Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq85 116 5e-21 seq368 104 3e-17 >seq85 Length=66049 Score = 116 bits (128), Expect = 5e-21 Identities = 151/206 (73%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 102129 AAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAA--AGTCGCGTTCCTTTGCTGAGCGA 102185 || || || ||||| |||||||| | | |||| |||| | ||||||| |||| Sbjct 3008 AAGGCTGACTGGGCCCTGAAGTGGATCGCCGACAAGGAGTC---TACCTTTGCCCAGCGT 3064 Query 102186 CTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTAT 102245 ||| | || ||||| ||| ||||||||||||||||| ||| | || | | || | Sbjct 3065 CTCGTTGCCTTTGCCGCTGTCGAGGGTATCTTCTTCTCGGGTGCTTTTGCCTCCATCTTC 3124 Query 102246 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 102305 ||||| ||||| ||||||||||| ||||| ||||||||||||||| ||||| ||| Sbjct 3125 TGGCTGCGCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTGATCTCCCGT 3184 Query 102306 GACGAGGGACTCCACCAAGAGTTTGC 102331 || ||||| || ||| || ||||| Sbjct 3185 GATGAGGGCCTTCACACTGACTTTGC 3210 >seq368 Length=24549 Score = 104 bits (114), Expect = 3e-17 Identities = 160/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 16065 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 16124 ||||||||||||||||| |||| || || || ||||| || || |||| | Sbjct 8685 GCATCAATCTCATCAATAAAGATAATACACGGCGCATTTTTCCGCGCTGTCGCAAACAAG 8626 Query 16125 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-ACA 16183 || || |||||| | || ||||||||||||||||||||||| | | | || ||| Sbjct 8625 TCACGCACACGCGACGGCCCGACACCAACAAACATCTCCACAAACTCCGAACCAGAGACA 8566 Query 16184 TTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 16243 | || || || || || || ||||| |||| ||| || || ||||| ||||| Sbjct 8565 CT-GAAAAACGGAACTCCGGACTCGCCCGCCGTGGCCTTGGCCAGCAGCGTCTTTCCCGT 8507 Query 16244 ACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 16289 ||| ||| |||| ||||| |||||| || || |||||||| ||| Sbjct 8506 ACCGGGCGGTCCCGAGAGGATGGCACCACGCGGGATCTTGGCACCA 8461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620732646585040