Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq54 221 1e-52 seq368 125 8e-24 seq85 120 4e-22 >seq54 Length=76171 Score = 221 bits (244), Expect = 1e-52 Identities = 1109/1745 (64%), Gaps = 49/1745 (3%) Strand=Plus/Minus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGA---T 109556 ||||| ||| || ||||| ||||| || |||||||||||| ||||| | || | | Sbjct 19529 GTTCAGCGATTGCGACTGGTCGATAAAGGCACCACGATCAGCAGCCATCTGGACAACCGT 19470 Query 109557 ACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTC 109616 || || | ||| ||||| ||||||||||||| | |||||| ||| | |||||| Sbjct 19469 ACGCT---GAGAAATCTCCCATACAGTCTTGTACAGACCCTTGATGTCAGCAGGAATGCT 19413 Query 109617 CACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCA 109676 ||||||||||| || ||| | | ||| | | |||||| | ||||| Sbjct 19412 GGGAATGTTTTGAATTGAACCATTGTCGGCAATGATGCGGTTCTTCATGGAATCAGACCA 19353 Query 109677 GAGACCGACCTTTTTGAGATCGT-CAACAAGATGCTTGTTGACCACGACAAATTCACCAG 109735 || || | | || || ||||| | |||||| || || || |||| Sbjct 19352 CAGGCCAAGGTCAACCAGGTCACGCAACAGCCAGGG-GTTGACGACCTGGAACTCGCCAG 19294 Query 109736 CAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTA 109795 | || || || |||| ||||| | |||||||| ||||| || || || ||||| | Sbjct 19293 CTAGGACACGGCGCTGGTAAATGTTGGAGGTGTAGGGCTCGAAGCATTCGTTATTGCCCA 19234 Query 109796 GGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCT 109855 | || || | ||| || ||||||||||| || | || | | ||| |||| ||| | Sbjct 19233 GAATCTGGGAAGTACTGGCGGTGGGCATGGGCGCAAGTAGTAAAGAGTTGCGGATACCGT 19174 Query 109856 TCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCAC 109915 | ||| | | | || || || | ||| || | | |||| ||| || Sbjct 19173 GCTGCTTGATCTGTTCCTTCAGTGAGGTCCAGTCCCAGAGGTCACTGGG---AGTGACA- 19118 Query 109916 CATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGT 109975 | |||||| || || || | |||| | |||| || |||| | | || || Sbjct 19117 --TTCCACATGTCAAACTGCAGGATGCCCTGGGACACAGGCGAGCCCTCGTAGGTCGAGT 19060 Query 109976 ACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCT 110035 || ||||| || || | |||| | || ||||| || || || || || || |||| Sbjct 19059 ACTTGCCCTCCTTCTGAGCAATCTCGCACGAGGCCTCAAGAGCAGCGTGGTAAATGGTCT 19000 Query 110036 CAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGA- 110094 | || ||||||| || | |||| | ||| | | || ||||| | | || || Sbjct 18999 CGAAGATATGAGTGTTGAGCTGGCGGGCCTCAGCCGACTCAAAGGGCATGCG-CAGAGCC 18941 Query 110095 ATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAG 110154 | || | || || |||||||||||||||| ||| ||||| || || |||||| | Sbjct 18940 AGGAAGGCGTCGGCAAGACCCTGAACACCGACACCGATGGGACGGTGACGCATGTT---G 18884 Query 110155 CGTCGAGCAGTTTCT---ACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTC 110211 | | | ||| || ||||| |||| ||||||| || || || || Sbjct 18883 CTGTTATATGCTTCAGTAACAGGGTAGTGGTTGACATCGATGATGCGGTTCAGGTTGCGA 18824 Query 110212 GTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTG 110271 ||| ||| |||| || || || || | | ||||| ||| || || || | Sbjct 18823 