Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq54 143 3e-29
seq85 107 2e-18
seq368 105 8e-18
>seq54
Length=76171
Score = 143 bits (158), Expect = 3e-29
Identities = 600/934 (64%), Gaps = 25/934 (3%)
Strand=Plus/Minus
Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516
|| ||||| | || || | ||||| ||||| |||||| | | ||| || | |
Sbjct 18754 GGGAGGGCCAAAGAAGCAAGGTTGCAGACAGCAACCTCATCAGGAGCACAGTATTCAATA 18695
Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576
|| || || |||| |||||| || || || |||| ||||| ||||||||||| |
Sbjct 18694 ATCTCAGTGCACAGGTTGGAGCTGCGGATAGTACCCAGGTTCTTCTGGTTACTCTTGCGG 18635
Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636
||||| |||||||| |||||| | || | || ||||| ||||| | | || ||
Sbjct 18634 TTGCAGTGGTCCTTGTACAGCATGAACGGGTTACCAGTCTCAGTCTGAGCTTCCAGGATA 18575
Query 106637 GCCTTCCACACATCGGCGGCTGGTACAATGGCGTTGGCC-CGTCCCTCCGCCTCGTACTT 106695
|| | ||||| | |||| | | | || | || || |||||| || |||||
Sbjct 18574 GCATACCACAGCTTTTGGGCTTTGAGAGTCA-GTCGACCACGACCCTCCTTTTCATACTT 18516
Query 106696 TGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGG 106755
||| | || || ||||| || || ||| | ||||| || || | ||
Sbjct 18515 CTCGTACAATGCCTCGAACTCATCGCCGTAACAGTCAGCCAGACCAGGGCACTCATTGGG 18456
Query 106756 ACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCA 106815
|| | ||||| ||| | | || ||||| |||||||||||||| || || |||||
Sbjct 18455 GCACATAAGAGTCCACTCGGCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCA 18396
Query 106816 CAGGG--ATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA 106872
||| | | |||| ||||| | ||| || | ||||| | || || || || |
Sbjct 18395 CAGAGCCAGGAAA--AGATCACGGGCACGGA-CTTCTTCTTTGCCGTGATTCTTGCGGAG 18339
Query 106873 CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTT 106932
|| |||||||| | | |||||||||||| ||||| || |||| || | || ||
Sbjct 18338 ATCGAGGAACTCAAAAACATCCGCGTGCCACGGCTCGAGGTAGATAGCAAAAGCACC--- 18282
Query 106933 TCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCAT 106986
||||| ||| | || | || || || || ||| ||| || || || |||||
Sbjct 18281 AGGACGCTTGTTGCCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCAT 18222
Query 106987 TGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCAC 107046
|||| ||||| | || ||| || || || ||| ||| | |||| | |
Sbjct 18221 AGGAACGATACCGTTCGAGGTACCGTTAGTGCCGGCAATGTAAGAACCAGTGGCACGAAT 18162
Query 107047 ATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTA 107104
|| | || || |||||||| || ||| ||| ||||| | ||||| | | |
Sbjct 18161 GCGGTGCACGTTCAGGCCAATACCACCCGCCATCTTGGAGATCATAGCGCA-AGT-TTTC 18104
Query 107105 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 107164
||||| |||||||||| | || ||| ||||| | | | |||||||| |||
Sbjct 18103 AGAGTGTCATAGATACCCTCAATGCTGTCATCCTTCATATCCACGAGGAAGCACGAAGAC 18044
Query 107165 ATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT 107224
| |||| || ||||| || ||||| || ||||| | ||| ||| ||| | | ||
Sbjct 18043 AGTTGCGCCTGGGGAGTACCGGCGTTGAAAAGAGTTGGGGATGCATGAGTGA--AGAACT 17986
Query 107225 TG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGA 107282
|| ||||| || ||| ||||||| |||| |||| || || || ||| || |
Sbjct 17985 TGCTCGACATGAGGTTGTAGGTCTCCAGGACACGTTCAACATCATCACCCCAGATTCCAA 17926
Query 107283 TGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAA 107342
