Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq54 158 2e-33 seq85 136 6e-27 >seq54 Length=76171 Score = 158 bits (174), Expect = 2e-33 Identities = 435/656 (66%), Gaps = 12/656 (2%) Strand=Plus/Minus Query 203885 AGATAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGT 203944 || ||||||||||| ||||| || ||| || ||| || | ||||||| | | | Sbjct 19618 AGGTAGTACATGCCAGTCTTCAGACCCAGCTTCCAACCAGTGAAGTGCATGCTGGTGATT 19559 Query 203945 TTGCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGC 204004 || | || | |||| || ||| ||||||||||| || || |||||||| |||||| Sbjct 19558 TTACCCATGGTGGGATCCTTCATATGAATGTTCAGCGATTGCGACTGGTCGAT-AAAGGC 19500 Query 204005 GCC-CGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAA 204063 || ||||| || ||||| | || || || ||| ||||||||||| || |||||| | Sbjct 19499 ACCACGATCAGCAGCCATCTGGACAACCGTACGCTGAGAAATCTCCCATACAGTCTTGTA 19440 Query 204064 CACGTCTCTGGTGTGTTGAGGCACATCTTCCCACGTCCTGA-TCGAGCCGTTGTCGGCCA 204122 || | || ||| ||| | || | || ||| | || || |||||||| | Sbjct 19439 CAGACCCTTGATGTCAGCAGGAATG-CTGGGAATGTTTTGAATTGAACCATTGTCGGCAA 19381 Query 204123 TCAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGT 204182 | | | || || | || ||||| ||| | | ||| || |||| ||| Sbjct 19380 TGATGCGGTTCTTCATGGAATCAGACCACAGGCCAAGGTCAACCAGGTCACGCAACAGCC 19321 Query 204183 GGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGA 204242 |||||||| || ||| || || || | || || | || | | | |||| |||| Sbjct 19320 AGGGGTTGACGACCTGGAACTCGCCAGCTAGGACACGGCGCTGGTAAATGTTGGAGGTGT 19261 Query 204243 ATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAG 204302 | || ||||| ||||| ||||| | |||||| | || ||||| ||||||||||| | Sbjct 19260 AGGGCTCGAAGCATTCGTTATTGCCCAGAATCTGGGAAGTACTGGCGGTGGGCATGGGCG 19201 Query 204303 CCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGT 204362 | || || | |||||||| | ||||| | | || | |||||| |||||||||| Sbjct 19200 CAAGTAGTAAAGAGTTGCGGATACCGTGCTGCTTGATCTGTTCCTTCAGTGAGGTCCAGT 19141 Query 204363 CGTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTG 204422 | | ||||||| | || ||||||||| ||||| | |||||| || || | Sbjct 19140 CCCAGAGGTCACTGGGAGTGACATTCCACATGTCAAACTGCAGGATGCCCTGGGACACAG 19081 Query 204423 GGCTGCCCTTGTACGTCGGATAAGGCTGATCCT-CTTCT--GCCAGCTTGCACGAGGCGG 204479 | ||||| ||| |||| || || ||| ||||| || | || ||||||||| Sbjct 19080 GCGAGCCCTCGTAGGTCGAGTA---CTTGCCCTCCTTCTGAGCAATCTCGCACGAGGCCT 19024 Query 204480 CCATGGCGTGATAGTACATGGTCTCAAAGATCTGAACGTTTAATCTGGC-GGCCTC 204534 | | || | ||| |||||||| ||||| ||| | || | ||||| |||||| Sbjct 19023 CAAGAGCAGCGTGGTAAATGGTCTCGAAGATATGAGTG-TTGAGCTGGCGGGCCTC 18969 >seq85 Length=66049 Score = 136 bits (150), Expect = 6e-27 Identities = 552/856 (64%), Gaps = 23/856 (3%) Strand=Plus/Minus Query 159639 GCGACACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACC 159698 ||||||| ||||||||| |||||||||||||| | | || || ||||| || Sbjct 3492 GCGACACG--CTTCTCGAAGAAGTTGGTCTTGCCACCAAGCGAGATGTTCTCCATAAAGT 3435 Query 159699 CGAATGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTG 159758 | || ||||| | | | ||| ||| ||||| ||| ||| | | ||| | Sbjct 3434 CAAAGGGGTTGCTGGCCTTGTAGACCTTGTCGTTGCCGAGGGCCATCAGGAGACGGTCGG 3375 Query 159759 CCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGA 159818 | |||||||| |||||| | ||| | || ||| || || ||||| | ||| | Sbjct 3374 CGACAAATTCAATGTAGGTCTTCATGAGGTCGGCGTTCATGCCAAGCAGGGCACAGGGCA 3315 Query 159819 GCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACAC 159878 | || || | || |||||||||||||| | || || ||||| | || | | | Sbjct 3314 GGGCCTCAGTCAAGAACTCCTTCTCAATAGCAACAGCATCGGTGATGATGTCCTCAATCA 3255 Query 159879 GTT-CGTACCCCGGC--TTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGC 159935 ||| | | | ||| ||| || |||| | | || ||||| |||||||| Sbjct 3254 GTTGCTTGCTGGGGCGGTTGTT---AAGGTGGGAGT---AGAGCAGGCAAGCAAAGTCAG 3201 Query 159936 AGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCC 159995 ||| || ||||| || || ||||| | ||||||||| | | | || || ||||||| | Sbjct 3200 TGTGAAGGCCCTCATCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGAC 3141 Query 159996 CACGCGGTTTG---AGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCA 160052 ||||| ||| ||||| || |||| ||||||||||| || ||||| ||||| | Sbjct 3140 CACGC---TTGCGCAGCCAGAAGATGGAGGCAAAAGCACCCGAGAAGAAGATACCCTCGA 3084 Query 160053 CGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTT 160112 | || ||||| || ||||| | || |||| | | | |||| | ||||| | Sbjct 3083 CAGCGGCAAAGGCAACGAGACGCTGGGCAAAGGTAGACTCCTTGTCGGCGATCCACTTCA 3024 Query 160113 TGGCCCATTCAGCCTTCTTTGCG-ATGCACGGCATGCGCTCGACGGCGTTAAACAATCTG 160171 |||||| |||||||| ||| ||||| || || || | |||||| |||| | Sbjct 3023 GGGCCCAGTCAGCCTT-GCGGCGAATGCAGGGAATAGTATCAATGGCGTTGAACAGGTAG 2965 Query 160172 TCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGC 160231 ||| |||||||| ||| |||| ||| |||||| | || | ||| Sbjct 2964 GAACGCTGGGCGGGCTCCTTGATGTAGGTATCAATGAGCAGCGAGTAGGTCTCGGAGTGA 2905 Query 160232 ACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCC 160291 | ||||| || ||||| || || || | ||||| || ||| ||||| Sbjct 2904 ATGTTTTCCATCATGATCTGGAAACCATAAAAGCAGCGGGCCTCGGGAATCTGGACCTCG 2845 Query 160292 TGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCC 160351 | ||| | | | ||| || | || || | ||||| | ||| |||||||||||| Sbjct 2844 GCGGAGAAACGCTCAACCAAGTTCTCGTTGACGATACCGTCAGAGGCGGCAAAGAAAGCC 2785 Query 160352 AACACGTGAGAGATGAAATGTCT-CTCGTCTTTGTTGAGTCTCTTTTCCCAGT-GTGTCA 160409 | | ||| ||||| ||| || |||||||||||| | | || | ||||| ||| | Sbjct 2784 AGGATGTGGGAGAT-AAAGAACTGCTCGTCTTTGTTCATGCGGTTGTTCCAGTCGTG-GA 2727 Query 160410 CGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACA 160469 || | || || ||||| ||| || ||| |||| | ||||| || | ||||||| Sbjct 2726 GATCCTTGGACAGATCAATCTCCTCGGCGGTCCAGAAAGAAGCCTCGGCCTTCTTGTACA 2667 Query 160470 TGGCCCAGATGGCGTG 160485 | |||||| |||| Sbjct 2666 TTTGCCAGATCTCGTG 2651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795142706123920