Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq30 114 1e-20
seq169 82.4 8e-11
>seq30
Length=92847
Score = 114 bits (126), Expect = 1e-20
Identities = 153/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
||| || ||||| | || || || || || |||||||| ||||| | ||| || ||||
Sbjct 12688 AAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTACGACCGTC 12629
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
|||||||||||| || ||| ||||||| |||||||| || || || || || || || ||
Sbjct 12628 TTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTC 12569
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| || || ||| ||| || | || || || || || || | || | |||
Sbjct 12568 CTGAATCTTGGACTTGACATTGTCAATAGTGTCCGAGGTCTCAACCTCCAGGGTAATGGT 12509
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|||||| |||| ||| || || || ||||||||
Sbjct 12508 CTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 12476
Score = 105 bits (116), Expect = 7e-18
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
||| || ||||| | || || || || ||||||||||| ||||| | ||| || ||||
Sbjct 12460 AAGAACGAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCTGCCAGGGTACGACCGTC 12401
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
|| ||||||||||| || |||| || ||||||||||| || || || ||||| || ||
Sbjct 12400 CTCCAGCTGCTTGCCTGCGAAAATCAGGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTC 12341
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| || || ||| ||| || | || || || || ||||||| || | |||
Sbjct 12340 CTGAATCTTGGACTTGACATTGTCAATAGTGTCCGAGGACTCGACTTCTAGGGTGATGGT 12281
Query 64411 CTTGCCGGTCAAAGTTTTTACGA 64433
||| ||||| | || || ||||
Sbjct 12280 CTTTCCGGTGAGGGTCTTGACGA 12258
Score = 102 bits (112), Expect = 8e-17
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| ||||| | | || || || |||| || || || || ||||||||||| || ||
Sbjct 12158 ACCACCGCGAAGGCGGAGGACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGC 12099
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| |||||| |||||||||||||||| || ||| ||||||| |||||||| || || ||
Sbjct 12098 AAGGGTGCGACCGTCTTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGG 12039
Query 64336 AATTCCTTCTTTTTCTTGTATTTT 64359
|| || || || ||||| || ||
Sbjct 12038 GATACCCTCCTTATCTTGAATCTT 12015
>seq169
Length=45351
Score = 82.4 bits (90), Expect = 8e-11
Identities = 150/220 (68%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || |||| | || || || || | || || || || || |||||||| || ||
Sbjct 32215 ACCACCACGCAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGC 32274
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| |||||| | || |||||||||||||| ||| | || || ||||||||||| || ||
Sbjct 32275 CAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGG 32334
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
|| || || || || || || || ||| || || | || || || || ||
Sbjct 32335 GATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAGGACTCGAC 32394
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAA 64435
|| | || | |||||| || |||| || || ||||||
Sbjct 32395 CTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAAA 32434
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499636949331080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |