Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq30 105 7e-18
seq59 96.9 4e-15
seq169 86.0 7e-12
>seq30
Length=92847
Score = 105 bits (116), Expect = 7e-18
Identities = 151/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059
|||| ||||| || |||||| || || ||||| || ||||| || || |||| ||
Sbjct 12684 ACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTACGACCGTCTTCA 12625
Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119
|||||||| ||||| || ||||| |||||||| || | || | || |||||||||| ||
Sbjct 12624 AGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCC-TG 12566
Query 42120 ATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178
| | || | |||| | | | ||||| | || || || | || ||||| ||
Sbjct 12565 AATCTTGGACTTGACATTGTCAATAGTGTCCGAGGTCTCAACCTCCAGGGTAATGGTCTT 12506
Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||| || || ||||| ||||||||||||||
Sbjct 12505 GCCAGTCAGAGTCTTGACAAAGATTTGCAT 12476
Score = 86.0 bits (94), Expect = 7e-12
Identities = 129/181 (71%), Gaps = 2/181 (1%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| ||||| ||||| || ||||| || || |||| || |||||||| || |||||
Sbjct 12439 CTCCTTCTGAATGTTGTAGTCTGCCAGGGTACGACCGTCCTCCAGCTGCTTGCCTGCGAA 12380
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135
|| || ||||||||||| | || | || ||||||||| ||| | || | ||||
Sbjct 12379 AATCAGGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCC-TGAATCTTGGACTTGACAT 12321
Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195
| | | ||||| || || || || | |||||||| || || || || ||||| |
Sbjct 12320 TGTCAATAGTGTCCGAGGACTCGACTTCTAGGGTGATGGTCTTTCCGGTGAGGGTCTTGA 12261
Query 42196 C 42196
|
Sbjct 12260 C 12260
>seq59
Length=73848
Score = 96.9 bits (106), Expect = 4e-15
Identities = 139/196 (71%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078
|||| || |||||||| || ||||| || || | || || |||||||| ||||| || |
Sbjct 15444 CCTTCTGGATATTGTAGTCCGCCAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCAAAGA 15503
Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138
| || ||||||||||| | || | || |||||||||| ||| || |||| |
Sbjct 15504 TCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 15563
Query 42139 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 42198
| | ||||| || || || |||| || || || || |||||||| ||||| || |
Sbjct 15564 CGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTTAGGGTCTTGACGA 15623
Query 42199 AGATTTGCATTTTCAC 42214
| || ||||| || ||
Sbjct 15624 AAATCTGCATCTTGAC 15639
>seq169
Length=45351
Score = 86.0 bits (94), Expect = 7e-12
Identities = 131/184 (71%), Gaps = 2/184 (1%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| || ||||| || || | || || |||||||| ||||| ||
Sbjct 32251 CTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAA 32310
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
|| || ||||||||||| | || | | |||||||||| ||| || |||| |||
Sbjct 32311 GATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 32369
Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195
| | | |||||| || || || || | || ||||| || ||||| || ||||| |
Sbjct 32370 TGTCGATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGA 32429
Query 42196 CAAA 42199
| ||
Sbjct 32430 CGAA 32433
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543204264768880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |