Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq30 113 4e-20 seq59 87.8 2e-12 >seq30 Length=92847 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| || | | ||| | ||| | ||||| || || || |||||||| || | Sbjct 12702 CCACCACGAAGACGAAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCC 12643 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | |||||| |||||||| || || ||||| | ||||||||||| || ||||| || Sbjct 12642 AGGGTACGACCGTCTTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGG 12583 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 ||||| || ||||| |||||| || | | |||| ||||| | || || || Sbjct 12582 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATAGTGTCCGAGGTCTCAACC 12523 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| ||| | || ||||| |||||||| || ||||| || ||||| Sbjct 12522 TCCAGGGTAATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 12476 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| | ||| | ||||| || || ||||||||||| || Sbjct 12477 ATACCACCACGGAGACGAAGAACGAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCT 12418 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| || || || || || || ||| | || || ||||| ||||| || Sbjct 12417 GCCAGGGTACGACCGTCCTCCAGCTGCTTGCCTGCGAAAATCAGGCGCTGCTGGTCAGGG 12358 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| ||||| |||||| || | | |||| ||||| | ||| ||| Sbjct 12357 GGGATGCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATAGTGTCCGAGGACTCG 12298 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 114370 || || | ||| | || || ||||| || || || || Sbjct 12297 ACTTCTAGGGTGATGGTCTTTCCGGTGAGGGTCTTGAC 12260 >seq59 Length=73848 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 114195 TTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATG 114254 || || || ||||| || || ||||| ||| || || || || ||||| |||| Sbjct 15446 TTCTGGATATTGTAGTCCGCCAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCAAAGATC 15505 Query 114255 AGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCA 114314 || ||||| ||||||||||||||||| || ||||| ||||| || | | || Sbjct 15506 AGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 15565 Query 114315 ACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 114374 | |||||| | ||| || || || | ||| | ||| || || || || || || || ||| Sbjct 15566 ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTTAGGGTCTTGACGAAA 15625 Query 114375 ATCTGCAT 114382 |||||||| Sbjct 15626 ATCTGCAT 15633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420127963672284