Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq85 143 3e-29
seq368 89.7 6e-13
>seq85
Length=66049
Score = 143 bits (158), Expect = 3e-29
Identities = 567/877 (65%), Gaps = 29/877 (3%)
Strand=Plus/Minus
Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290
|||||| |||| ||||||||||||||||| ||||| ||| | || ||| ||||||||
Sbjct 3499 GTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGCGAGATGTTCTCCAT 3440
Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGC-ACCCCAATCTGTTTGAG 127344
||| ||||| ||||| | | || | | | |||| | | | ||| ||
Sbjct 3439 AAAGTCAAAGGGGTTGCTGGCCTTGTAGACCTTGTCGTTGCCGAGGGCCATC------AG 3386
Query 127345 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 127404
|||||| || | ||| | |||||||| ||| || | |||||| || | ||
Sbjct 3385 GAGACGGTCGGCGACAAATTCAATGTAGGTCTTCATGAGGTCGGCGTTCATGCCAAGCAG 3326
Query 127405 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464
| ||| || || || || | |||| |||||||||| | ||||| || | |||
Sbjct 3325 GGCACAGGGCAGGGCCTCAGTCAAGAACTCCTTCTCAATAGCAACAGCATCGGTGATGAT 3266
Query 127465 GGCGTGAAT-AGTGTCCACCCCAGGTCTATTGCGTAAAGTCTT-GAAGAGTTCCACAGCA 127522
| | | ||| ||| | | | || | ||| ||| || | |||| ||||
Sbjct 3265 GTCCTCAATCAGT-TGCTTGCTGGGGCGGTTGT-TAAGGTGGGAGTAGAGCAGGCAAGCA 3208
Query 127523 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 127582
|| || ||| || ||||| ||||||||||| || || || |||||| |||||| |||
Sbjct 3207 AAGTCAGTGTGAAGGCCCTCATCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGC 3148
Query 127583 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 127642
|||||||| ||||| || |||||| || | ||| | || ||||||||||| |||
Sbjct 3147 ATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCAAAAGCACCCGAGAAGAAGATACCC 3088
Query 127643 TCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACT--TTGT-ATCAAAC 127699
|| ||| || || |||| ||||||| |||||||| |||| |||| | | |
Sbjct 3087 TCGACAGCGGCAAAGGCAACGAGACGCTGGGCAAAGG---TAGACTCCTTGTCGGCGATC 3031
Query 127700 CACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAG 127759
||||||| ||||| | ||||| || || || | || | || || | ||
Sbjct 3030 CACTTCAGGGCCCAGTCAGCCTTGCGGCGAATGCAGGGAATAGTATCAATGGCGTTGAAC 2971
Query 127760 AGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCG 127819
|| | | | || || |||||||| |||| ||||| || || || |||
Sbjct 2970 AGGTAGGAACGCTGGGCGGGCTCCTTGATGTAGGTATCAATGAGCAGCGAGTAGGTCTCG 2911
Query 127820 CCGTGGACCATTT-CATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTG 127878
||| | ||| ||| || | ||| | | || || |||| || ||| |||||
Sbjct 2910 GAGTGAATGTTTTCCATCAT-GATCTGGAAACCATAAAAGCAGCGGGCCTCGGGAATCTG 2852
Query 127879 TACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAA 127938
||||| ||| ||| | | | ||||| || || || || || | |||||
Sbjct 2851 GACCTCGGCGGAGAAACGCTCAACCAAGTTCTCGTTGACGATACCGTCAGAGGCGGCAAA 2792
Query 127939 AAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTC 127995
|| |||||||| | || || ||| || | | ||||| || | ||||||||
Sbjct 2791 GAAAGCCAGGATGTGGGAGATAAAGAACTGCTCGTCTTTGTTCATGCGGTTGTTCCAGTC 2732
Query 127996 GTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA-ATTGCTCATTTGAGCCTTCT 128054
|| ||||||||| || ||||| | |||||| || ||||| | | | | |||||||
Sbjct 2731 GTGGAGATCCTTGGACAGATCAATCTCCTCGGCGGTCCAGAAAGAAGCCTCG-GCCTTCT 2673
Query 128055 TATAGAGTTCCCAGAGGTGGGGATACTTCAGGGGGAA 128091
| || | || ||||| | | | ||||| | ||||||
Sbjct 2672 TGTACATTTGCCAGATCTCGTGGTACTTGATGGGGAA 2636
>seq368
Length=24549
Score = 89.7 bits (98), Expect = 6e-13
Identities = 157/226 (69%), Gaps = 2/226 (1%)
Strand=Plus/Minus
Query 12882 GCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGATA 12941
|| ||||| || ||||| || | |||||||| ||||| || || |||| |
Sbjct 8685 GCATCAATCTCATCAATAAAGATAATACACGGCGCATTTTTCCGCGCTGTCGCAAACAAG 8626
Query 12942 TCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGA-ACA 13000
|| ||||| | | | |||||||| ||||||||||||||||| | | | || |||
Sbjct 8625 TCACGCACACGCGACGGCCCGACACCAACAAACATCTCCACAAACTCCGAACCAGAGACA 8566
Query 13001 TTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGT 13060
| || || || || ||| || ||||| |||| ||| || || ||||| |||||
Sbjct 8565 CT-GAAAAACGGAACTCCGGACTCGCCCGCCGTGGCCTTGGCCAGCAGCGTCTTTCCCGT 8507
Query 13061 CCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACCA 13106
|| || |||| ||| | ||||||||| |||||| ||||||||
Sbjct 8506 ACCGGGCGGTCCCGAGAGGATGGCACCACGCGGGATCTTGGCACCA 8461
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613497560268120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |