Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq85 143 3e-29 seq368 89.7 6e-13 >seq85 Length=66049 Score = 143 bits (158), Expect = 3e-29 Identities = 567/877 (65%), Gaps = 29/877 (3%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| |||| ||||||||||||||||| ||||| ||| | || ||| |||||||| Sbjct 3499 GTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGCGAGATGTTCTCCAT 3440 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGC-ACCCCAATCTGTTTGAG 127344 ||| ||||| ||||| | | || | | | |||| | | | ||| || Sbjct 3439 AAAGTCAAAGGGGTTGCTGGCCTTGTAGACCTTGTCGTTGCCGAGGGCCATC------AG 3386 Query 127345 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 127404 |||||| || | ||| | |||||||| ||| || | |||||| || | || Sbjct 3385 GAGACGGTCGGCGACAAATTCAATGTAGGTCTTCATGAGGTCGGCGTTCATGCCAAGCAG 3326 Query 127405 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464 | ||| || || || || | |||| |||||||||| | ||||| || | ||| Sbjct 3325 GGCACAGGGCAGGGCCTCAGTCAAGAACTCCTTCTCAATAGCAACAGCATCGGTGATGAT 3266 Query 127465 GGCGTGAAT-AGTGTCCACCCCAGGTCTATTGCGTAAAGTCTT-GAAGAGTTCCACAGCA 127522 | | | ||| ||| | | | || | ||| ||| || | |||| |||| Sbjct 3265 GTCCTCAATCAGT-TGCTTGCTGGGGCGGTTGT-TAAGGTGGGAGTAGAGCAGGCAAGCA 3208 Query 127523 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 127582 || || ||| || ||||| ||||||||||| || || || |||||| |||||| ||| Sbjct 3207 AAGTCAGTGTGAAGGCCCTCATCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGC 3148 Query 127583 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 127642 |||||||| ||||| || |||||| || | ||| | || ||||||||||| ||| Sbjct 3147 ATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCAAAAGCACCCGAGAAGAAGATACCC 3088 Query 127643 TCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACT--TTGT-ATCAAAC 127699 || ||| || || |||| ||||||| |||||||| |||| |||| | | | Sbjct 3087 TCGACAGCGGCAAAGGCAACGAGACGCTGGGCAAAGG---TAGACTCCTTGTCGGCGATC 3031 Query 127700 CACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAG 127759 ||||||| ||||| | ||||| || || || | || | || || | || Sbjct 3030 CACTTCAGGGCCCAGTCAGCCTTGCGGCGAATGCAGGGAATAGTATCAATGGCGTTGAAC 2971 Query 127760 AGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCG 127819 || | | | || || |||||||| |||| ||||| || || || ||| Sbjct 2970 AGGTAGGAACGCTGGGCGGGCTCCTTGATGTAGGTATCAATGAGCAGCGAGTAGGTCTCG 2911 Query 127820 CCGTGGACCATTT-CATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTG 127878 ||| | ||| ||| || | ||| | | || || |||| || ||| ||||| Sbjct 2910 GAGTGAATGTTTTCCATCAT-GATCTGGAAACCATAAAAGCAGCGGGCCTCGGGAATCTG 2852 Query 127879 TACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAA 127938 ||||| ||| ||| | | | ||||| || || || || || | ||||| Sbjct 2851 GACCTCGGCGGAGAAACGCTCAACCAAGTTCTCGTTGACGATACCGTCAGAGGCGGCAAA 2792 Query 127939 AAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTC 127995 || |||||||| | || || ||| || | | ||||| || | |||||||| Sbjct 2791 GAAAGCCAGGATGTGGGAGATAAAGAACTGCTCGTCTTTGTTCATGCGGTTGTTCCAGTC 2732 Query 127996 GTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA-ATTGCTCATTTGAGCCTTCT 128054 || ||||||||| || ||||| | |||||| || ||||| | | | | ||||||| Sbjct 2731 GTGGAGATCCTTGGACAGATCAATCTCCTCGGCGGTCCAGAAAGAAGCCTCG-GCCTTCT 2673 Query 128055 TATAGAGTTCCCAGAGGTGGGGATACTTCAGGGGGAA 128091 | || | || ||||| | | | ||||| | |||||| Sbjct 2672 TGTACATTTGCCAGATCTCGTGGTACTTGATGGGGAA 2636 >seq368 Length=24549 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 12882 GCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGATA 12941 || ||||| || ||||| || | |||||||| ||||| || || |||| | Sbjct 8685 GCATCAATCTCATCAATAAAGATAATACACGGCGCATTTTTCCGCGCTGTCGCAAACAAG 8626 Query 12942 TCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGA-ACA 13000 || ||||| | | | |||||||| ||||||||||||||||| | | | || ||| Sbjct 8625 TCACGCACACGCGACGGCCCGACACCAACAAACATCTCCACAAACTCCGAACCAGAGACA 8566 Query 13001 TTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGT 13060 | || || || || ||| || ||||| |||| ||| || || ||||| ||||| Sbjct 8565 CT-GAAAAACGGAACTCCGGACTCGCCCGCCGTGGCCTTGGCCAGCAGCGTCTTTCCCGT 8507 Query 13061 CCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACCA 13106 || || |||| ||| | ||||||||| |||||| |||||||| Sbjct 8506 ACCGGGCGGTCCCGAGAGGATGGCACCACGCGGGATCTTGGCACCA 8461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613497560268120