Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq85 147 2e-30 seq59 95.1 1e-14 seq30 86.0 6e-12 >seq85 Length=66049 Score = 147 bits (162), Expect = 2e-30 Identities = 347/522 (66%), Gaps = 29/522 (6%) Strand=Plus/Plus Query 52329 CCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCG---CC 52385 || ||| ||||| |||||| | ||||| |||||||||||| ||||| | | Sbjct 2993 CCCTGCATTCGCCGCAAGGCTGACTGGGCCCTGAAGTGGATCGC---CGACAAGGAGTCT 3049 Query 52386 ACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGC 52445 || | ||| |||| | || ||||| ||| |||||||| | || || || || Sbjct 3050 ACCTTTGCCCAGCGTCTCGTTGCCTTTGCCGCTGTCGAGGGTATCTTCTTCTCGGGTGCT 3109 Query 52446 TTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAAC 52505 |||||| ||||||| | | | | || | ||||| || ||||| ||| |||| Sbjct 3110 TTTGCCTCCATCTTCTGGCTGCGCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAAC 3169 Query 52506 GAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT---CTACTAC--- 52559 ||| |||| || || || || || || ||||| |||||||| ||||| ||||| | Sbjct 3170 GAGCTGATCTCCCGTGATGAGGGCCTTCACACTGACTTTGCTTGCCTGCTCTACTCCCAC 3229 Query 52560 ---AAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAG 52616 || | ||| | | | || || | ||||| ||| | || Sbjct 3230 CTTAACAACCGCCCCAGCAAGCAACTGATTGAGGACATCATC------------ACCGAT 3277 Query 52617 GCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATG 52676 || || ||||| || |||||||| || || | || ||||| | ||||| |||||| Sbjct 3278 GCTGTTGCTATTGAGAAGGAGTTCTTGACTGAGGCCCTGCCCTGTGCCCTGCTTGGCATG 3337 Query 52677 AACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTC 52736 ||||| | |||| ||||| || ||||| || || ||||| || || ||| Sbjct 3338 AACGCCGACCTCATGAAGACCTACATTGAATTTGTCGCCGACCGTCTCCTGATGGCCCTC 3397 Query 52737 GGGCA-GCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCT 52795 || | | ||| || || ||| || |||| || ||||| |||||| | ||||| ||||| Sbjct 3398 GGCAACGACAAGGT-CTACAAGGCCAGCAACCCCTTTGACTTTATGGAGAACATCTCGCT 3456 Query 52796 TGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 || |||||||||||||| ||||||||||| |||| ||| || Sbjct 3457 TGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGCCGACTA 3498 >seq59 Length=73848 Score = 95.1 bits (104), Expect = 1e-14 Identities = 137/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || || |||||||| || ||||| ||||| || || || || | | ||| Sbjct 15444 CCTTCTGGATATTGTAGTCCGCCAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCAAAGA 15503 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543 | || ||||| ||||||||||| || || || ||||| ||| || || | |||| Sbjct 15504 TCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG- 15562 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | |||||| | ||||| ||||||| || | ||| ||||| || || || || || Sbjct 15563 TCGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTTAGGGTCTTGACG 15622 Query 138604 AAAATCTGCAT 138614 ||||||||||| Sbjct 15623 AAAATCTGCAT 15633 >seq30 Length=92847 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | ||| | ||| | | |||||||| || ||||||||||| Sbjct 12703 GCCACCACGAAGACGAAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGC 12644 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||||| ||| || || || || || | | | || |||||||| || ||||| || Sbjct 12643 CAGGGTACGACCGTCTTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGG 12584 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564 || || || ||||| ||| | || | || |||| || | ||||| | | ||| Sbjct 12583 GATGCCCTCCTTGTC-CTGAATCTTGGACTTGACATTG-TCAATAGTGTCCGAGGTCTCA 12526 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| | || | || || ||||||||||| || ||||| || ||||| Sbjct 12525 ACCTCCAGGGTAATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 12476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496254602477040