Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq54 158 2e-33
seq85 136 6e-27
>seq54
Length=76171
Score = 158 bits (174), Expect = 2e-33
Identities = 435/656 (66%), Gaps = 12/656 (2%)
Strand=Plus/Minus
Query 203885 AGATAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGT 203944
|| ||||||||||| ||||| || ||| || ||| || | ||||||| | | |
Sbjct 19618 AGGTAGTACATGCCAGTCTTCAGACCCAGCTTCCAACCAGTGAAGTGCATGCTGGTGATT 19559
Query 203945 TTGCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGC 204004
|| | || | |||| || ||| ||||||||||| || || |||||||| ||||||
Sbjct 19558 TTACCCATGGTGGGATCCTTCATATGAATGTTCAGCGATTGCGACTGGTCGAT-AAAGGC 19500
Query 204005 GCC-CGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAA 204063
|| ||||| || ||||| | || || || ||| ||||||||||| || |||||| |
Sbjct 19499 ACCACGATCAGCAGCCATCTGGACAACCGTACGCTGAGAAATCTCCCATACAGTCTTGTA 19440
Query 204064 CACGTCTCTGGTGTGTTGAGGCACATCTTCCCACGTCCTGA-TCGAGCCGTTGTCGGCCA 204122
|| | || ||| ||| | || | || ||| | || || |||||||| |
Sbjct 19439 CAGACCCTTGATGTCAGCAGGAATG-CTGGGAATGTTTTGAATTGAACCATTGTCGGCAA 19381
Query 204123 TCAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGT 204182
| | | || || | || ||||| ||| | | ||| || |||| |||
Sbjct 19380 TGATGCGGTTCTTCATGGAATCAGACCACAGGCCAAGGTCAACCAGGTCACGCAACAGCC 19321
Query 204183 GGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGA 204242
|||||||| || ||| || || || | || || | || | | | |||| ||||
Sbjct 19320 AGGGGTTGACGACCTGGAACTCGCCAGCTAGGACACGGCGCTGGTAAATGTTGGAGGTGT 19261
Query 204243 ATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAG 204302
| || ||||| ||||| ||||| | |||||| | || ||||| ||||||||||| |
Sbjct 19260 AGGGCTCGAAGCATTCGTTATTGCCCAGAATCTGGGAAGTACTGGCGGTGGGCATGGGCG 19201
Query 204303 CCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGT 204362
| || || | |||||||| | ||||| | | || | |||||| ||||||||||
Sbjct 19200 CAAGTAGTAAAGAGTTGCGGATACCGTGCTGCTTGATCTGTTCCTTCAGTGAGGTCCAGT 19141
Query 204363 CGTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTG 204422
| | ||||||| | || ||||||||| ||||| | |||||| || || |
Sbjct 19140 CCCAGAGGTCACTGGGAGTGACATTCCACATGTCAAACTGCAGGATGCCCTGGGACACAG 19081
Query 204423 GGCTGCCCTTGTACGTCGGATAAGGCTGATCCT-CTTCT--GCCAGCTTGCACGAGGCGG 204479
| ||||| ||| |||| || || ||| ||||| || | || |||||||||
Sbjct 19080 GCGAGCCCTCGTAGGTCGAGTA---CTTGCCCTCCTTCTGAGCAATCTCGCACGAGGCCT 19024
Query 204480 CCATGGCGTGATAGTACATGGTCTCAAAGATCTGAACGTTTAATCTGGC-GGCCTC 204534
| | || | ||| |||||||| ||||| ||| | || | ||||| ||||||
Sbjct 19023 CAAGAGCAGCGTGGTAAATGGTCTCGAAGATATGAGTG-TTGAGCTGGCGGGCCTC 18969
>seq85
Length=66049
Score = 136 bits (150), Expect = 6e-27
Identities = 552/856 (64%), Gaps = 23/856 (3%)
Strand=Plus/Minus
Query 159639 GCGACACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACC 159698
||||||| ||||||||| |||||||||||||| | | || || ||||| ||
Sbjct 3492 GCGACACG--CTTCTCGAAGAAGTTGGTCTTGCCACCAAGCGAGATGTTCTCCATAAAGT 3435
Query 159699 CGAATGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTG 159758
| || ||||| | | | ||| ||| ||||| ||| ||| | | ||| |
Sbjct 3434 CAAAGGGGTTGCTGGCCTTGTAGACCTTGTCGTTGCCGAGGGCCATCAGGAGACGGTCGG 3375
Query 159759 CCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGA 159818
| |||||||| |||||| | ||| | || ||| || || ||||| | ||| |
Sbjct 3374 CGACAAATTCAATGTAGGTCTTCATGAGGTCGGCGTTCATGCCAAGCAGGGCACAGGGCA 3315
Query 159819 GCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACAC 159878
| || || | || |||||||||||||| | || || ||||| | || | | |
Sbjct 3314 GGGCCTCAGTCAAGAACTCCTTCTCAATAGCAACAGCATCGGTGATGATGTCCTCAATCA 3255
Query 159879 GTT-CGTACCCCGGC--TTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGC 159935
||| | | | ||| ||| || |||| | | || ||||| ||||||||
Sbjct 3254 GTTGCTTGCTGGGGCGGTTGTT---AAGGTGGGAGT---AGAGCAGGCAAGCAAAGTCAG 3201
Query 159936 AGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCC 159995
||| || ||||| || || ||||| | ||||||||| | | | || || ||||||| |
Sbjct 3200 TGTGAAGGCCCTCATCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGAC 3141
Query 159996 CACGCGGTTTG---AGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCA 160052
||||| ||| ||||| || |||| ||||||||||| || ||||| ||||| |
Sbjct 3140 CACGC---TTGCGCAGCCAGAAGATGGAGGCAAAAGCACCCGAGAAGAAGATACCCTCGA 3084
Query 160053 CGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTT 160112
| || ||||| || ||||| | || |||| | | | |||| | ||||| |
Sbjct 3083 CAGCGGCAAAGGCAACGAGACGCTGGGCAAAGGTAGACTCCTTGTCGGCGATCCACTTCA 3024
Query 160113 TGGCCCATTCAGCCTTCTTTGCG-ATGCACGGCATGCGCTCGACGGCGTTAAACAATCTG 160171
|||||| |||||||| ||| ||||| || || || | |||||| |||| |
Sbjct 3023 GGGCCCAGTCAGCCTT-GCGGCGAATGCAGGGAATAGTATCAATGGCGTTGAACAGGTAG 2965
Query 160172 TCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGC 160231
||| |||||||| ||| |||| ||| |||||| | || | |||
Sbjct 2964 GAACGCTGGGCGGGCTCCTTGATGTAGGTATCAATGAGCAGCGAGTAGGTCTCGGAGTGA 2905
Query 160232 ACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCC 160291
| ||||| || ||||| || || || | ||||| || ||| |||||
Sbjct 2904 ATGTTTTCCATCATGATCTGGAAACCATAAAAGCAGCGGGCCTCGGGAATCTGGACCTCG 2845
Query 160292 TGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCC 160351
| ||| | | | ||| || | || || | ||||| | ||| ||||||||||||
Sbjct 2844 GCGGAGAAACGCTCAACCAAGTTCTCGTTGACGATACCGTCAGAGGCGGCAAAGAAAGCC 2785
Query 160352 AACACGTGAGAGATGAAATGTCT-CTCGTCTTTGTTGAGTCTCTTTTCCCAGT-GTGTCA 160409
| | ||| ||||| ||| || |||||||||||| | | || | ||||| ||| |
Sbjct 2784 AGGATGTGGGAGAT-AAAGAACTGCTCGTCTTTGTTCATGCGGTTGTTCCAGTCGTG-GA 2727
Query 160410 CGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACA 160469
|| | || || ||||| ||| || ||| |||| | ||||| || | |||||||
Sbjct 2726 GATCCTTGGACAGATCAATCTCCTCGGCGGTCCAGAAAGAAGCCTCGGCCTTCTTGTACA 2667
Query 160470 TGGCCCAGATGGCGTG 160485
| |||||| ||||
Sbjct 2666 TTTGCCAGATCTCGTG 2651
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795142706123920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |