Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq85 379 4e-100
seq54 212 1e-49
>seq85
Length=66049
Score = 379 bits (420), Expect = 4e-100
Identities = 620/880 (70%), Gaps = 40/880 (5%)
Strand=Plus/Plus
Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344
||| || |||| || |||||| |||||||||||||| || || ||||||||||
Sbjct 2642 ATCAAGTACCACGAGATCTGGCAAATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCC 2701
Query 42345 GAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAA----CGA 42400
||||||||||| ||| ||||||| || |||| | || | ||| | |||
Sbjct 2702 GAGGAGATTGATCTGTCCAAGGATCTCCACGACTGGAACA-ACCGCATGAACAAAGACGA 2760
Query 42401 AAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGA 42460
|||| || || |||| ||||| ||||| |||||||||||||| || ||||| ||
Sbjct 2761 GCAGTTCTTTATCTCCCACATCCTGGCTTTCTTTGCCGCCTCTGACGGTATCGTCAACGA 2820
Query 42461 GAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGG 42520
|||| ||| | ||| ||||| ||| ||||| |||||||| || ||
Sbjct 2821 GAACTTGGTTGAGCGTTTCTCCGCCGAGGTCCAGATTCCCGAGGCCCGCTGCTTTTATGG 2880
Query 42521 CTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACAC 42577
|||||||| || || ||| | ||||| ||| ||| | ||||||| | ||
Sbjct 2881 TTTCCAGATCATGATGGAAAACATTCACTCCGAGACCTACTCG---CTGCTCATTGATAC 2937
Query 42578 GTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTG 42637
|||||| ||| |||| | ||||| | |||||||| ||||| || || || |||||
Sbjct 2938 CTACATCAAGGAGCCCGCCCAGCGTTCCTACCTGTTCAACGCCATTGATACTATTCCCTG 2997
Query 42638 CATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGG 42697
||| ||||| |||||||| || || ||||||| || | || || |
Sbjct 2998 CATTCGCCGCAAGGCTGACTGGGCCCTGAAGTGGATCGCCGACAAGGAGTCTACCTTTGC 3057
Query 42698 CGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTC 42757
| || | || || |||||| |||| |||||||| |||||||||||||| || || |||||
Sbjct 3058 CCAGCGTCTCGTTGCCTTTGCCGCTGTCGAGGGTATCTTCTTCTCGGGTGCTTTTGCCTC 3117
Query 42758 CATCTTCTGGCT---CAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814
|||||||||||| ||||| ||| || ||||| || || |||||||| ||||| ||
Sbjct 3118 CATCTTCTGGCTGCGCAAGCGT--GGTCTC-ATGCCTGGTCTGACCTTCTCCAACGAGCT 3174
Query 42815 CATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCT 42874
||| | | || ||||| || || | |||||||| ||||| || | ||| ||||||
Sbjct 3175 GATCTCCCGTGATGAGGGCCTTCACACTGACTTTGCTTGCCTGCTCTACTC---CCACCT 3231
Query 42875 CAGGCACAA--GCCCTCG-AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGAT 42931
| |||| |||| | ||| | | | | || ||||||||| || || || | ||
Sbjct 3232 TA---ACAACCGCCCCAGCAAGCAACTGATTGAGGACATCATCACCGATGCTGTTGCTAT 3288
Query 42932 CGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGT-CCCTGGTCGGCATGAACCACGACC 42990
|||||||||||| | || || | |||||| ||| ||||| | ||||||||| |||||
Sbjct 3289 TGAGAAGGAGTTCTTGACTGAGGCCCTGCCC-TGTGCCCTGCTTGGCATGAACGCCGACC 3347
Query 42991 TCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC- 43049
||||| | ||||| | | |||||||||| ||||||| |||| ||| ||
Sbjct 3348 TCATGAAGACCTACATTGAATTTGTCGCCGACCGTCTCCTG------ATGGCCCTCGGCA 3401
Query 43050 -CGCC----TCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGG 43104
|| | ||||||| | |||||| ||||||||||||||||||||| | | |
Sbjct 3402 ACGACAAGGTCTACAAGGCCAGCAACCCCTTTGACTTTATGGAGAACATCTCGCTTGGTG 3461
Query 43105 GCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144
||||||||||||| ||||||||||| ||||||||||||||
Sbjct 3462 GCAAGACCAACTTCTTCGAGAAGCGTGTCGCCGACTACCA 3501
>seq54
Length=76171
Score = 212 bits (234), Expect = 1e-49
Identities = 873/1368 (64%), Gaps = 39/1368 (3%)
Strand=Plus/Minus
Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149
||| || ||||| ||||| || | || || ||||||||||| | |||| | || ||
Sbjct 19316 GTTGACGACCTGGAACTCGCCAGCTAGGACACGGCGCTGGTAAATGTTGGAGGTGTAGGG 19257
Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209
||||| || || | |||||||| ||||| | || || || || |||||||||| |
Sbjct 19256 CTCGAAGCATTCGTTATTGCCCAGAATCTGGGAAGTACTGGCGGTGGGCATGGGCGCAAG 19197
Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCA 244269
|| | | ||| | | |||||| || ||| | | || | ||||||||||
Sbjct 19196 TAGTAAAGAGTTGCGGATACCGTGCTGCTTGATCTGTTCCTTCAGTGAGGTCCAGTCCCA 19137
Query 244270 CATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329
|||||| | | ||| |||||||||||||||||| | |||| |
Sbjct 19136 ---------GAGGTCACTGGGAGTGACATTCCACATGTCAAACTGCAGGATGCCCTGGGA 19086
Query 244330 GACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTC 244389
|| || |||||||||||||| ||| || || ||| || | || || |
Sbjct 19085 CACAGGCGAGCCCTCGTAGGTCGAGTACTTGCCCTCCTTCTGAGCAATCTCGCACGAGGC 19026
Query 244390 GTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTT-GC 244448
|| || || |||| ||| |||||||||||||| |||| | | |||||||| ||
Sbjct 19025 CTCAAGAGCAGCGTGGTAAATGGTCTCGAAGATATGAGTGTTGAGCTGGCGGGCCTCAGC 18966
Query 244449 CGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGC 244508
|| | ||||| |||| || || |||| ||||||| || ||||| || |||| |
Sbjct 18965 CG-ACTCAAAGGGCATGCGCAGAGCCAGGAAGGCGTCGGCAAGACCCTGAACACCGACAC 18907
Query 244509 CGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGT 244568
||||||| | ||| ||| ||||| | ||||| | || ||||| |||| | |
Sbjct 18906 CGATGGGACGGTGACGCATGTTGCTGTTATATGCTTCAGTAACAGGGTAGTGGTTGACAT 18847
Query 244569 CGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGT 244628
|||| | ||| |||||||| | | | ||| ||| |||| || || |
Sbjct 18846 CGATGATGCGGTTCAGGTTGCGAACAACAACCTTGGTGACCTCGTGCAGCTTATGGAAAT 18787
Query 244629 CGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGG 244688
||||| || | | || | | || | | ||| | |||||| | |
Sbjct 18786 CGTACGAGTTG------TTGGTG-TAGTCA-----ATAAAGGCAGGGAGGGCCAAAGAAG 18739
Query 244689 CCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGT 244748
| ||||||||||| || ||||| || | ||| | | |||||| ||||| ||||
Sbjct 18738 CAAGGTTGCAGACAGCAACCTCATCAGGAGCACAGTATTCAATAATCTCAGTGCACAGGT 18679
Query 244749 TACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGT 244808
| || ||| || ||||||| || || || |||| ||||||| ||||||||
Sbjct 18678 TGGAGCTGCGGATAGTACCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAGTGGTCCTTGT 18619
Query 244809 AGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCC 244868
| |||||||| || || ||||| ||| || | |||| | ||| || |
Sbjct 18618 ACAGCATGAACGGGTTACCAGTCTCAGTCTGAGCTTCCAGGATAGCATACCACAGCTTTT 18559
Query 244869 TAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGA 244928
|| |||| ||| ||| | ||||| || || ||||| |||||||
Sbjct 18558 GGGCTTTGAGAGTCAGTCGACCACGACCCTCCTTTTCATACTTCTCGTACAATGCCTCGA 18499
Query 244929 ACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACT 244988
|||| ||| | || | || || |||||| |||||||| ||| ||||||
Sbjct 18498 ACTCATCGCCGTAACAGTCAGCCAGACCAGGGCACTCATTGGGGCACATAAGAGTCCACT 18439
Query 244989 CGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGT 245048
|| || | | || | || |||||| || || |||||||| || ||| |||| || |
Sbjct 18438 CGGCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCACAGAGCCAGGAAAAGAT 18379
Query 245049 CCCTGGTCCTCTGCTCGTCCGAGCCAGTG-TTCTTCCTCAGCTCCAAAAAGTCAAAGACG 245107
| | || | || || ||| ||| ||||| | || || | || ||||| ||
Sbjct 18378 CACGGGCACGGACTTCTTCTTTGCC-GTGATTCTTGCGGAGATCGAGGAACTCAAAAACA 18320
Query 245108 TCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGG 245167
|| ||||||| ||||| | ||||| ||| | || || || ||||||||||| ||||||
Sbjct 18319 TCCGCGTGCCACGGCTCGAGGTAGATAGCAAAAGCACCAGGACGCTTGTTGCCACCCTGG 18260
Query 245168 TCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGA 245223
| || | | ||||| |||||| | ||||| |||| || || ||||| ||
Sbjct 18259 T----CAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATAGGAACGATACCGTTCGA 18204
Query 245224 GTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCC---TGAGGTTGCTGATGGACAT 245280
| ||||| ||||| ||||| | || || | | || || ||| | | ||
Sbjct 18203 GGTACCGTTAGTGCCGGCAATGTAAGAACCAGTGGCACGAATGCGG-TGC--ACGTTCAG 18147
Query 245281 GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCC 245340
||| | || || || ||||||||| | ||||| | || | ||||| || ||
Sbjct 18146 GCCAATACCACCCGCCATCTTGGAGATCATAGCGCAAGTTTTCAGAGTGTCATAGATACC 18087
Query 245341 CTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCT 245400
||| |||||||| |||||| | | || ||||| || ||||| || | || ||| |
Sbjct 18086 CTCAATGCTGTCATCCTTCATATCCACGAGGAAGCACGAAGACAGTTGCGCCTGGGGAGT 18027
Query 245401 GCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGA 245448
| | |||||| ||||| ||| || || || ||| | ||||||
Sbjct 18026 ACCGGCGTTGAAAAGAGTTGGGGATGCATGAGTGAAGAACTTGCTCGA 17979
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944324362070320
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