Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq85 232 7e-56 seq30 102 8e-17 seq169 100 3e-16 >seq85 Length=66049 Score = 232 bits (256), Expect = 7e-56 Identities = 599/901 (66%), Gaps = 19/901 (2%) Strand=Plus/Minus Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAG-GAAATGAG 132662 ||||| || ||| | || ||||| || || || || || || ||||| || ||| Sbjct 3504 TTTTGGTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCA-CCAAGCGAGATGTT 3446 Query 132663 CGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGG---TGCCGATCAGGTCGAC 132719 | |||||| || ||||||||| | |||||| |||| |||||| || | | Sbjct 3445 CTCCATAAAGTCAAAGGGGTTGCTGGCCTTGTAGACCTTGTCGTTGCCGA---GGGCCAT 3389 Query 132720 GAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAG 132779 || || | |||||| || || || ||||| | |||| ||| || | || || Sbjct 3388 CAGGAGACGGTCGGCGACAAATTCAATGTAGGTCTTCATGAGGTCGGCGTTCATGCCAAG 3329 Query 132780 CAGACGCACCGG-CAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGACCGCGTCGGTG 132837 ||| |||| || ||| || || || | ||| | || ||| || || || || |||||| Sbjct 3328 CAGG-GCACAGGGCAGGGCCTCAGTCAAGAACTCCTT-CTCAATAGCAACAGCATCGGTG 3271 Query 132838 ACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAA 132897 | ||| ||| || | | ||| || || | | || | | | || |||| Sbjct 3270 ATGATGTCCTCAATCAGTTGCTTGCTGGGGCGGTTGTTAAGGTGGGAGTAGAGCAGGCAA 3211 Query 132898 GCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCG 132957 |||||||| || | |||||| || | ||| || || |||||| ||| |||| || Sbjct 3210 GCAAAGTCAGTGTGAAGGCCCTCATCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCA 3151 Query 132958 GGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACG 133017 |||||||| || || || ||||| || |||| ||| ||| ||||| ||||||| Sbjct 3150 GGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCAAAAGCACCCGAGAAGAAGATA 3091 Query 133018 CCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATC 133077 |||||||| || || || || || || |||| | | || || | || ||| ||||||| Sbjct 3090 CCCTCGACAGCGGCAAAGGCAACGAGACGCTGGGCAAAGGTAGACTCCTTGTCGGCGATC 3031 Query 133078 CAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAAC 133137 || ||| ||||| || ||||| | ||| || || || || |||||||| ||| Sbjct 3030 CACTTCAGGGCCCAGTCAGCCTTGCGGCGAATGCAGGGAATAGTATCAATGGCGTTGAAC 2971 Query 133138 AAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTT 133195 | | || | || || | | |||||| || ||||| ||| || | | Sbjct 2970 AG--GTAGGAACGCTGGGCGGGCTCCTTGATGTAGGTATCAATGAGCAGCGAGTAGGTCT 2913 Query 133196 CCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCT 133255 | ||||| | ||| ||||| ||| || || || |||||||| || |||||| | || Sbjct 2912 CGGAGTGAATGTTTTCCATCATGATCTGGAAACCATAAAAGCAGCGGGCCTCGGGAATCT 2853 Query 133256 GCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGA 133315 | || || | ||||||||| |||| || ||||||||||| ||||| |||||| | Sbjct 2852 GGACCTCGGCGGAGAAACGCTCAACCAAGTTCTCGTTGACGATACCGTCAGAGGCGGCAA 2793 Query 133316 AAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGT 133372 | || ||||| | ||| ||| || |||||| | ||||| ||| | ||||| Sbjct 2792 AGAAAGCCAGGATGTGGGAGATAAAGAACTGCTCGTCTTTGTTCATGCGGTTGTTCCAGT 2733 Query 133373 CGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTT 133432 || | ||||||||||| || | ||||||| ||||||| || || |||||||| || | Sbjct 2732 CGTGGAGATCCTTGGACAGATCAATCTCCTCGGCGGTCCAGAAAGAAGCCTCGGCCTTCT 2673 Query 133433 TGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTT 133492 ||||||| ||| || || || | ||||| || | ||| || ||| ||||| | Sbjct 2672 TGTACATTTGCCAGATCTCGTGGTACTTGATGGGGAAGAGCACGAAGCGGTTAGGGTTCT 2613 Query 133493 C 133493 | Sbjct 2612 C 2612 >seq30 Length=92847 Score = 102 bits (112), Expect = 8e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || || ||||| || || ||||||||| | || |||||| || | |||| | Sbjct 12258 TCGTCAAGACCCTCACCGGAAAGACCATCACCCTAGAAGTCGAGTCCTCGGACACTATTG 12317 Query 38314 AAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCA 38373 | | | || || || | ||||| || || || ||| | ||||| ||||| || | Sbjct 12318 ACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGCATCCCCCCTGACCAGCAGCGCCTGA 12377 Query 38374 TTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433 ||| ||| ||||| |||||||| |||| || ||||| ||||||||||| || |||| Sbjct 12378 TTTTCGCAGGCAAGCAGCTGGAGGACGGTCGTACCCTGGCAGACTACAACATTCAGAAGG 12437 Query 38434 AAGCGACGCTGCATTTGGTGCTGCGT 38459 | | || |||||| | || || ||| Sbjct 12438 AGTCTACTCTGCATCTCGTTCTTCGT 12463 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || || ||||| ||||| ||| | || || ||| || | Sbjct 12476 ATGCAAATCTTTGTCAAGACTCTGACTGGCAAGACCATTACCCTGGAGGTTGAGACCTCG 12535 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || || || | ||||| ||||| || ||| | || || Sbjct 12536 GACACTATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCGGATCAG 12595 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||||| || || || ||||| || |||| || ||||| ||||||||| Sbjct 12596 CAGCGTCTCATTTTTGCTGGAAAGCAGCTTGAAGACGGTCGTACCCTGGCAGACTACAAC 12655 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 ||||| ||||| | || |||||| |||| || ||| | | || |||| Sbjct 12656 ATCCAGAAGGAGTCTACTCTGCATCTGGTTCTTCGTCTTCGTGGTGGCC 12704 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324 |||| ||||| ||||||||| |||| || || | | |||| | | | |||| | ||| Sbjct 11953 TCACTGGCAAGACCATCACCCTCGAGGTTGAATCGTCAGACACCATCGACAACG-TCAAA 12011 Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384 || || | || || ||||| || ||| | || || ||||| ||||||| || || Sbjct 12012 TCCAAGATTCAAGATAAGGAGGGTATCCCCCCGGATCAGCAGCGTCTCATTTTTGCTGGA 12071 Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444 || ||||| || |||| |||||||| ||||||||||| || ||||| | || || Sbjct 12072 AAGCAGCTTGAAGACGGTCGCACCCTTGCGGACTACAACATTCAGAAGGAGTCCACCCTT 12131 Query 38445 CATTTGGTGCTGCG 38458 || |||| || || Sbjct 12132 CACCTGGTCCTCCG 12145 >seq169 Length=45351 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || ||||| || ||||| ||| | || |||||| || | |||| | Sbjct 32433 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCCTCGGACACGATC 32374 Query 38313 CA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371 | |||| | || || |||| ||||| ||||| || ||| | ||||| ||||| || Sbjct 32373 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGCCT 32315 Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431 || | || ||||| ||||| || || | |||||||| |||||||||||||| || Sbjct 32314 GATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCGGACTACAACATCCAGAA 32255 Query 38432 GGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| | || || || |||| || ||| || | || || Sbjct 32254 GGAGTCCACCCTCCACCTGGTCCTCCGTCTGCGTGGTGG 32216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500164941034880