Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq30 127 5e-24
seq169 125 2e-23
seq59 113 1e-19
>seq30
Length=92847
Score = 127 bits (140), Expect = 5e-24
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | || || || || ||||| |||||||| |||| ||||||||| |||| ||
Sbjct 12696 CGAAGACGAAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTA 12637
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || ||||| ||||||||||| || || |||||||||||||| ||||| || ||
Sbjct 12636 CGACCGTCTTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGGATGCCC 12577
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||||||||| ||| || || | ||||| | || || || ||||
Sbjct 12576 TCCTTGTCCTGAATCTTGGACTTGACATTGTCAATAGTGTCCGAGGTCTCAACCTCCAGG 12517
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || ||||| || || ||||| || ||||| |||||
Sbjct 12516 GTAATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTG 12479
Score = 116 bits (128), Expect = 9e-21
Identities = 145/199 (73%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | ||||| ||||| || || |||||||| || | ||||||||| || | ||
Sbjct 12151 CGAAGGCGGAGGACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGCAAGGGTG 12092
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || ||||| ||||||||||| || || |||||||||||||| ||||| || ||
Sbjct 12091 CGACCGTCTTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGGATACCC 12032
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| || |||||||| || ||| |||| |||||||| | ||| || || |
Sbjct 12031 TCCTTATCTTGAATCTTGGATTTGACGTTGTCGATGGTGTCTGACGATTCAACCTCGAGG 11972
Query 199589 GTGATCGTCTTACCCGTGA 199607
||||| ||||| || ||||
Sbjct 11971 GTGATGGTCTTGCCAGTGA 11953
Score = 100 bits (110), Expect = 7e-16
Identities = 142/200 (71%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || || || ||||| |||||||| || | ||||||||| |||| || | || ||
Sbjct 12459 AGAACGAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCTGCCAGGGTACGACCGTCC 12400
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| || ||||| || || ||||||||||| || || ||||| |||
Sbjct 12399 TCCAGCTGCTTGCCTGCGAAAATCAGGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCC 12340
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|||||||| ||| || || | ||||| | | || || || | ||||| |||
Sbjct 12339 TGAATCTTGGACTTGACATTGTCAATAGTGTCCGAGGACTCGACTTCTAGGGTGATGGTC 12280
Query 199598 TTACCCGTGAGAGTTTTCAC 199617
|| || ||||| || || ||
Sbjct 12279 TTTCCGGTGAGGGTCTTGAC 12260
>seq169
Length=45351
Score = 125 bits (138), Expect = 2e-23
Identities = 150/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| |||||||| || |||||||| |||| ||||||||| |||| || | |||||
Sbjct 32231 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCATCC 32290
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| || || ||||| || |||||||||||||| || || || |||
Sbjct 32291 TCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCC 32350
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| ||| |||| ||||| | | || || |||| || || |||
Sbjct 32351 TGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTC 32410
Query 199598 TTACCCGTGAGAGTTTTCACAAAA 199621
|||||||| || || || || |||
Sbjct 32411 TTACCCGTCAGGGTCTTGACGAAA 32434
>seq59
Length=73848
Score = 113 bits (124), Expect = 1e-19
Identities = 137/187 (73%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499
|||| |||| |||||||| |||| || | ||||| ||||||||||| || || ||||
Sbjct 15444 CCTTCTGGATATTGTAGTCCGCCAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCAAAGA 15503
Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559
| || ||||||||||||||| ||| || || ||||| ||||| ||| || |
Sbjct 15504 TCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 15563
Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619
||| |||||| | | || || || | || |||||||||||||| || || || || |
Sbjct 15564 CGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTTAGGGTCTTGACGA 15623
Query 199620 AAATTTG 199626
|||| ||
Sbjct 15624 AAATCTG 15630
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178902613099219
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |