCCG 10349 | |||||| |||||||| || || |||||||||||||| |||| ||| || |||| Sbjct 3161 AGGTCAGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCAAAAGCACCC- 3103 Query 10350 GAGAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGG-AG----- 10403 ||||| | | |||||| || | |||| ||||| |||| || |||| || Sbjct 3102 GAGAAGAAGATACCCTCGACAGCGGCAAAGGCAACGAGACGCTGGGCAAAGGTAGACTCC 3043 Query 10404 CGGTCGCGCGAAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGG-ATCGT 10462 |||| ||| | | ||| |||||| | ||||| | | |||||| || || Sbjct 3042 TTGTCG-GCG--ATCCACTTCAGGGCCCAGTCAGCCTT-GCGGCGAATGCAGGGAATAGT 2987 Query 10463 CTCGATAGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAG 10522 || || || | ||| || | | ||||| || |||| || | ||||| ||| Sbjct 2986 ATCAATGGCGTTGAACAGGTAGGAACGCTGGGCGGGCTCCTTGATGTAGGTATCAATGAG 2927 Query 10523 CAGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACATACG 10582 ||| ||||| |||| ||| | | | || | |||| || | || || || Sbjct 2926 CAGCGAGTAGGTCTCGGAGTGAATGTTTTCCATCATGATCTGGAAACCATAAAAGCAGCG 2867 Query 10583 TGCCGAGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCC 10642 ||| ||| | ||| || ||| || | || |||||| | || || || Sbjct 2866 GGCCTCGGGAATCTGGACCTCGGCGGAGAAACGCTCAACCAAGTTCTCGTTGACGATACC 2807 Query 10643 ATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCA- 10701 || | | |||||||| | |||||||| ||| ||| |||| || | ||||| Sbjct 2806 GTCAGAGGCGGCAAAGAAAGCCAGGATGTGGGAGATAAAGAACTGCTCGTCTTTGTTCAT 2747 Query 10702 ---GTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGA 10758 ||| || |||||| | ||||| | || | | |||||| ||||||||| Sbjct 2746 GCGGTTGTT----CCAGTCGTGGAGATCCTTGGACAGATCAATCTCCTCGGCGGTCCAGA 2691 Query 10759 AAGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGGTACCGGATGGGGAA 10813 ||| || |||||||||||||||| || | || ||| ||||| ||||||||| Sbjct 2690 AAGAAGCCTCGGCCTTCTTGTACATTTGCCAGATCTCGTGGTACTTGATGGGGAA 2636 >seq169 Length=45351 Score = 136 bits (150), Expect = 7e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| ||| || |||||||| || |||||||| || || | Sbjct 32216 CCACCACGCAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCC 32275 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || || | || ||||| || || Sbjct 32276 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 32335 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||||||| ||||| ||||| | || || || Sbjct 32336 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAGGACTCGACC 32395 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||| ||| ||||| || ||||| |||||||||||||| Sbjct 32396 TCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 32433 >seq30 Length=92847 Score = 136 bits (150), Expect = 7e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||||||||| | |||| ||| || |||||||| || || ||||| || || | Sbjct 12157 CCACCGCGAAGGCGGAGGACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGCA 12098 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| || || || ||||| | || || || || || Sbjct 12097 AGGGTGCGACCGTCTTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGG 12038 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| ||||||||||| | |||||| ||||||||||||| ||||| || Sbjct 12037 ATACCCTCCTTATCTTGAATCTTGGATTTGACGTTGTCGATGGTGTCTGACGATTCAACC 11978 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439 || | ||||||||| || || |||| Sbjct 11977 TCGAGGGTGATGGTCTTGCCAGTGA 11953 Score = 132 bits (146), Expect = 9e-26 Identities = 145/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || || ||||| || || ||||| || || | || || | || || || | |||| Sbjct 12450 TGCAGAGTAGACTCCTTCTGAATGTTGTAGTCTGCCAGGGTACGACCGTCCTCCAGCTGC 12391 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || ||||| || || | || ||||| || || |||||||||||||| |||||||| Sbjct 12390 TTGCCTGCGAAAATCAGGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGAATCTTG 12331 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 | |||||| || || ||||| | || || ||||| | ||||||||| ||||| ||| Sbjct 12330 GACTTGACATTGTCAATAGTGTCCGAGGACTCGACTTCTAGGGTGATGGTCTTTCCGGTG 12271 Query 68439 AGGGTCTTGACGA 68451 ||||||||||||| Sbjct 12270 AGGGTCTTGACGA 12258 >seq59 Length=73848 Score = 123 bits (136), Expect = 5e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || ||||| || || || | || || | ||||| || | |||||| || || || || Sbjct 15446 TTCTGGATATTGTAGTCCGCCAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCAAAGATC 15505 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 || | || ||||| || |||||||| |||||||| || ||||| | |||||| ||| Sbjct 15506 AGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 15565 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453 |||||||| | || || || || | ||| || || || ||||| |||||||||||||| Sbjct 15566 ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTTAGGGTCTTGACGAAA 15625 Query 68454 ATCTGCAT 68461 |||||||| Sbjct 15626 ATCTGCAT 15633 >seq15 Length=121573 Score = 109 bits (120), Expect = 1e-18 Identities = 439/673 (65%), Gaps = 45/673 (7%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| ||| ||| ||||||||||||| ||||||||| |||||| Sbjct 91125 CGCCACTGGATGTACTCAGAGGGAGTCTTGTCCAGGTGGTTATCAATATGGGCGAAAGCG 91066 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCG--AGTCG 225098 ||||| | ||| || || || ||||| |||| | | | | ||| ||| | Sbjct 91065 TGCTGCTTAATGTAGGCAATACGAATGTTCTCGTGCTG--ATAGATCTCACCGGAAGTGG 91008 Query 225099 GTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAA 225158 | ||| || ||||| || ||||| || || | ||| || ||||||||||| || | Sbjct 91007 GGATCAGCTCACCAGTGAGAACGTTGATCAGAGTCGACTTACCGGCACCATTGGGACCGA 90948 Query 225159 TCACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGT--TGCTGAAGATCTCAGG 225216 | || |||| || || || | ||| || ||| || | |||||| || Sbjct 90947 TGACAGCAATACGAGAACCCAGAGAGCACTG-GA----ACGAAATGTCGGAGATCTG-GG 90894 Query 225217 GCCAGTTTGGTAAGCAAAGGCC-ACGCCACGCAGCTTCATGATGGCACG------GTCCT 225269 || |||| | | | || || | | | | || || ||||||| | ||| Sbjct 90893 GC----TTGG-AGGTACCGGGATACTGGAAGGA-CATCTTGGTGGCACGCAGAATGGCCT 90840 Query 225270 TGGA---AGT---AATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCG 225323 ||| ||| || |||||||||||| |||||||||||||| ||| | | | Sbjct 90839 TGGCCTTAGTTTTAACACCCTCCAGGAAACCGGGCTCGGGGAAGCGGAACTCAATTTCTG 90780 Query 225324 CGTCCTTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGT 225383 | | ||| |||||||||||| ||| ||| | ||| || || | | ||||| Sbjct 90779 AGGCACCCAGCTCGTAGTAAGATCTGGCCGAGGGGCACTTCTTGACAAACTCGGCCAGGT 90720 Query 225384 TTCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACT 225442 | || ||| | | | ||||||| | || |||| || | ||| ||| | ||| || Sbjct 90719 TACCACGGTACCGCTTAAGCTTGAAGCGCT---CGTAGTGGATAATGTGCTG-GCAGACG 90664 Query 225443 GCGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACACGTTCGTCAG--GCCC 225499 ||||||||||||||||||||| || ||||| ||||| | || | | || || | Sbjct 90663 TTGTCAAGGAAGCCAGAGTCGTGAGAGACAATAATGGAAGTGCAGG---GGGAGTTGCAC 90607 Query 225500 TTGAGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCC 225559 |||| ||||| ||||| | || |||| ||||| || || ||||| Sbjct 90606 ---AGGTAATCCTCCAGCCACTTGACGTTCTTCACATCCAAATGGTTGGTGGGCTCGTCA 90550 Query 225560 AGAAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAG 225619 |||||||| || || | | | || || ||| || |||| ||||||||| ||||| Sbjct 90549 AGAAGCAGAATATCGGGAGCCTCGAAGACGGCACGGCACAGAGCCAGCTTCATCTTCCAA 90490 Query 225620 CCCCCGGACAGGG 225632 || ||||| |||| Sbjct 90489 CCACCGGAAAGGG 90477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921607919008040