Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq85 147 2e-30
seq59 95.1 1e-14
seq30 86.0 6e-12
>seq85
Length=66049
Score = 147 bits (162), Expect = 2e-30
Identities = 347/522 (66%), Gaps = 29/522 (6%)
Strand=Plus/Plus
Query 52329 CCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCG---CC 52385
|| ||| ||||| |||||| | ||||| |||||||||||| ||||| | |
Sbjct 2993 CCCTGCATTCGCCGCAAGGCTGACTGGGCCCTGAAGTGGATCGC---CGACAAGGAGTCT 3049
Query 52386 ACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGC 52445
|| | ||| |||| | || ||||| ||| |||||||| | || || || ||
Sbjct 3050 ACCTTTGCCCAGCGTCTCGTTGCCTTTGCCGCTGTCGAGGGTATCTTCTTCTCGGGTGCT 3109
Query 52446 TTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAAC 52505
|||||| ||||||| | | | | || | ||||| || ||||| ||| ||||
Sbjct 3110 TTTGCCTCCATCTTCTGGCTGCGCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAAC 3169
Query 52506 GAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT---CTACTAC--- 52559
||| |||| || || || || || || ||||| |||||||| ||||| ||||| |
Sbjct 3170 GAGCTGATCTCCCGTGATGAGGGCCTTCACACTGACTTTGCTTGCCTGCTCTACTCCCAC 3229
Query 52560 ---AAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAG 52616
|| | ||| | | | || || | ||||| ||| | ||
Sbjct 3230 CTTAACAACCGCCCCAGCAAGCAACTGATTGAGGACATCATC------------ACCGAT 3277
Query 52617 GCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATG 52676
|| || ||||| || |||||||| || || | || ||||| | ||||| ||||||
Sbjct 3278 GCTGTTGCTATTGAGAAGGAGTTCTTGACTGAGGCCCTGCCCTGTGCCCTGCTTGGCATG 3337
Query 52677 AACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTC 52736
||||| | |||| ||||| || ||||| || || ||||| || || |||
Sbjct 3338 AACGCCGACCTCATGAAGACCTACATTGAATTTGTCGCCGACCGTCTCCTGATGGCCCTC 3397
Query 52737 GGGCA-GCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCT 52795
|| | | ||| || || ||| || |||| || ||||| |||||| | ||||| |||||
Sbjct 3398 GGCAACGACAAGGT-CTACAAGGCCAGCAACCCCTTTGACTTTATGGAGAACATCTCGCT 3456
Query 52796 TGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
|| |||||||||||||| ||||||||||| |||| ||| ||
Sbjct 3457 TGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGCCGACTA 3498
>seq59
Length=73848
Score = 95.1 bits (104), Expect = 1e-14
Identities = 137/191 (72%), Gaps = 2/191 (1%)
Strand=Plus/Plus
Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484
|||| || || |||||||| || ||||| ||||| || || || || | | |||
Sbjct 15444 CCTTCTGGATATTGTAGTCCGCCAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCAAAGA 15503
Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543
| || ||||| ||||||||||| || || || ||||| ||| || || | ||||
Sbjct 15504 TCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG- 15562
Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603
|| | |||||| | ||||| ||||||| || | ||| ||||| || || || || ||
Sbjct 15563 TCGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTTAGGGTCTTGACG 15622
Query 138604 AAAATCTGCAT 138614
|||||||||||
Sbjct 15623 AAAATCTGCAT 15633
>seq30
Length=92847
Score = 86.0 bits (94), Expect = 6e-12
Identities = 159/230 (69%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| || || | ||| | ||| | ||| | | |||||||| || |||||||||||
Sbjct 12703 GCCACCACGAAGACGAAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGC 12644
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
|| ||||| ||| || || || || || | | | || |||||||| || ||||| ||
Sbjct 12643 CAGGGTACGACCGTCTTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGG 12584
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564
|| || || ||||| ||| | || | || |||| || | ||||| | | |||
Sbjct 12583 GATGCCCTCCTTGTC-CTGAATCTTGGACTTGACATTG-TCAATAGTGTCCGAGGTCTCA 12526
Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||||| | || | || || ||||||||||| || ||||| || |||||
Sbjct 12525 ACCTCCAGGGTAATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 12476
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496254602477040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |