Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq85 118 2e-21 seq15 86.0 1e-11 >seq85 Length=66049 Score = 118 bits (130), Expect = 2e-21 Identities = 297/443 (67%), Gaps = 10/443 (2%) Strand=Plus/Plus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 ||||| |||||||||| |||| | || || ||||| | || || ||| | || Sbjct 3053 TTTGCCCAGCGTCTCGTTGCCTTTGCCGCTGTCGAGGGTATCTTCTTCTC-GGGTGCTTT 3111 Query 243349 TGCG-CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGA 243407 ||| ||||||| |||||||| || ||| | |||||||| || | || ||||| Sbjct 3112 TGCCTCCATCTTCTGGCTGCGCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGA 3171 Query 243408 GTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCT 243467 | | ||| || || |||||||||||| | || | | || | || || | || Sbjct 3172 GCTGATCTCCCGTGATGAGGGCCTTCACACTGACTTTGCTTGCCTGCTCTACTCCCACCT 3231 Query 243468 CCAGAACAAGCTACCATTCGA--AACGG-TCAAACAAATCATCACAGAAGCAGTTGAAAA 243524 ||||| | || | | ||| | | | | |||||||| || || |||| | Sbjct 3232 T---AACAACCGCCCCAGCAAGCAACTGATTGAGGACATCATCACCGATGCTGTTGCTAT 3288 Query 243525 CGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACT 243584 || ||||| ||| | || || | || || || ||||||||||| | || || Sbjct 3289 TGAGAAGGAGTTCTTGACTGAGGCCCTGCCCTGTGCCCTGCTTGGCATGAACGCCGACCT 3348 Query 243585 CATG-GGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGA 243643 |||| ||| ||||| ||||| || |||||||| | | || || || || | || | Sbjct 3349 CATGAAGAC-CTACATTGAATTTGTCGCCGACCGTCTCCTGATGGCCCTCGGCAACGACA 3407 Query 243644 AAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAA 243703 | || ||||| ||| |||||||||| |||||||||| ||| |||||| || || | Sbjct 3408 AGGTCTACAAGGCCAGCAACCCCTTTGACTTTATGGAGAACATCTCGCTTGGTGGCAAGA 3467 Query 243704 CTAACTTCTTCGAAAAGCGTGTC 243726 | ||||||||||| ||||||||| Sbjct 3468 CCAACTTCTTCGAGAAGCGTGTC 3490 >seq15 Length=121573 Score = 86.0 bits (94), Expect = 1e-11 Identities = 192/280 (69%), Gaps = 14/280 (5%) Strand=Plus/Minus Query 333716 GGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGG 333775 ||| | |||||| || ||||||| ||| || || |||| ||| ||||| | | | Sbjct 90748 GGGGCACTTCTTGACAAACTCGGCCAGGTTACCACGGTACCGCTTAAGCTTGAAGC---G 90692 Query 333776 TTCGTAATGGATAATAGAGGTG-CAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAA 333834 ||||| |||||||| | | || || || ||| ||||| || |||||||| || |||| Sbjct 90691 CTCGTAGTGGATAAT-GTGCTGGCAGACGTTGTCAAGGAAGCCAGAGTCGTGAGAGACAA 90633 Query 333835 TCACGCACGAAACGTCCTTAAGG--TTGATCAGGTATTCAATCAGCCACCTCACGTTAGA 333892 | | | ||| || | || ||| |||||| || ||||||| | ||||| Sbjct 90632 TAATG---GAA--GTGCAGGGGGAGTTGCACAGGTAATCCTCCAGCCACTTGACGTTCTT 90578 Query 333893 CACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGC 333952 |||| | ||||||||| |||||||||||||| || | | | | || | || Sbjct 90577 CACATCCAAATGGTTGGTGGGCTCGTCAAGAAGCAGAATATCGGGAGCCTCGAAGACGGC 90518 Query 333953 ACGTGCA-AGAGCGAGTTTCATTTTCCACCCTCCTGAAAG 333991 ||| ||| ||||| || ||||| ||||| || || ||||| Sbjct 90517 ACG-GCACAGAGCCAGCTTCATCTTCCAACCACCGGAAAG 90479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102862237772950