Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq30 114 1e-20 seq169 82.4 8e-11 >seq30 Length=92847 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | || || || || || |||||||| ||||| | ||| || |||| Sbjct 12688 AAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTACGACCGTC 12629 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 |||||||||||| || ||| ||||||| |||||||| || || || || || || || || Sbjct 12628 TTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTC 12569 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| ||| || | || || || || || || | || | ||| Sbjct 12568 CTGAATCTTGGACTTGACATTGTCAATAGTGTCCGAGGTCTCAACCTCCAGGGTAATGGT 12509 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| |||| ||| || || || |||||||| Sbjct 12508 CTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 12476 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | || || || || ||||||||||| ||||| | ||| || |||| Sbjct 12460 AAGAACGAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCTGCCAGGGTACGACCGTC 12401 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || ||||||||||| || |||| || ||||||||||| || || || ||||| || || Sbjct 12400 CTCCAGCTGCTTGCCTGCGAAAATCAGGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTC 12341 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| ||| || | || || || || ||||||| || | ||| Sbjct 12340 CTGAATCTTGGACTTGACATTGTCAATAGTGTCCGAGGACTCGACTTCTAGGGTGATGGT 12281 Query 64411 CTTGCCGGTCAAAGTTTTTACGA 64433 ||| ||||| | || || |||| Sbjct 12280 CTTTCCGGTGAGGGTCTTGACGA 12258 Score = 102 bits (112), Expect = 8e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | || || || |||| || || || || ||||||||||| || || Sbjct 12158 ACCACCGCGAAGGCGGAGGACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGC 12099 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| |||||||||||||||| || ||| ||||||| |||||||| || || || Sbjct 12098 AAGGGTGCGACCGTCTTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGG 12039 Query 64336 AATTCCTTCTTTTTCTTGTATTTT 64359 || || || || ||||| || || Sbjct 12038 GATACCCTCCTTATCTTGAATCTT 12015 >seq169 Length=45351 Score = 82.4 bits (90), Expect = 8e-11 Identities = 150/220 (68%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | || || || || | || || || || || |||||||| || || Sbjct 32215 ACCACCACGCAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGC 32274 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | || |||||||||||||| ||| | || || ||||||||||| || || Sbjct 32275 CAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGG 32334 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || ||| || || | || || || || || Sbjct 32335 GATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAGGACTCGAC 32394 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAA 64435 || | || | |||||| || |||| || || |||||| Sbjct 32395 CTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAAA 32434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499636949331080