Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq85 116 5e-21
seq368 104 3e-17
>seq85
Length=66049
Score = 116 bits (128), Expect = 5e-21
Identities = 151/206 (73%), Gaps = 6/206 (3%)
Strand=Plus/Plus
Query 102129 AAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAA--AGTCGCGTTCCTTTGCTGAGCGA 102185
|| || || ||||| |||||||| | | |||| |||| | ||||||| ||||
Sbjct 3008 AAGGCTGACTGGGCCCTGAAGTGGATCGCCGACAAGGAGTC---TACCTTTGCCCAGCGT 3064
Query 102186 CTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTAT 102245
||| | || ||||| ||| ||||||||||||||||| ||| | || | | || |
Sbjct 3065 CTCGTTGCCTTTGCCGCTGTCGAGGGTATCTTCTTCTCGGGTGCTTTTGCCTCCATCTTC 3124
Query 102246 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 102305
||||| ||||| ||||||||||| ||||| ||||||||||||||| ||||| |||
Sbjct 3125 TGGCTGCGCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTGATCTCCCGT 3184
Query 102306 GACGAGGGACTCCACCAAGAGTTTGC 102331
|| ||||| || ||| || |||||
Sbjct 3185 GATGAGGGCCTTCACACTGACTTTGC 3210
>seq368
Length=24549
Score = 104 bits (114), Expect = 3e-17
Identities = 160/226 (71%), Gaps = 2/226 (1%)
Strand=Plus/Minus
Query 16065 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 16124
||||||||||||||||| |||| || || || ||||| || || |||| |
Sbjct 8685 GCATCAATCTCATCAATAAAGATAATACACGGCGCATTTTTCCGCGCTGTCGCAAACAAG 8626
Query 16125 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-ACA 16183
|| || |||||| | || ||||||||||||||||||||||| | | | || |||
Sbjct 8625 TCACGCACACGCGACGGCCCGACACCAACAAACATCTCCACAAACTCCGAACCAGAGACA 8566
Query 16184 TTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 16243
| || || || || || || ||||| |||| ||| || || ||||| |||||
Sbjct 8565 CT-GAAAAACGGAACTCCGGACTCGCCCGCCGTGGCCTTGGCCAGCAGCGTCTTTCCCGT 8507
Query 16244 ACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 16289
||| ||| |||| ||||| |||||| || || |||||||| |||
Sbjct 8506 ACCGGGCGGTCCCGAGAGGATGGCACCACGCGGGATCTTGGCACCA 8461
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620732646585040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |