Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq465 196 6e-45
seq38 192 7e-44
>seq465
Length=19366
Score = 196 bits (216), Expect = 6e-45
Identities = 498/748 (67%), Gaps = 35/748 (5%)
Strand=Plus/Plus
Query 7026 CGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTT 7085
|||| || || | || ||||| ||||| |||||||||||||| || | || | ||| |
Sbjct 8873 CGGCCTGAACGGCGGCACCGTAGGCGACGGCCTCATCGGGGTTGATGGACTTCTCCAGCT 8932
Query 7086 CTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCAC 7145
|| ||||| || | || || | | | || || || ||||| || || || ||||
Sbjct 8933 TCTTGCCGTTGAAGAACTCGGACAGGAGCTTCTGGATCTTGGGGATACGGGTGGAACCAC 8992
Query 7146 CGACCAAAACGATTTCATTCACTTTCGATTTATCGA--------TCTTTGAGTCTCGAAG 7197
|||||| ||||| |||| || | | || |||| || ||||| ||| |
Sbjct 8993 CGACCAGGACGATCTCATCGACCTGCTTCTTCTCGAGGCCAGAGTCCTTGAGGACCGAGG 9052
Query 7198 TGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACA---CAGTTCCTCAAA 7254
| || || |||| | | | | | ||| || | | ||| ||||| ||
Sbjct 9053 --------CAACGGGCTCCAGAG--TGCCAGCA-AAGGCCTTGGAGTTCAGCTCCTCGAA 9101
Query 7255 ACGTGCACGGGTAAT--GGATG-TATAGAAATCAACGCCGTCGTATAACGAATCAATTTC 7311
||| ||||| || || ||| | | ||| ||| || || | | || ||||| ||
Sbjct 9102 ACGGGCACGAGTGATCTGGACGGTGTAGTCTTCA---CCATCAAAGAGAGAGTCAATCTC 9158
Query 7312 AATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAA 7371
|||||| || || || ||||| | || ||||| || ||||| || || || || |
Sbjct 9159 AATGGTAGTCTGAGCACCGGAAGACAGAGTACGCTTGGCACGCTCGCAAGCAGTACGGAG 9218
Query 7372 ACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTC 7431
||| || |||||||| | | |||||| | || ||||| || || | || || |
Sbjct 9219 ACGGCGCAGGGCACGGGCATCACCGGACAGGTCCTTCTTGGACTTGCGAGTGAAGTCCTT 9278
Query 7432 AGAGAAGT-GTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCG 7490
| ||| ||| | | || | | ||||||||| | |||||||| ||| ||||| || |
Sbjct 9279 CTTGCAGTAGTCCA-GCAGGTTGGTATCGAAATCCTGACCACCCAGGTGAGTATCACCAG 9337
Query 7491 CGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTAC 7550
|||| || ||||| |||| ||| || | ||||| | || || ||||| || ||||
Sbjct 9338 CGGTAGCCTTGACAGTGAAGACACCACCCTGGATGTTCAGCAGGGAGACATCGAAAGTAC 9397
Query 7551 CACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCT---TTGTTCTTATCGAGAC 7607
|||||||||| || | || || ||||| || | ||| ||| | | ||||
Sbjct 9398 CACCACCCAGATCGTAGATCAGGACGTTGCGCTCCTTGTCGGACTTGCCGGCACCCAGAC 9457
Query 7608 CGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACAGTTCAGGCCAGCA 7666
|||| |||||||| || || || || || || || ||||| || ||| ||||||||||||
Sbjct 9458 CGTAGGCGATAGCGGCAGCGGTGGGCTCGTTGATGATACGGAGGACA-TTCAGGCCAGCA 9516
Query 7667 ATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTT 7726
|||| | || || || || || || || || ||||| |||||||| || || ||
Sbjct 9517 ATAGCACCAGCGTCCTTGGTAGCCTGACGCTGGTTGTCGTTGAAGTAGGCGGGAACGGTG 9576
Query 7727 ACGACCGCGTCCGTGACTTTCTTACCGA 7754
| ||| || | | ||| ||||||||||
Sbjct 9577 ATGACAGCCTTCTCGACCTTCTTACCGA 9604
Score = 93.3 bits (102), Expect = 5e-14
