Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq85 118 2e-21
seq15 86.0 1e-11
>seq85
Length=66049
Score = 118 bits (130), Expect = 2e-21
Identities = 297/443 (67%), Gaps = 10/443 (2%)
Strand=Plus/Plus
Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348
||||| |||||||||| |||| | || || ||||| | || || ||| | ||
Sbjct 3053 TTTGCCCAGCGTCTCGTTGCCTTTGCCGCTGTCGAGGGTATCTTCTTCTC-GGGTGCTTT 3111
Query 243349 TGCG-CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGA 243407
||| ||||||| |||||||| || ||| | |||||||| || | || |||||
Sbjct 3112 TGCCTCCATCTTCTGGCTGCGCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGA 3171
Query 243408 GTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCT 243467
| | ||| || || |||||||||||| | || | | || | || || | ||
Sbjct 3172 GCTGATCTCCCGTGATGAGGGCCTTCACACTGACTTTGCTTGCCTGCTCTACTCCCACCT 3231
Query 243468 CCAGAACAAGCTACCATTCGA--AACGG-TCAAACAAATCATCACAGAAGCAGTTGAAAA 243524
||||| | || | | ||| | | | | |||||||| || || |||| |
Sbjct 3232 T---AACAACCGCCCCAGCAAGCAACTGATTGAGGACATCATCACCGATGCTGTTGCTAT 3288
Query 243525 CGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACT 243584
|| ||||| ||| | || || | || || || ||||||||||| | || ||
Sbjct 3289 TGAGAAGGAGTTCTTGACTGAGGCCCTGCCCTGTGCCCTGCTTGGCATGAACGCCGACCT 3348
Query 243585 CATG-GGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGA 243643
|||| ||| ||||| ||||| || |||||||| | | || || || || | || |
Sbjct 3349 CATGAAGAC-CTACATTGAATTTGTCGCCGACCGTCTCCTGATGGCCCTCGGCAACGACA 3407
Query 243644 AAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAA 243703
| || ||||| ||| |||||||||| |||||||||| ||| |||||| || || |
Sbjct 3408 AGGTCTACAAGGCCAGCAACCCCTTTGACTTTATGGAGAACATCTCGCTTGGTGGCAAGA 3467
Query 243704 CTAACTTCTTCGAAAAGCGTGTC 243726
| ||||||||||| |||||||||
Sbjct 3468 CCAACTTCTTCGAGAAGCGTGTC 3490
>seq15
Length=121573
Score = 86.0 bits (94), Expect = 1e-11
Identities = 192/280 (69%), Gaps = 14/280 (5%)
Strand=Plus/Minus
Query 333716 GGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGG 333775
||| | |||||| || ||||||| ||| || || |||| ||| ||||| | | |
Sbjct 90748 GGGGCACTTCTTGACAAACTCGGCCAGGTTACCACGGTACCGCTTAAGCTTGAAGC---G 90692
Query 333776 TTCGTAATGGATAATAGAGGTG-CAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAA 333834
||||| |||||||| | | || || || ||| ||||| || |||||||| || ||||
Sbjct 90691 CTCGTAGTGGATAAT-GTGCTGGCAGACGTTGTCAAGGAAGCCAGAGTCGTGAGAGACAA 90633
Query 333835 TCACGCACGAAACGTCCTTAAGG--TTGATCAGGTATTCAATCAGCCACCTCACGTTAGA 333892
| | | ||| || | || ||| |||||| || ||||||| | |||||
Sbjct 90632 TAATG---GAA--GTGCAGGGGGAGTTGCACAGGTAATCCTCCAGCCACTTGACGTTCTT 90578
Query 333893 CACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGC 333952
|||| | ||||||||| |||||||||||||| || | | | | || | ||
Sbjct 90577 CACATCCAAATGGTTGGTGGGCTCGTCAAGAAGCAGAATATCGGGAGCCTCGAAGACGGC 90518
Query 333953 ACGTGCA-AGAGCGAGTTTCATTTTCCACCCTCCTGAAAG 333991
||| ||| ||||| || ||||| ||||| || || |||||
Sbjct 90517 ACG-GCACAGAGCCAGCTTCATCTTCCAACCACCGGAAAG 90479
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102862237772950
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |