Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq85 123 3e-23 >seq85 Length=66049 Score = 123 bits (136), Expect = 3e-23 Identities = 529/822 (64%), Gaps = 33/822 (4%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCT-GATATTCTCCA 125816 |||||| | || ||||||||||||||||| ||||| || |||||| ||| ||||||| Sbjct 3499 GTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCA-CCAAGCGAGATGTTCTCCA 3441 Query 125817 TAAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGC-ACCCCAATCTGTTTGA 125870 |||| ||||| ||||| | | || | | | |||| | | | ||| | Sbjct 3440 TAAAGTCAAAGGGGTTGCTGGCCTTGTAGACCTTGTCGTTGCCGAGGGCCATC------A 3387 Query 125871 GGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGA 125930 ||||||| || | ||| | |||||||| ||| || | |||||| || | | Sbjct 3386 GGAGACGGTCGGCGACAAATTCAATGTAGGTCTTCATGAGGTCGGCGTTCATGCCAAGCA 3327 Query 125931 GGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGA 125990 || ||| || || || || | |||| |||||||||| | || || || | || Sbjct 3326 GGGCACAGGGCAGGGCCTCAGTCAAGAACTCCTTCTCAATAGCAACAGCATCGGTGATGA 3267 Query 125991 TGGCGTGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTT-GAAGAGTTCCACG--- 126046 || | | ||| | | | || | ||| || || | |||| || | Sbjct 3266 TGTCCTCAATCAGTTGCTTGCTGGGGCGGTTGTT-AAGGTGGGAGTAGAG---CAGGCAA 3211 Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| || ||||| ||||||||||| || || || |||||| ||| || Sbjct 3210 GCAAAGTCAGTGTGAAGGCCCTCATCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCA 3151 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||||||||| ||||| || |||||| || | ||| | ||||||||||||||| Sbjct 3150 GGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCAAAAGCACCCGAGAAGAAGATA 3091 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACT--TTGT-GTCA 126223 ||||| ||| || || |||| |||||||| ||||||| |||| |||| | | Sbjct 3090 CCCTCGACAGCGGCAAAGGCAACGAGACGCTGGGCAAAGG---TAGACTCCTTGTCGGCG 3034 Query 126224 AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCA 126283 | |||||||| ||||| | ||||| || || || | || | || || | Sbjct 3033 ATCCACTTCAGGGCCCAGTCAGCCTTGCGGCGAATGCAGGGAATAGTATCAATGGCGTTG 2974 Query 126284 AAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTT 126343 || || | | | || || |||||||| |||| ||||| || || || Sbjct 2973 AACAGGTAGGAACGCTGGGCGGGCTCCTTGATGTAGGTATCAATGAGCAGCGAGTAGGTC 2914 Query 126344 TCGCCGTGGACCATTT-CATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTAT 126402 ||| ||| | ||| ||| || | ||| | | || || |||| || ||| || Sbjct 2913 TCGGAGTGAATGTTTTCCATCAT-GATCTGGAAACCATAAAAGCAGCGGGCCTCGGGAAT 2855 Query 126403 CTGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGC 126462 ||| ||||| ||| ||| | | | ||||| || || || || || | || Sbjct 2854 CTGGACCTCGGCGGAGAAACGCTCAACCAAGTTCTCGTTGACGATACCGTCAGAGGCGGC 2795 Query 126463 AAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCA 126519 ||| || |||||||| | || || ||| || | | ||||| || | ||||| Sbjct 2794 AAAGAAAGCCAGGATGTGGGAGATAAAGAACTGCTCGTCTTTGTTCATGCGGTTGTTCCA 2735 Query 126520 GTCGTCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 126561 ||||| |||||||| || ||||| | |||||| || ||||| Sbjct 2734 GTCGTGGAGATCCTTGGACAGATCAATCTCCTCGGCGGTCCA 2693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597344214081560