Identities = 112/152 (74%), Gaps = 3/152 (2%)
Strand=Plus/Plus
Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996
||||| |||||||| |||| || || ||||| ||||||||||||| | ||||||||
Sbjct 9890 CCGATCAGACGCTTGACATCGAAGACGGTGTTGGTGGGGTTCATGGCCGCCTGGTTCTTG 9949
Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056
|| || || ||||| ||||| || ||| || || || | ||| |||| ||||| ||
Sbjct 9950 GCAGCCTCACCGATCAGACGCTCCTTA---TCGGTGAAGGAAACGAACGAAGGGGTGGTG 10006
Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTAC 8088
|| || || ||||| || ||||| || ||
Sbjct 10007 AAGTTACCCTGCTCGTTGGCGATAATCTCGAC 10038
>seq38
Length=86511
Score = 192 bits (212), Expect = 7e-44
Identities = 276/389 (71%), Gaps = 0/389 (0%)
Strand=Plus/Plus
Query 7463 TCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCA 7522
||||||||||||| ||| || || || || |||| ||||| ||||||||||| | |||
Sbjct 70051 TCTTCACCACCCAGGTGAGTGTCACCAGCAGTCGACTTGACCTCAAAGATACCATCCTCA 70110
Query 7523 ATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTA 7582
|| | | | |||||||||||| |||||||||||||| || || || || |||||
Sbjct 70111 ATCGTCAGGAGCGAAACATCAAAAGTACCACCACCCAGATCGAAGATCAGGACGTTGCGC 70170
Query 7583 TCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATA 7642
|| | || ||||| || |||||||| ||||| || || || || || || || ||
Sbjct 70171 TCACCCTCAACCTTCTTGTCAAGACCGTAGGCGATGGCAGCAGCAGTGGGCTCGTTGATG 70230
Query 7643 ATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAA 7702
||||| || ||| || || |||||| | | || || || || || || || ||
Sbjct 70231 ATACGGAGGACGTTGAGACCGGCAATAAGACCGGAGTCCTTAGTGGCCTGACGCTGGGAG 70290
Query 7703 TCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGAT 7762
||||| |||||||| ||||| || | ||| |||| |||| ||||||| || ||
Sbjct 70291 TCGTTGAAGTAGGCGGGGACAGTGATGACGGCGTTGTTGACCGAGGTACCGAGGTAAGAC 70350
Query 7763 TCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT 7822
|| ||| | || ||| ||| | || ||||| || |||||||| || | | |||||
Sbjct 70351 TCAGCGGTCTCACGCATCTTGATCAGGACCATGGAGGAAATCTCCTCGGGGGTGAACTGC 70410
Query 7823 TTCGTTTCACCGTTAAAATCAACTTCAAT 7851
|| || || || || || ||||| || ||
Sbjct 70411 TTGGTCTCGCCCTTGAACTCAACCTCGAT 70439
Score = 143 bits (158), Expect = 3e-29
Identities = 553/866 (64%), Gaps = 7/866 (1%)
Strand=Plus/Plus
Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627
|||||| || || || ||||| || || || | ||| || || || || || ||
Sbjct 69002 TTCATCCTCCTCCTTGTACTTCTCGGCCTCGGAAAGCATGCGCTCGATATCCTCCTTGGA 69061
Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687
| | ||||| || || ||||| |||||| | ||| || || | |||| ||
Sbjct 69062 CAGGCGACCCTTGTCGTTGGTAATGACAATCTTGTTGGACTTGCCAGTACCCTTCTCAAG 69121
Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747
|||| || |||| ||||| || ||||| | || || | || | ||| || ||
Sbjct 69122 AGCAGAGACGTTCATGATACCGTTGGCATCCAGGTCAAAGGTGACCTCAATCTGAGGAAC 69181
Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807
||| | || || | |||||||| || | ||||| |||| || | |||| ||| |
Sbjct 69182 ACCACGGGGGGCAGGAGGAATACCAGTAAGCTCAAACTTACCCAGCAGGTTGTTGTCCTT 69241
Query 6808 CGCCTTCTTACGTTCACCTTCATAGACTTTAATT--GTCACCGCAGGTTGATTATCTTGT 6865
| || || ||||| ||||| || | ||| | ||||| || || || ||
Sbjct 69242 GGTGCGCTGGCGCTCACCCTCATATACCTGAATCAGGACACCG--GGCTGGTTGTCAGAG 69299
Query 6866 GCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGG 6925
|| ||||||| | ||||| | || || || || || | ||||| | | |
Sbjct 69300 AAGGTGGAGAAGACCTCCGACTTCTTGGTGGGGATGGTGGTGTTGCGGGGAATGAGCTTG 69359
Query 6926 GTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAAC 6985
||||| |||||||| ||| |||| || || ||||| || | || |||| || |
Sbjct 69360 GTCATCATACCACCAGCAGTCTCGATACCGAGGGACAGGGGAGCGACATCCAGCAGCAGG 69419
Query 6986 AGGTCTTGAACAGATTCGTTCCCT---TCACCCGTTAAGATGGCGGCTTGGACCGTCGCC 7042
| || | | | ||| ||||| | | ||| || || ||||| | ||
Sbjct 69420 ATCTCGTTGGTGGTCTTGTTGGAGGTGTCACCAGACAGGATAGCAGCCTGGACGGCAGCA 69479
Query 7043 CCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAA 7102
||||| || || |||||||||||||| || | || || | || |||||||| || ||
Sbjct 69480 CCGTAGGCAACGGCCTCATCGGGGTTGATGGACTTGTTGGGCTCCTTACCGTTGAAGTAG 69539
Query 7103 TCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCA 7162
|| || | | | || || || || || || || ||||| |||| || || ||
Sbjct 69540 TCTGAGATAAGCTTCTGGATGCGGGGAATACGGGTGGAACCACCAACCAGGACAATCTCG 69599
Query 7163 TTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACAT 7222
| || || || || ||||| | || | || ||||| || | | |
Sbjct 69600 TGGACGAGGGACTTGTCAATCTTGGCATCCTGGAGGACACGGTCGACGGGCTGGAGAGTA 69659
Query 7223 TTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAA 7282
||||| | |||| ||||| ||||| ||||| ||||||||||| || || |||||
Sbjct 69660 GAGCGGAAAAGGTCCTGGCACAGCTCCTCGAAACGGGCACGGGTAATAGAGGTGTAGAAG 69719
Query 7283 TCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTT 7342
|||| || ||| | | || ||||| ||||| | || || || | ||| || | ||
Sbjct 69720 TCAATACCCTCGAACAGAGAGTCAATCTCAATCGAGGTCTGGGCAGACGACGACAGGGTG 69779
Query 7343 CGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATA 7402
||||| || ||||| || || || || | |||||| || ||||| | ||| ||| |
Sbjct 69780 CGCTTGGCACGCTCGCAAGCAGTGCGAAGACGACGCAGAGCACGAGCGTTGGAGGATAGG 69839
Query 7403 TCTTTCTTATGTTTACGTTTAAACTC 7428
|| ||||| || || || || |||||
Sbjct 69840 TCCTTCTTGTGCTTGCGCTTGAACTC 69865
Score = 91.5 bits (100), Expect = 2e-13
Identities = 94/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 7898 TTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCA 7957
|||||||| | || |||| || || ||||| | || || |||||||| ||||||
Sbjct 70555 TTCATATCAGCCTGAACCTCGGAATCAGAGAACTTGCGACCAATCAGACGCTTGGCATCA 70614
Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017
|| || ||||| |||||||||||||| |||||||| || || || ||||| ||||||
Sbjct 70615 AAGACGGTGTTCTTGGGGTTCATGGCGACCTGGTTCTTGGCGGCATCACCGATGAGACGT 70674
Query 8018 TCA 8020
|||
Sbjct 70675 TCA 70677
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635122820475880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |