Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq465 196 6e-45 seq38 192 7e-44 >seq465 Length=19366 Score = 196 bits (216), Expect = 6e-45 Identities = 498/748 (67%), Gaps = 35/748 (5%) Strand=Plus/Plus Query 7026 CGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTT 7085 |||| || || | || ||||| ||||| |||||||||||||| || | || | ||| | Sbjct 8873 CGGCCTGAACGGCGGCACCGTAGGCGACGGCCTCATCGGGGTTGATGGACTTCTCCAGCT 8932 Query 7086 CTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCAC 7145 || ||||| || | || || | | | || || || ||||| || || || |||| Sbjct 8933 TCTTGCCGTTGAAGAACTCGGACAGGAGCTTCTGGATCTTGGGGATACGGGTGGAACCAC 8992 Query 7146 CGACCAAAACGATTTCATTCACTTTCGATTTATCGA--------TCTTTGAGTCTCGAAG 7197 |||||| ||||| |||| || | | || |||| || ||||| ||| | Sbjct 8993 CGACCAGGACGATCTCATCGACCTGCTTCTTCTCGAGGCCAGAGTCCTTGAGGACCGAGG 9052 Query 7198 TGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACA---CAGTTCCTCAAA 7254 | || || |||| | | | | | ||| || | | ||| ||||| || Sbjct 9053 --------CAACGGGCTCCAGAG--TGCCAGCA-AAGGCCTTGGAGTTCAGCTCCTCGAA 9101 Query 7255 ACGTGCACGGGTAAT--GGATG-TATAGAAATCAACGCCGTCGTATAACGAATCAATTTC 7311 ||| ||||| || || ||| | | ||| ||| || || | | || ||||| || Sbjct 9102 ACGGGCACGAGTGATCTGGACGGTGTAGTCTTCA---CCATCAAAGAGAGAGTCAATCTC 9158 Query 7312 AATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAA 7371 |||||| || || || ||||| | || ||||| || ||||| || || || || | Sbjct 9159 AATGGTAGTCTGAGCACCGGAAGACAGAGTACGCTTGGCACGCTCGCAAGCAGTACGGAG 9218 Query 7372 ACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTC 7431 ||| || |||||||| | | |||||| | || ||||| || || | || || | Sbjct 9219 ACGGCGCAGGGCACGGGCATCACCGGACAGGTCCTTCTTGGACTTGCGAGTGAAGTCCTT 9278 Query 7432 AGAGAAGT-GTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCG 7490 | ||| ||| | | || | | ||||||||| | |||||||| ||| ||||| || | Sbjct 9279 CTTGCAGTAGTCCA-GCAGGTTGGTATCGAAATCCTGACCACCCAGGTGAGTATCACCAG 9337 Query 7491 CGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTAC 7550 |||| || ||||| |||| ||| || | ||||| | || || ||||| || |||| Sbjct 9338 CGGTAGCCTTGACAGTGAAGACACCACCCTGGATGTTCAGCAGGGAGACATCGAAAGTAC 9397 Query 7551 CACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCT---TTGTTCTTATCGAGAC 7607 |||||||||| || | || || ||||| || | ||| ||| | | |||| Sbjct 9398 CACCACCCAGATCGTAGATCAGGACGTTGCGCTCCTTGTCGGACTTGCCGGCACCCAGAC 9457 Query 7608 CGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACAGTTCAGGCCAGCA 7666 |||| |||||||| || || || || || || || ||||| || ||| |||||||||||| Sbjct 9458 CGTAGGCGATAGCGGCAGCGGTGGGCTCGTTGATGATACGGAGGACA-TTCAGGCCAGCA 9516 Query 7667 ATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTT 7726 |||| | || || || || || || || || ||||| |||||||| || || || Sbjct 9517 ATAGCACCAGCGTCCTTGGTAGCCTGACGCTGGTTGTCGTTGAAGTAGGCGGGAACGGTG 9576 Query 7727 ACGACCGCGTCCGTGACTTTCTTACCGA 7754 | ||| || | | ||| |||||||||| Sbjct 9577 ATGACAGCCTTCTCGACCTTCTTACCGA 9604 Score = 93.3 bits (102), Expect = 5e-14 Identities = 112/152 (74%), Gaps = 3/152 (2%) Strand=Plus/Plus Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 ||||| |||||||| |||| || || ||||| ||||||||||||| | |||||||| Sbjct 9890 CCGATCAGACGCTTGACATCGAAGACGGTGTTGGTGGGGTTCATGGCCGCCTGGTTCTTG 9949 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || || || ||||| ||||| || ||| || || || | ||| |||| ||||| || Sbjct 9950 GCAGCCTCACCGATCAGACGCTCCTTA---TCGGTGAAGGAAACGAACGAAGGGGTGGTG 10006 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTAC 8088 || || || ||||| || ||||| || || Sbjct 10007 AAGTTACCCTGCTCGTTGGCGATAATCTCGAC 10038 >seq38 Length=86511 Score = 192 bits (212), Expect = 7e-44 Identities = 276/389 (71%), Gaps = 0/389 (0%) Strand=Plus/Plus Query 7463 TCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCA 7522 ||||||||||||| ||| || || || || |||| ||||| ||||||||||| | ||| Sbjct 70051 TCTTCACCACCCAGGTGAGTGTCACCAGCAGTCGACTTGACCTCAAAGATACCATCCTCA 70110 Query 7523 ATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTA 7582 || | | | |||||||||||| |||||||||||||| || || || || ||||| Sbjct 70111 ATCGTCAGGAGCGAAACATCAAAAGTACCACCACCCAGATCGAAGATCAGGACGTTGCGC 70170 Query 7583 TCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATA 7642 || | || ||||| || |||||||| ||||| || || || || || || || || Sbjct 70171 TCACCCTCAACCTTCTTGTCAAGACCGTAGGCGATGGCAGCAGCAGTGGGCTCGTTGATG 70230 Query 7643 ATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAA 7702 ||||| || ||| || || |||||| | | || || || || || || || || Sbjct 70231 ATACGGAGGACGTTGAGACCGGCAATAAGACCGGAGTCCTTAGTGGCCTGACGCTGGGAG 70290 Query 7703 TCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGAT 7762 ||||| |||||||| ||||| || | ||| |||| |||| ||||||| || || Sbjct 70291 TCGTTGAAGTAGGCGGGGACAGTGATGACGGCGTTGTTGACCGAGGTACCGAGGTAAGAC 70350 Query 7763 TCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT 7822 || ||| | || ||| ||| | || ||||| || |||||||| || | | ||||| Sbjct 70351 TCAGCGGTCTCACGCATCTTGATCAGGACCATGGAGGAAATCTCCTCGGGGGTGAACTGC 70410 Query 7823 TTCGTTTCACCGTTAAAATCAACTTCAAT 7851 || || || || || || ||||| || || Sbjct 70411 TTGGTCTCGCCCTTGAACTCAACCTCGAT 70439 Score = 143 bits (158), Expect = 3e-29 Identities = 553/866 (64%), Gaps = 7/866 (1%) Strand=Plus/Plus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||| || || || ||||| || || || | ||| || || || || || || Sbjct 69002 TTCATCCTCCTCCTTGTACTTCTCGGCCTCGGAAAGCATGCGCTCGATATCCTCCTTGGA 69061 Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687 | | ||||| || || ||||| |||||| | ||| || || | |||| || Sbjct 69062 CAGGCGACCCTTGTCGTTGGTAATGACAATCTTGTTGGACTTGCCAGTACCCTTCTCAAG 69121 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 |||| || |||| ||||| || ||||| | || || | || | ||| || || Sbjct 69122 AGCAGAGACGTTCATGATACCGTTGGCATCCAGGTCAAAGGTGACCTCAATCTGAGGAAC 69181 Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807 ||| | || || | |||||||| || | ||||| |||| || | |||| ||| | Sbjct 69182 ACCACGGGGGGCAGGAGGAATACCAGTAAGCTCAAACTTACCCAGCAGGTTGTTGTCCTT 69241 Query 6808 CGCCTTCTTACGTTCACCTTCATAGACTTTAATT--GTCACCGCAGGTTGATTATCTTGT 6865 | || || ||||| ||||| || | ||| | ||||| || || || || Sbjct 69242 GGTGCGCTGGCGCTCACCCTCATATACCTGAATCAGGACACCG--GGCTGGTTGTCAGAG 69299 Query 6866 GCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGG 6925 || ||||||| | ||||| | || || || || || | ||||| | | | Sbjct 69300 AAGGTGGAGAAGACCTCCGACTTCTTGGTGGGGATGGTGGTGTTGCGGGGAATGAGCTTG 69359 Query 6926 GTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAAC 6985 ||||| |||||||| ||| |||| || || ||||| || | || |||| || | Sbjct 69360 GTCATCATACCACCAGCAGTCTCGATACCGAGGGACAGGGGAGCGACATCCAGCAGCAGG 69419 Query 6986 AGGTCTTGAACAGATTCGTTCCCT---TCACCCGTTAAGATGGCGGCTTGGACCGTCGCC 7042 | || | | | ||| ||||| | | ||| || || ||||| | || Sbjct 69420 ATCTCGTTGGTGGTCTTGTTGGAGGTGTCACCAGACAGGATAGCAGCCTGGACGGCAGCA 69479 Query 7043 CCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAA 7102 ||||| || || |||||||||||||| || | || || | || |||||||| || || Sbjct 69480 CCGTAGGCAACGGCCTCATCGGGGTTGATGGACTTGTTGGGCTCCTTACCGTTGAAGTAG 69539 Query 7103 TCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCA 7162 || || | | | || || || || || || || ||||| |||| || || || Sbjct 69540 TCTGAGATAAGCTTCTGGATGCGGGGAATACGGGTGGAACCACCAACCAGGACAATCTCG 69599 Query 7163 TTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACAT 7222 | || || || || ||||| | || | || ||||| || | | | Sbjct 69600 TGGACGAGGGACTTGTCAATCTTGGCATCCTGGAGGACACGGTCGACGGGCTGGAGAGTA 69659 Query 7223 TTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAA 7282 ||||| | |||| ||||| ||||| ||||| ||||||||||| || || ||||| Sbjct 69660 GAGCGGAAAAGGTCCTGGCACAGCTCCTCGAAACGGGCACGGGTAATAGAGGTGTAGAAG 69719 Query 7283 TCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTT 7342 |||| || ||| | | || ||||| ||||| | || || || | ||| || | || Sbjct 69720 TCAATACCCTCGAACAGAGAGTCAATCTCAATCGAGGTCTGGGCAGACGACGACAGGGTG 69779 Query 7343 CGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATA 7402 ||||| || ||||| || || || || | |||||| || ||||| | ||| ||| | Sbjct 69780 CGCTTGGCACGCTCGCAAGCAGTGCGAAGACGACGCAGAGCACGAGCGTTGGAGGATAGG 69839 Query 7403 TCTTTCTTATGTTTACGTTTAAACTC 7428 || ||||| || || || || ||||| Sbjct 69840 TCCTTCTTGTGCTTGCGCTTGAACTC 69865 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 7898 TTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCA 7957 |||||||| | || |||| || || ||||| | || || |||||||| |||||| Sbjct 70555 TTCATATCAGCCTGAACCTCGGAATCAGAGAACTTGCGACCAATCAGACGCTTGGCATCA 70614 Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017 || || ||||| |||||||||||||| |||||||| || || || ||||| |||||| Sbjct 70615 AAGACGGTGTTCTTGGGGTTCATGGCGACCTGGTTCTTGGCGGCATCACCGATGAGACGT 70674 Query 8018 TCA 8020 ||| Sbjct 70675 TCA 70677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635122820475880