Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq54 201 1e-46
>seq54
Length=76171
Score = 201 bits (222), Expect = 1e-46
Identities = 493/737 (67%), Gaps = 8/737 (1%)
Strand=Plus/Plus
Query 93896 CCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGA 93955
|||| || || |||||||| || || || | | || |||||||||| ||||| ||
Sbjct 18004 CCCCAACTCTTTTCAACGCCGGTACTCCCCAGGCGCAACTGTCTTCGTGCTTCCTCGTGG 18063
Query 93956 CGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCT 94015
| |||| ||| ||| || || | |||| || || || || | ||||
Sbjct 18064 ATATGAAGGATGACAGCATTGAGGGTATCTATGACACTCTGAAAACTTGCGCTATGATCT 18123
Query 94016 CAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACA 94075
| || ||||| || || || | | || ||| | | ||||||| ||||| ||||
Sbjct 18124 CCAAGATGGCGGGTGGTATTGGCCTGAACGTGCACCGCATTCGTGCCACTGGTTCTTACA 18183
Query 94076 TCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACG 94135
| ||| || || || ||||| ||||| |||| |||||||| || || |||||||||
Sbjct 18184 TTGCCGGCACTAACGGTACCTCGAACGGTATCGTTCCTATGCTGCGTGTGTTCAACAACA 18243
Query 94136 CGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCG 94195
| || || ||||| ||||||||||| | | | ||| |||| || |||| ||||
Sbjct 18244 CTGCTCGTTACGTTGACCAGGGTGGCAACAAGCGTCCTGGTGCTTTTGCTATCTACCTCG 18303
Query 94196 AGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATC 94255
|||| ||||||||||| || | ||| |||| || || ||||| |||||||| ||
Sbjct 18304 AGCCGTGGCACGCGGATGTTTTTGAGTTCCTCGATCTCCGCAAGAATCACGGCAAAGAAG 18363
Query 94256 TGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCG 94315
| | ||| | || || ||| ||||| ||| | || || ||||| ||||| || |
Sbjct 18364 AAGTCCGTGCCCGTGATCTTTTCCTGGCTCTGTGGATCCCTGATCTTTTCATGAAGCGTG 18423
Query 94316 TCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGAC- 94374
| || || ||| ||| |||| |||| | || |||||||| || || || ||| | |||
Sbjct 18424 TTGAAAAGAACGCCGAGTGGACTCTTATGTGCCCCAATGAGTGCCCTGGTCTGGCTGACT 18483
Query 94375 GTT-TGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGG-CAAGGCCA 94432
||| | ||| | | || || | ||||| | || ||| | |||| | || |
Sbjct 18484 GTTACGGCGAT-GAG-TTCGAGGCATTGTACGAGAAGTATGAAAAGGAGGGTCGTGGTC- 18540
Query 94433 GGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGG 94492
| | | | | || ||||||||| || ||| |||| | ||| ||||| |
Sbjct 18541 GACTGACTCTCAAAGCCCAAAAGCTGTGGTATGCTATCCTGGAAGCTCAGACTGAGACTG 18600
Query 94493 GTACGCCCTACATCTTGTTCAAGGA-CTCTGTCAACGCCAAGTCCAACCAGCAGCACCTC 94551
||| || | ||| ||| |||||| | ||| |||| |||| |||||| || ||||
Sbjct 18601 GTAACCCGTTCATGCTGTACAAGGACCACTG-CAACCGCAAGAGTAACCAGAAGAACCTG 18659
Query 94552 GGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAG 94611
|| ||| ||||| || |||||||| |||||| | || || | |||| || |||
Sbjct 18660 GGTACTATCCGCAGCTCCAACCTGTGCACTGAGATTATTGAATACTGTGCTCCTGATGAG 18719
Query 94612 ATTGCTGTGTGTAACCT 94628
||||||| || |||||
Sbjct 18720 GTTGCTGTCTGCAACCT 18736
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494715426661720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |