Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq54 201 1e-46 >seq54 Length=76171 Score = 201 bits (222), Expect = 1e-46 Identities = 493/737 (67%), Gaps = 8/737 (1%) Strand=Plus/Plus Query 93896 CCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGA 93955 |||| || || |||||||| || || || | | || |||||||||| ||||| || Sbjct 18004 CCCCAACTCTTTTCAACGCCGGTACTCCCCAGGCGCAACTGTCTTCGTGCTTCCTCGTGG 18063 Query 93956 CGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCT 94015 | |||| ||| ||| || || | |||| || || || || | |||| Sbjct 18064 ATATGAAGGATGACAGCATTGAGGGTATCTATGACACTCTGAAAACTTGCGCTATGATCT 18123 Query 94016 CAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACA 94075 | || ||||| || || || | | || ||| | | ||||||| ||||| |||| Sbjct 18124 CCAAGATGGCGGGTGGTATTGGCCTGAACGTGCACCGCATTCGTGCCACTGGTTCTTACA 18183 Query 94076 TCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACG 94135 | ||| || || || ||||| ||||| |||| |||||||| || || ||||||||| Sbjct 18184 TTGCCGGCACTAACGGTACCTCGAACGGTATCGTTCCTATGCTGCGTGTGTTCAACAACA 18243 Query 94136 CGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCG 94195 | || || ||||| ||||||||||| | | | ||| |||| || |||| |||| Sbjct 18244 CTGCTCGTTACGTTGACCAGGGTGGCAACAAGCGTCCTGGTGCTTTTGCTATCTACCTCG 18303 Query 94196 AGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATC 94255 |||| ||||||||||| || | ||| |||| || || ||||| |||||||| || Sbjct 18304 AGCCGTGGCACGCGGATGTTTTTGAGTTCCTCGATCTCCGCAAGAATCACGGCAAAGAAG 18363 Query 94256 TGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCG 94315 | | ||| | || || ||| ||||| ||| | || || ||||| ||||| || | Sbjct 18364 AAGTCCGTGCCCGTGATCTTTTCCTGGCTCTGTGGATCCCTGATCTTTTCATGAAGCGTG 18423 Query 94316 TCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGAC- 94374 | || || ||| ||| |||| |||| | || |||||||| || || || ||| | ||| Sbjct 18424 TTGAAAAGAACGCCGAGTGGACTCTTATGTGCCCCAATGAGTGCCCTGGTCTGGCTGACT 18483 Query 94375 GTT-TGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGG-CAAGGCCA 94432 ||| | ||| | | || || | ||||| | || ||| | |||| | || | Sbjct 18484 GTTACGGCGAT-GAG-TTCGAGGCATTGTACGAGAAGTATGAAAAGGAGGGTCGTGGTC- 18540 Query 94433 GGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGG 94492 | | | | | || ||||||||| || ||| |||| | ||| ||||| | Sbjct 18541 GACTGACTCTCAAAGCCCAAAAGCTGTGGTATGCTATCCTGGAAGCTCAGACTGAGACTG 18600 Query 94493 GTACGCCCTACATCTTGTTCAAGGA-CTCTGTCAACGCCAAGTCCAACCAGCAGCACCTC 94551 ||| || | ||| ||| |||||| | ||| |||| |||| |||||| || |||| Sbjct 18601 GTAACCCGTTCATGCTGTACAAGGACCACTG-CAACCGCAAGAGTAACCAGAAGAACCTG 18659 Query 94552 GGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAG 94611 || ||| ||||| || |||||||| |||||| | || || | |||| || ||| Sbjct 18660 GGTACTATCCGCAGCTCCAACCTGTGCACTGAGATTATTGAATACTGTGCTCCTGATGAG 18719 Query 94612 ATTGCTGTGTGTAACCT 94628 ||||||| || ||||| Sbjct 18720 GTTGCTGTCTGCAACCT 18736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494715426661720