ACAACAACCTTGGTGACCTCGTGCAGCTTATGGAAATCGTACGAGTT-GTTGGTGTAGTC 18765 Query 110272 ACATATTTG--GGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGG 110329 | ||| | ||||| || | ||| ||||| ||||| |||| | ||| || | Sbjct 18764 A-ATAAAGGCAGGGAGGGCCAAAGAAGCAAGGTTGCAGACAGCAACCTCATCAGGAGCAC 18706 Query 110330 TGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGAT 110389 |||||| | ||| || || |||| |||||| || || ||||| ||||||||| | Sbjct 18705 AGTATTCAATAATCTCAGTGCACAGGTTGGAGCTGCGGATAGTACCCAGGTTCTTCTGGT 18646 Query 110390 TCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTG 110449 | ||| |||||| ||||| || |||||| | ||| ||||||| || ||||| | Sbjct 18645 TACTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAACGGGTTACCAGTCTCAGTCTGAG 18586 Query 110450 ACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCT 110509 | || || || | ||| | | ||| || ||| | | |||| |||| Sbjct 18585 CTTCCAGGATAGCATACCACAGCTTTTGGGCTTTGAGAGTCAGTCGACCACGACCCTCCT 18526 Query 110510 CCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACA-TCAGAAAGACCCTTC 110568 || ||||| |||||| |||| || || | ||||| ||| |||| ||||| Sbjct 18525 TTTCATACTTCTCGTACAATGCCTCGAACTCATCGCCGTA-ACAGTCAGCCAGACCAGGG 18467 Query 110569 GCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGG 110628 || | ||| || | || | ||| | | || ||||| | ||||||||| || Sbjct 18466 CACTCATTGGGGCACATAAGAGTCCACTCGGCGTTCTTTTCAACACGCTTCATGAAAAGA 18407 Query 110629 TCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTG 110688 ||||| ||||||| ||| |||||| |||||| ||| | ||||| | || || || Sbjct 18406 TCAGGGATCCACAGAGCCAGGAAAAGATCACGGGCACGGACTTCTTCTTTGCCGTGATTC 18347 Query 110689 AGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATG 110748 ||| || || | || || | | ||||| |||||| || ||||| |||| ||| | Sbjct 18346 TTGCGGAGATCGAGGAACTCAAAAACATCCGCGTGCCACGGCTCGAGGTAGATAGCAAAA 18287 Query 110749 GATCCCTTACGACGA------CCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACC 110802 | || | |||| || |||||| ||| || || || ||| ||||| || Sbjct 18286 GCACC---AGGACGCTTGTTGCCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACA 18230 Query 110803 CTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTG 110862 | |||||||||| || || | || ||| || || || ||| || | || Sbjct 18229 CGCAGCATAGGAACGATACCGTTCGAGGTACCGTTAGTGCCGGCAATGTAAGAACCAGTG 18170 Query 110863 GCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAAT--TTGTGCAC 110920 ||||||||| ||| | | || ||||||||||||||| ||| || | | ||| Sbjct 18169 GCACGAATGCGGTGCACGTTCAGGCCAATACCACCCGCCATCTTGGAGATCATAGCGCAA 18110 Query 110921 ACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGC 110980 | | |||||| |||| ||||| ||||| || |||| | | | || |||| Sbjct 18109 GTTTTCAGAGTGT--CATAGATACCCTCAATGCTGTCATCCTTCATATCCACGAGGAAGC 18052 Query 110981 AAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGA 111040 | ||||||| || | | || || || || ||||| || || || | |||||| ||| Sbjct 18051 ACGAAGACAGTTGCGCCTGGGGAGTACCGGCGTTGAAAAGAGTTGGGGATGCATGAGTGA 17992 Query 111041 ACAGACCTTGG--GACATCTTGTTGTATGTGTCGAGTGCGGAGGGT--ACATCTTTACCG 111096 | || |||| ||||| |||||| || || || | | | | ||||| | ||| Sbjct 17991 A--GAACTTGCTCGACATGAGGTTGTAGGTCTCCAGGAC--ACGTTCAACATCATCACCC 17936 Query 111097 TGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCA 111156 || |||| ||||| ||||||| ||| | |||||| |||| | ||| || ||| Sbjct 17935 CAGATTCCAACAGCAACACGCATGATCATGTGTTGAGGACGCTCGACGATCTTGCCGTCA 17876 Query 111157 ACACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATCGAAATCA 111216 | | | ||||| ||| || ||||||| |||||||||| | | ||||||| Sbjct 17875 AGCTTCAGGAGGTATGAACGCTCAAGCGTCTTGAAACCAAAGTATTGGTAGTTGAAATCA 17816 Query 111217 CGATC 111221 ||||| Sbjct 17815 CGATC 17811 >seq368 Length=24549 Score = 125 bits (138), Expect = 8e-24 Identities = 316/473 (67%), Gaps = 28/473 (6%) Strand=Plus/Minus Query 11535 ATCAAGAATATCGACACGGTTTGTAGCGGCAATGACTACAATGCCAGTCTCATTGTCGAA 11594 ||| || | ||| | ||||| ||| | || | ||| ||||| | || ||| ||| Sbjct 8839 ATCCAGGACATCCGCCCGGTTAGTACCAGCCAAGACAACAATCTGCTCCGCAGTGTTGAA 8780 Query 11595 ACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCAT 11654 ||||||||| || || |||| ||| || | ||| || ||||| |||||| Sbjct 8779 ACCGTCCATCTCGGTAAGAATCTGATTCAGCGTGGACTCCCGCTCGTCGTTGCC------ 8726 Query 11655 ACCACC--TGCCGAACGCTTC------TTACCGACA----GCGTCAATCTCATCGATGAA 11702 |||||| ||| | || || | |||||| || ||||||||||| || || Sbjct 8725 ACCACCCATGCGGTTCGAGTCCGTCCGTGACCGACCAATCGCATCAATCTCATCAATAAA 8666 Query 11703 TACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA-AGTTCACGTACACGCTTCGCTC 11761 | |||||||| || || || ||| ||| | ||||| |||||| || | Sbjct 8665 GATAATACACGGCGCATTTTTCCGCGC-TGTCGCAAACAAGTCACGCACACGCGACGGCC 8607 Query 11762 CAACACCTACGAACATCTCAACGAAGTTTGCGGCAGA-ACACTGAATGAAGGGAACATTA 11820 | ||||| || |||||||| || || | | |||| |||||||| || ||||| Sbjct 8606 CGACACCAACAAACATCTCCACAAACTCCGAACCAGAGACACTGAAA-AACGGAACTCCG 8548 Query 11821 GACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGA 11880 ||||| || || |||| || || || ||||| |||||||| || | || | ||| Sbjct 8547 GACTCGCCCGCCGTGGCCTTGGCCAGCAGCGTCTTTCCCGTACCGGGCGGTCCCGAGAGG 8488 Query 11881 AGGGCGCCACGGGGGATCTTGGCACC---ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGG 11937 | ||| ||||| |||||||||||||| || |||| | || |||||||||||| Sbjct 8487 ATGGCACCACGCGGGATCTTGGCACCAAGACGGACAAACT---TTTCGGGCTTCTTGAGG 8431 Query 11938 AAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCGATACCCTCAACATC 11990 || | ||||| |||| || ||| ||||||| ||| ||||| | ||||| Sbjct 8430 AATTGCACAAACTCCATAATCTCCACCTTGGCCTCGTCCATACCGGCCACATC 8378 >seq85 Length=66049 Score = 120 bits (132), Expect = 4e-22 Identities = 560/873 (64%), Gaps = 27/873 (3%) Strand=Plus/Minus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 ||||| | || | ||| |||||||| || ||||| ||| | || |||||||| |||||| Sbjct 3498 TAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGCGAGATGTTCTCCATA 3439 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGAT-TGGTGGTTGACCAACTTGTTTCAGAAGACG 119326 |||||||| || || ||| || ||| | || |||| || | |||| ||||| Sbjct 3438 AAGTCAAAGGGGTTGCTGGCCTTGTAGACCTTGTCGTTG-CCGAGGGCCATCAGGAGACG 3380 Query 119327 ATCGGAGACATACTCGATATATTCGGACATCTTT---TCCGAATTCATACCTATGAGATT 119383 |||| |||| | || || || || | || | || | ||||| || | || Sbjct 3379 GTCGGCGACAAATTCAATGTA---GGTCTTCATGAGGTCGGCGTTCATGCCAAGCAGGGC 3323 Query 119384 ACACGGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGA 119443 ||| || || || || | ||| | |||||| || | ||||| || | | |||| Sbjct 3322 ACAGGGCAGGGCCTCAGTCAAGAACTCCTTCTCAATAGCAACAGCATCGGTGATGATGTC 3263 Query 119444 GTGAAT-AGTTTCTGTCGATGGTTTGTTTCTCAAGA---GTTTAAACAACTCTACGGCAA 119499 | ||| |||| || | ||| | || | ||| | || | | | | |||| Sbjct 3262 CTCAATCAGTTGCTTGC--TGGGGCGGTTGTTAAGGTGGGAGTAGAGCAGGCAA--GCAA 3207 Query 119500 ATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCA 119559 | || ||||| || ||||| || ||||| ||||| || |||| || ||||||| Sbjct 3206 AGTCAGTGTGAAGGCCCTCATCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGCA 3147 Query 119560 TGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCT 119619 |||| || | || ||||| ||||||| |||| || || |||||||| |||| Sbjct 3146 TGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCAAAAGCACCCGAGAAGAAGATACCCT 3087 Query 119620 CCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGA-GACTTGT---CGAACCAC 119675 | ||| ||| || || | ||||||| || |||||| || ||||| ||| |||| Sbjct 3086 CGACAGCGGCAAAGGCAACGAGACGCTGGGC-AAAGGTAGACTCCTTGTCGGCGATCCAC 3028 Query 119676 TTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGT 119735 || || ||||||| ||||| || |||||||| | ||| | ||||| | ||| || Sbjct 3027 TTCAGGGCCCAGTCAGCCTTGCGGCGAATGCAGGGAATAGTATCAATGGCGTTGAACAGG 2968 Query 119736 TGCTTCTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCACCA 119795 | | || ||||| || || |||||||||| ||||||||||| Sbjct 2967 TAGGAACGCTGGGCGGGCTCCTTGATGTAGGTATCAATGAGCAGCGAGTAGGTCTCGGAG 2908 Query 119796 TGAACCATTT-CATTGTGTGACTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTGCAC 119854 |||| ||| ||| || ||| | ||||||| |||| || |||| ||| || || Sbjct 2907 TGAATGTTTTCCATCATG-ATCTGGAAACCATAAAAGCAGCGGGCCTCGGGAATCTGGAC 2849 Query 119855 TTCGTCAGCAAAATTGTTGTTGATATTTTCAAAAACAATTCCATCGGATCCAGCGAAGAA 119914 ||| | | ||| | | || || || || || || || | || ||||| Sbjct 2848 CTCGGCGGAGAAACGCTCAACCAAGTTCTCGTTGACGATACCGTCAGAGGCGGCAAAGAA 2789 Query 119915 TGCTAAGATGT---ACTTTATGAATTTCTGTTCATTATCGTTGAGTGTTTTCCAGTCGTC 119971 || | ||||| | | | ||| | || || || | || | | |||||||||| Sbjct 2788 AGCCAGGATGTGGGAGATAAAGAACTGCTCGTCTTTGTTCATGCGGTTGTTCCAGTCGTG 2729 Query 119972 CATATCTTTAGACAAGTCCACCTCTTCAGCTGTCCAGTTAGACATCTGTGCCTTTTTATA 120031 | ||| || |||| || | ||| || || |||||| ||| || ||||| || || Sbjct 2728 GAGATCCTTGGACAGATCAATCTCCTCGGCGGTCCAGAAAGAAGCCTCGGCCTTCTTGTA 2669 Query 120032 GAGTTCCCAAAGTTCAGGATACTTCA-GGGGAA 120063 | || ||| | || | ||||| | |||||| Sbjct 2668 CATTTGCCAGATCTCGTGGTACTTGATGGGGAA 2636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588966745714600