Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq85 379 4e-100 seq54 212 1e-49 >seq85 Length=66049 Score = 379 bits (420), Expect = 4e-100 Identities = 620/880 (70%), Gaps = 40/880 (5%) Strand=Plus/Plus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||| || |||| || |||||| |||||||||||||| || || |||||||||| Sbjct 2642 ATCAAGTACCACGAGATCTGGCAAATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCC 2701 Query 42345 GAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAA----CGA 42400 ||||||||||| ||| ||||||| || |||| | || | ||| | ||| Sbjct 2702 GAGGAGATTGATCTGTCCAAGGATCTCCACGACTGGAACA-ACCGCATGAACAAAGACGA 2760 Query 42401 AAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGA 42460 |||| || || |||| ||||| ||||| |||||||||||||| || ||||| || Sbjct 2761 GCAGTTCTTTATCTCCCACATCCTGGCTTTCTTTGCCGCCTCTGACGGTATCGTCAACGA 2820 Query 42461 GAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGG 42520 |||| ||| | ||| ||||| ||| ||||| |||||||| || || Sbjct 2821 GAACTTGGTTGAGCGTTTCTCCGCCGAGGTCCAGATTCCCGAGGCCCGCTGCTTTTATGG 2880 Query 42521 CTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACAC 42577 |||||||| || || ||| | ||||| ||| ||| | ||||||| | || Sbjct 2881 TTTCCAGATCATGATGGAAAACATTCACTCCGAGACCTACTCG---CTGCTCATTGATAC 2937 Query 42578 GTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTG 42637 |||||| ||| |||| | ||||| | |||||||| ||||| || || || ||||| Sbjct 2938 CTACATCAAGGAGCCCGCCCAGCGTTCCTACCTGTTCAACGCCATTGATACTATTCCCTG 2997 Query 42638 CATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGG 42697 ||| ||||| |||||||| || || ||||||| || | || || | Sbjct 2998 CATTCGCCGCAAGGCTGACTGGGCCCTGAAGTGGATCGCCGACAAGGAGTCTACCTTTGC 3057 Query 42698 CGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTC 42757 | || | || || |||||| |||| |||||||| |||||||||||||| || || ||||| Sbjct 3058 CCAGCGTCTCGTTGCCTTTGCCGCTGTCGAGGGTATCTTCTTCTCGGGTGCTTTTGCCTC 3117 Query 42758 CATCTTCTGGCT---CAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 |||||||||||| ||||| ||| || ||||| || || |||||||| ||||| || Sbjct 3118 CATCTTCTGGCTGCGCAAGCGT--GGTCTC-ATGCCTGGTCTGACCTTCTCCAACGAGCT 3174 Query 42815 CATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCT 42874 ||| | | || ||||| || || | |||||||| ||||| || | ||| |||||| Sbjct 3175 GATCTCCCGTGATGAGGGCCTTCACACTGACTTTGCTTGCCTGCTCTACTC---CCACCT 3231 Query 42875 CAGGCACAA--GCCCTCG-AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGAT 42931 | |||| |||| | ||| | | | | || ||||||||| || || || | || Sbjct 3232 TA---ACAACCGCCCCAGCAAGCAACTGATTGAGGACATCATCACCGATGCTGTTGCTAT 3288 Query 42932 CGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGT-CCCTGGTCGGCATGAACCACGACC 42990 |||||||||||| | || || | |||||| ||| ||||| | ||||||||| ||||| Sbjct 3289 TGAGAAGGAGTTCTTGACTGAGGCCCTGCCC-TGTGCCCTGCTTGGCATGAACGCCGACC 3347 Query 42991 TCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC- 43049 ||||| | ||||| | | |||||||||| ||||||| |||| ||| || Sbjct 3348 TCATGAAGACCTACATTGAATTTGTCGCCGACCGTCTCCTG------ATGGCCCTCGGCA 3401 Query 43050 -CGCC----TCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGG 43104 || | ||||||| | |||||| ||||||||||||||||||||| | | | Sbjct 3402 ACGACAAGGTCTACAAGGCCAGCAACCCCTTTGACTTTATGGAGAACATCTCGCTTGGTG 3461 Query 43105 GCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144 ||||||||||||| ||||||||||| |||||||||||||| Sbjct 3462 GCAAGACCAACTTCTTCGAGAAGCGTGTCGCCGACTACCA 3501 >seq54 Length=76171 Score = 212 bits (234), Expect = 1e-49 Identities = 873/1368 (64%), Gaps = 39/1368 (3%) Strand=Plus/Minus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| ||||| || | || || ||||||||||| | |||| | || || Sbjct 19316 GTTGACGACCTGGAACTCGCCAGCTAGGACACGGCGCTGGTAAATGTTGGAGGTGTAGGG 19257 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||| || || | |||||||| ||||| | || || || || |||||||||| | Sbjct 19256 CTCGAAGCATTCGTTATTGCCCAGAATCTGGGAAGTACTGGCGGTGGGCATGGGCGCAAG 19197 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCA 244269 || | | ||| | | |||||| || ||| | | || | |||||||||| Sbjct 19196 TAGTAAAGAGTTGCGGATACCGTGCTGCTTGATCTGTTCCTTCAGTGAGGTCCAGTCCCA 19137 Query 244270 CATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329 |||||| | | ||| |||||||||||||||||| | |||| | Sbjct 19136 ---------GAGGTCACTGGGAGTGACATTCCACATGTCAAACTGCAGGATGCCCTGGGA 19086 Query 244330 GACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTC 244389 || || |||||||||||||| ||| || || ||| || | || || | Sbjct 19085 CACAGGCGAGCCCTCGTAGGTCGAGTACTTGCCCTCCTTCTGAGCAATCTCGCACGAGGC 19026 Query 244390 GTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTT-GC 244448 || || || |||| ||| |||||||||||||| |||| | | |||||||| || Sbjct 19025 CTCAAGAGCAGCGTGGTAAATGGTCTCGAAGATATGAGTGTTGAGCTGGCGGGCCTCAGC 18966 Query 244449 CGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGC 244508 || | ||||| |||| || || |||| ||||||| || ||||| || |||| | Sbjct 18965 CG-ACTCAAAGGGCATGCGCAGAGCCAGGAAGGCGTCGGCAAGACCCTGAACACCGACAC 18907 Query 244509 CGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGT 244568 ||||||| | ||| ||| ||||| | ||||| | || ||||| |||| | | Sbjct 18906 CGATGGGACGGTGACGCATGTTGCTGTTATATGCTTCAGTAACAGGGTAGTGGTTGACAT 18847 Query 244569 CGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGT 244628 |||| | ||| |||||||| | | | ||| ||| |||| || || | Sbjct 18846 CGATGATGCGGTTCAGGTTGCGAACAACAACCTTGGTGACCTCGTGCAGCTTATGGAAAT 18787 Query 244629 CGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGG 244688 ||||| || | | || | | || | | ||| | |||||| | | Sbjct 18786 CGTACGAGTTG------TTGGTG-TAGTCA-----ATAAAGGCAGGGAGGGCCAAAGAAG 18739 Query 244689 CCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGT 244748 | ||||||||||| || ||||| || | ||| | | |||||| ||||| |||| Sbjct 18738 CAAGGTTGCAGACAGCAACCTCATCAGGAGCACAGTATTCAATAATCTCAGTGCACAGGT 18679 Query 244749 TACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGT 244808 | || ||| || ||||||| || || || |||| ||||||| |||||||| Sbjct 18678 TGGAGCTGCGGATAGTACCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAGTGGTCCTTGT 18619 Query 244809 AGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCC 244868 | |||||||| || || ||||| ||| || | |||| | ||| || | Sbjct 18618 ACAGCATGAACGGGTTACCAGTCTCAGTCTGAGCTTCCAGGATAGCATACCACAGCTTTT 18559 Query 244869 TAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGA 244928 || |||| ||| ||| | ||||| || || ||||| ||||||| Sbjct 18558 GGGCTTTGAGAGTCAGTCGACCACGACCCTCCTTTTCATACTTCTCGTACAATGCCTCGA 18499 Query 244929 ACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACT 244988 |||| ||| | || | || || |||||| |||||||| ||| |||||| Sbjct 18498 ACTCATCGCCGTAACAGTCAGCCAGACCAGGGCACTCATTGGGGCACATAAGAGTCCACT 18439 Query 244989 CGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGT 245048 || || | | || | || |||||| || || |||||||| || ||| |||| || | Sbjct 18438 CGGCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCACAGAGCCAGGAAAAGAT 18379 Query 245049 CCCTGGTCCTCTGCTCGTCCGAGCCAGTG-TTCTTCCTCAGCTCCAAAAAGTCAAAGACG 245107 | | || | || || ||| ||| ||||| | || || | || ||||| || Sbjct 18378 CACGGGCACGGACTTCTTCTTTGCC-GTGATTCTTGCGGAGATCGAGGAACTCAAAAACA 18320 Query 245108 TCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGG 245167 || ||||||| ||||| | ||||| ||| | || || || ||||||||||| |||||| Sbjct 18319 TCCGCGTGCCACGGCTCGAGGTAGATAGCAAAAGCACCAGGACGCTTGTTGCCACCCTGG 18260 Query 245168 TCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGA 245223 | || | | ||||| |||||| | ||||| |||| || || ||||| || Sbjct 18259 T----CAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATAGGAACGATACCGTTCGA 18204 Query 245224 GTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCC---TGAGGTTGCTGATGGACAT 245280 | ||||| ||||| ||||| | || || | | || || ||| | | || Sbjct 18203 GGTACCGTTAGTGCCGGCAATGTAAGAACCAGTGGCACGAATGCGG-TGC--ACGTTCAG 18147 Query 245281 GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCC 245340 ||| | || || || ||||||||| | ||||| | || | ||||| || || Sbjct 18146 GCCAATACCACCCGCCATCTTGGAGATCATAGCGCAAGTTTTCAGAGTGTCATAGATACC 18087 Query 245341 CTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCT 245400 ||| |||||||| |||||| | | || ||||| || ||||| || | || ||| | Sbjct 18086 CTCAATGCTGTCATCCTTCATATCCACGAGGAAGCACGAAGACAGTTGCGCCTGGGGAGT 18027 Query 245401 GCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGA 245448 | | |||||| ||||| ||| || || || ||| | |||||| Sbjct 18026 ACCGGCGTTGAAAAGAGTTGGGGATGCATGAGTGAAGAACTTGCTCGA 17979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944324362070320