Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq54 221 1e-52
seq368 125 8e-24
seq85 120 4e-22
>seq54
Length=76171
Score = 221 bits (244), Expect = 1e-52
Identities = 1109/1745 (64%), Gaps = 49/1745 (3%)
Strand=Plus/Minus
Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGA---T 109556
||||| ||| || ||||| ||||| || |||||||||||| ||||| | || | |
Sbjct 19529 GTTCAGCGATTGCGACTGGTCGATAAAGGCACCACGATCAGCAGCCATCTGGACAACCGT 19470
Query 109557 ACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTC 109616
|| || | ||| ||||| ||||||||||||| | |||||| ||| | ||||||
Sbjct 19469 ACGCT---GAGAAATCTCCCATACAGTCTTGTACAGACCCTTGATGTCAGCAGGAATGCT 19413
Query 109617 CACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCA 109676
||||||||||| || ||| | | ||| | | |||||| | |||||
Sbjct 19412 GGGAATGTTTTGAATTGAACCATTGTCGGCAATGATGCGGTTCTTCATGGAATCAGACCA 19353
Query 109677 GAGACCGACCTTTTTGAGATCGT-CAACAAGATGCTTGTTGACCACGACAAATTCACCAG 109735
|| || | | || || ||||| | |||||| || || || ||||
Sbjct 19352 CAGGCCAAGGTCAACCAGGTCACGCAACAGCCAGGG-GTTGACGACCTGGAACTCGCCAG 19294
Query 109736 CAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTA 109795
| || || || |||| ||||| | |||||||| ||||| || || || ||||| |
Sbjct 19293 CTAGGACACGGCGCTGGTAAATGTTGGAGGTGTAGGGCTCGAAGCATTCGTTATTGCCCA 19234
Query 109796 GGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCT 109855
| || || | ||| || ||||||||||| || | || | | ||| |||| ||| |
Sbjct 19233 GAATCTGGGAAGTACTGGCGGTGGGCATGGGCGCAAGTAGTAAAGAGTTGCGGATACCGT 19174
Query 109856 TCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCAC 109915
| ||| | | | || || || | ||| || | | |||| ||| ||
Sbjct 19173 GCTGCTTGATCTGTTCCTTCAGTGAGGTCCAGTCCCAGAGGTCACTGGG---AGTGACA- 19118
Query 109916 CATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGT 109975
| |||||| || || || | |||| | |||| || |||| | | || ||
Sbjct 19117 --TTCCACATGTCAAACTGCAGGATGCCCTGGGACACAGGCGAGCCCTCGTAGGTCGAGT 19060
Query 109976 ACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCT 110035
|| ||||| || || | |||| | || ||||| || || || || || || ||||
Sbjct 19059 ACTTGCCCTCCTTCTGAGCAATCTCGCACGAGGCCTCAAGAGCAGCGTGGTAAATGGTCT 19000
Query 110036 CAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGA- 110094
| || ||||||| || | |||| | ||| | | || ||||| | | || ||
Sbjct 18999 CGAAGATATGAGTGTTGAGCTGGCGGGCCTCAGCCGACTCAAAGGGCATGCG-CAGAGCC 18941
Query 110095 ATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAG 110154
| || | || || |||||||||||||||| ||| ||||| || || |||||| |
Sbjct 18940 AGGAAGGCGTCGGCAAGACCCTGAACACCGACACCGATGGGACGGTGACGCATGTT---G 18884
Query 110155 CGTCGAGCAGTTTCT---ACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTC 110211
| | | ||| || ||||| |||| ||||||| || || || ||
Sbjct 18883 CTGTTATATGCTTCAGTAACAGGGTAGTGGTTGACATCGATGATGCGGTTCAGGTTGCGA 18824
Query 110212 GTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTG 110271
||| ||| |||| || || || || | | ||||| ||| || || || |
Sbjct 18823 ACAACAACCTTGGTGACCTCGTGCAGCTTATGGAAATCGTACGAGTT-GTTGGTGTAGTC 18765
Query 110272 ACATATTTG--GGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGG 110329
| ||| | ||||| || | ||| ||||| ||||| |||| | ||| || |
Sbjct 18764 A-ATAAAGGCAGGGAGGGCCAAAGAAGCAAGGTTGCAGACAGCAACCTCATCAGGAGCAC 18706
Query 110330 TGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGAT 110389
|||||| | ||| || || |||| |||||| || || ||||| ||||||||| |
Sbjct 18705 AGTATTCAATAATCTCAGTGCACAGGTTGGAGCTGCGGATAGTACCCAGGTTCTTCTGGT 18646
Query 110390 TCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTG 110449
| ||| |||||| ||||| || |||||| | ||| ||||||| || ||||| |
Sbjct 18645 TACTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAACGGGTTACCAGTCTCAGTCTGAG 18586
Query 110450 ACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCT 110509
| || || || | ||| | | ||| || ||| | | |||| ||||
Sbjct 18585 CTTCCAGGATAGCATACCACAGCTTTTGGGCTTTGAGAGTCAGTCGACCACGACCCTCCT 18526
Query 110510 CCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACA-TCAGAAAGACCCTTC 110568
|| ||||| |||||| |||| || || | ||||| ||| |||| |||||
Sbjct 18525 TTTCATACTTCTCGTACAATGCCTCGAACTCATCGCCGTA-ACAGTCAGCCAGACCAGGG 18467
Query 110569 GCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGG 110628
|| | ||| || | || | ||| | | || ||||| | ||||||||| ||
Sbjct 18466 CACTCATTGGGGCACATAAGAGTCCACTCGGCGTTCTTTTCAACACGCTTCATGAAAAGA 18407
Query 110629 TCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTG 110688
||||| ||||||| ||| |||||| |||||| ||| | ||||| | || || ||
Sbjct 18406 TCAGGGATCCACAGAGCCAGGAAAAGATCACGGGCACGGACTTCTTCTTTGCCGTGATTC 18347
Query 110689 AGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATG 110748
||| || || | || || | | ||||| |||||| || ||||| |||| ||| |
Sbjct 18346 TTGCGGAGATCGAGGAACTCAAAAACATCCGCGTGCCACGGCTCGAGGTAGATAGCAAAA 18287
Query 110749 GATCCCTTACGACGA------CCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACC 110802
| || | |||| || |||||| ||| || || || ||| ||||| ||
Sbjct 18286 GCACC---AGGACGCTTGTTGCCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACA 18230
Query 110803 CTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTG 110862
| |||||||||| || || | || ||| || || || ||| || | ||
Sbjct 18229 CGCAGCATAGGAACGATACCGTTCGAGGTACCGTTAGTGCCGGCAATGTAAGAACCAGTG 18170
Query 110863 GCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAAT--TTGTGCAC 110920
||||||||| ||| | | || ||||||||||||||| ||| || | | |||
Sbjct 18169 GCACGAATGCGGTGCACGTTCAGGCCAATACCACCCGCCATCTTGGAGATCATAGCGCAA 18110
Query 110921 ACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGC 110980
| | |||||| |||| ||||| ||||| || |||| | | | || ||||
Sbjct 18109 GTTTTCAGAGTGT--CATAGATACCCTCAATGCTGTCATCCTTCATATCCACGAGGAAGC 18052
Query 110981 AAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGA 111040
| ||||||| || | | || || || || ||||| || || || | |||||| |||
Sbjct 18051 ACGAAGACAGTTGCGCCTGGGGAGTACCGGCGTTGAAAAGAGTTGGGGATGCATGAGTGA 17992
Query 111041 ACAGACCTTGG--GACATCTTGTTGTATGTGTCGAGTGCGGAGGGT--ACATCTTTACCG 111096
| || |||| ||||| |||||| || || || | | | | ||||| | |||
Sbjct 17991 A--GAACTTGCTCGACATGAGGTTGTAGGTCTCCAGGAC--ACGTTCAACATCATCACCC 17936
Query 111097 TGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCA 111156
|| |||| ||||| ||||||| ||| | |||||| |||| | ||| || |||
Sbjct 17935 CAGATTCCAACAGCAACACGCATGATCATGTGTTGAGGACGCTCGACGATCTTGCCGTCA 17876
Query 111157 ACACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATCGAAATCA 111216
| | | ||||| ||| || ||||||| |||||||||| | | |||||||
Sbjct 17875 AGCTTCAGGAGGTATGAACGCTCAAGCGTCTTGAAACCAAAGTATTGGTAGTTGAAATCA 17816
Query 111217 CGATC 111221
|||||
Sbjct 17815 CGATC 17811
>seq368
Length=24549
Score = 125 bits (138), Expect = 8e-24
Identities = 316/473 (67%), Gaps = 28/473 (6%)
Strand=Plus/Minus
Query 11535 ATCAAGAATATCGACACGGTTTGTAGCGGCAATGACTACAATGCCAGTCTCATTGTCGAA 11594
||| || | ||| | ||||| ||| | || | ||| ||||| | || ||| |||
Sbjct 8839 ATCCAGGACATCCGCCCGGTTAGTACCAGCCAAGACAACAATCTGCTCCGCAGTGTTGAA 8780
Query 11595 ACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCAT 11654
||||||||| || || |||| ||| || | ||| || ||||| ||||||
Sbjct 8779 ACCGTCCATCTCGGTAAGAATCTGATTCAGCGTGGACTCCCGCTCGTCGTTGCC------ 8726
Query 11655 ACCACC--TGCCGAACGCTTC------TTACCGACA----GCGTCAATCTCATCGATGAA 11702
|||||| ||| | || || | |||||| || ||||||||||| || ||
Sbjct 8725 ACCACCCATGCGGTTCGAGTCCGTCCGTGACCGACCAATCGCATCAATCTCATCAATAAA 8666
Query 11703 TACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA-AGTTCACGTACACGCTTCGCTC 11761
| |||||||| || || || ||| ||| | ||||| |||||| || |
Sbjct 8665 GATAATACACGGCGCATTTTTCCGCGC-TGTCGCAAACAAGTCACGCACACGCGACGGCC 8607
Query 11762 CAACACCTACGAACATCTCAACGAAGTTTGCGGCAGA-ACACTGAATGAAGGGAACATTA 11820
| ||||| || |||||||| || || | | |||| |||||||| || |||||
Sbjct 8606 CGACACCAACAAACATCTCCACAAACTCCGAACCAGAGACACTGAAA-AACGGAACTCCG 8548
Query 11821 GACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGA 11880
||||| || || |||| || || || ||||| |||||||| || | || | |||
Sbjct 8547 GACTCGCCCGCCGTGGCCTTGGCCAGCAGCGTCTTTCCCGTACCGGGCGGTCCCGAGAGG 8488
Query 11881 AGGGCGCCACGGGGGATCTTGGCACC---ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGG 11937
| ||| ||||| |||||||||||||| || |||| | || ||||||||||||
Sbjct 8487 ATGGCACCACGCGGGATCTTGGCACCAAGACGGACAAACT---TTTCGGGCTTCTTGAGG 8431
Query 11938 AAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCGATACCCTCAACATC 11990
|| | ||||| |||| || ||| ||||||| ||| ||||| | |||||
Sbjct 8430 AATTGCACAAACTCCATAATCTCCACCTTGGCCTCGTCCATACCGGCCACATC 8378
>seq85
Length=66049
Score = 120 bits (132), Expect = 4e-22
Identities = 560/873 (64%), Gaps = 27/873 (3%)
Strand=Plus/Minus
Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267
||||| | || | ||| |||||||| || ||||| ||| | || |||||||| ||||||
Sbjct 3498 TAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGCGAGATGTTCTCCATA 3439
Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGAT-TGGTGGTTGACCAACTTGTTTCAGAAGACG 119326
|||||||| || || ||| || ||| | || |||| || | |||| |||||
Sbjct 3438 AAGTCAAAGGGGTTGCTGGCCTTGTAGACCTTGTCGTTG-CCGAGGGCCATCAGGAGACG 3380
Query 119327 ATCGGAGACATACTCGATATATTCGGACATCTTT---TCCGAATTCATACCTATGAGATT 119383
|||| |||| | || || || || | || | || | ||||| || | ||
Sbjct 3379 GTCGGCGACAAATTCAATGTA---GGTCTTCATGAGGTCGGCGTTCATGCCAAGCAGGGC 3323
Query 119384 ACACGGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGA 119443
||| || || || || | ||| | |||||| || | ||||| || | | ||||
Sbjct 3322 ACAGGGCAGGGCCTCAGTCAAGAACTCCTTCTCAATAGCAACAGCATCGGTGATGATGTC 3263
Query 119444 GTGAAT-AGTTTCTGTCGATGGTTTGTTTCTCAAGA---GTTTAAACAACTCTACGGCAA 119499
| ||| |||| || | ||| | || | ||| | || | | | | ||||
Sbjct 3262 CTCAATCAGTTGCTTGC--TGGGGCGGTTGTTAAGGTGGGAGTAGAGCAGGCAA--GCAA 3207
Query 119500 ATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCA 119559
| || ||||| || ||||| || ||||| ||||| || |||| || |||||||
Sbjct 3206 AGTCAGTGTGAAGGCCCTCATCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGCA 3147
Query 119560 TGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCT 119619
|||| || | || ||||| ||||||| |||| || || |||||||| ||||
Sbjct 3146 TGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCAAAAGCACCCGAGAAGAAGATACCCT 3087
Query 119620 CCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGA-GACTTGT---CGAACCAC 119675
| ||| ||| || || | ||||||| || |||||| || ||||| ||| ||||
Sbjct 3086 CGACAGCGGCAAAGGCAACGAGACGCTGGGC-AAAGGTAGACTCCTTGTCGGCGATCCAC 3028
Query 119676 TTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGT 119735
|| || ||||||| ||||| || |||||||| | ||| | ||||| | ||| ||
Sbjct 3027 TTCAGGGCCCAGTCAGCCTTGCGGCGAATGCAGGGAATAGTATCAATGGCGTTGAACAGG 2968
Query 119736 TGCTTCTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCACCA 119795
| | || ||||| || || |||||||||| |||||||||||
Sbjct 2967 TAGGAACGCTGGGCGGGCTCCTTGATGTAGGTATCAATGAGCAGCGAGTAGGTCTCGGAG 2908
Query 119796 TGAACCATTT-CATTGTGTGACTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTGCAC 119854
|||| ||| ||| || ||| | ||||||| |||| || |||| ||| || ||
Sbjct 2907 TGAATGTTTTCCATCATG-ATCTGGAAACCATAAAAGCAGCGGGCCTCGGGAATCTGGAC 2849
Query 119855 TTCGTCAGCAAAATTGTTGTTGATATTTTCAAAAACAATTCCATCGGATCCAGCGAAGAA 119914
||| | | ||| | | || || || || || || || | || |||||
Sbjct 2848 CTCGGCGGAGAAACGCTCAACCAAGTTCTCGTTGACGATACCGTCAGAGGCGGCAAAGAA 2789
Query 119915 TGCTAAGATGT---ACTTTATGAATTTCTGTTCATTATCGTTGAGTGTTTTCCAGTCGTC 119971
|| | ||||| | | | ||| | || || || | || | | ||||||||||
Sbjct 2788 AGCCAGGATGTGGGAGATAAAGAACTGCTCGTCTTTGTTCATGCGGTTGTTCCAGTCGTG 2729
Query 119972 CATATCTTTAGACAAGTCCACCTCTTCAGCTGTCCAGTTAGACATCTGTGCCTTTTTATA 120031
| ||| || |||| || | ||| || || |||||| ||| || ||||| || ||
Sbjct 2728 GAGATCCTTGGACAGATCAATCTCCTCGGCGGTCCAGAAAGAAGCCTCGGCCTTCTTGTA 2669
Query 120032 GAGTTCCCAAAGTTCAGGATACTTCA-GGGGAA 120063
| || ||| | || | ||||| | ||||||
Sbjct 2668 CATTTGCCAGATCTCGTGGTACTTGATGGGGAA 2636
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588966745714600
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