|| |||||||| | ||||| ||| || || | || |||| || ||| | |
Sbjct 17925 CAGCAACACGCATGATCATGTGTTGAGGACGCTCGACGATCTTGCCGTCAAGCTTCAGGA 17866
Query 107343 GATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTA 107376
| || |||||| || |||| |||||||||
Sbjct 17865 GGTATGAACGCTCAAGCGTCTTGAAACCAAAGTA 17832
>seq85
Length=66049
Score = 107 bits (118), Expect = 2e-18
Identities = 335/505 (66%), Gaps = 28/505 (6%)
Strand=Plus/Minus
Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045
||||| | || |||||||| |||||||||||||| ||| |||| ||||| ||||||
Sbjct 3498 TAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGCGAGATGTTCTCCATA 3439
Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA---TGG-GTGGCACCCCAACTTGTTTGAGGAG 117101
|||||||| || || | || || | | || || || | | | |||||
Sbjct 3438 AAGTCAAAGGGGTTGCTGGCCTTGTAGACCTTGTCGTTGC----CGAGGGCCATCAGGAG 3383
Query 117102 ACGATCCGACACATACTCAATGTACTCGGACATCTTC---TCAGAGTTCATACCGATGAG 117158
||| || | ||| | |||||||| || | || | || | |||||| || | ||
Sbjct 3382 ACGGTCGGCGACAAATTCAATGTA---GGTCTTCATGAGGTCGGCGTTCATGCCAAGCAG 3326
Query 117159 ATTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGAT 117218
||| || || || || | |||| | |||||||| |||| || || | | |||
Sbjct 3325 GGCACAGGGCAGGGCCTCAGTCAAGAACTCCTTCTCAATAGCAACAGCATCGGTGATGAT 3266
Query 117219 GGCGTGGAT-AGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGA--AGAGCTCCACGGC 117275
| | | || |||| | | |||| | || | ||| || ||||| ||
Sbjct 3265 GTCCTCAATCAGTTGCT-TGCTGGGGCGGTT--GTTAAGGTGGGAGTAGAGCAGGCAAGC 3209
Query 117276 AAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGG 117335
||| || ||| || |||||||| ||||| || || || || |||||| || || ||
Sbjct 3208 AAAGTCAGTGTGAAGGCCCTCATCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCAGG 3149
Query 117336 CATGAGACCCCGCTTCTTCAACCAATAAATAGCG-CAGAATGACCCGGAGAAGAAGATAC 117394
||||||||| ||||| || ||| | || | | || || ||||| ||||||||||||
Sbjct 3148 CATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCAAAAGCACCCG-AGAAGAAGATAC 3090
Query 117395 CCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACT--TTGT-GTCAA 117451
|||| ||| ||||| |||| || |||| ||| |||| ||||| |||| | | |
Sbjct 3089 CCTCGACAGCGGCAAAGGCAACGAGACGCTGGGCAAAGG---TAGACTCCTTGTCGGCGA 3033
Query 117452 ACCATTTCATTGCCCATTTCGCCTT 117476
||| |||| ||||| | |||||
Sbjct 3032 TCCACTTCAGGGCCCAGTCAGCCTT 3008
>seq368
Length=24549
Score = 105 bits (116), Expect = 8e-18
Identities = 217/319 (68%), Gaps = 8/319 (3%)
Strand=Plus/Minus
Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 9431
||||||||||||||||| |||| |||||| || ||||| || || | |||| |
Sbjct 8685 GCATCAATCTCATCAATAAAGATAATACACGGCGCATTTTTCCGCGCTGTCGCAAACAAG 8626
Query 9432 TCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-ACA 9490
|| || || | | || ||||||||||||||||||||||| | | | || |||
Sbjct 8625 TCACGCACACGCGACGGCCCGACACCAACAAACATCTCCACAAACTCCGAACCAGAGACA 8566
Query 9491 TTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9550
| || || || || || || ||||| |||| ||| || || ||||| |||||
Sbjct 8565 CT-GAAAAACGGAACTCCGGACTCGCCCGCCGTGGCCTTGGCCAGCAGCGTCTTTCCCGT 8507
Query 9551 ACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC---ACTTCCAAAGTA 9607
||| ||| |||| ||||| |||||| || || |||||||| || || |||| |
Sbjct 8506 ACCGGGCGGTCCCGAGAGGATGGCACCACGCGGGATCTTGGCACCAAGACGGACAAACT- 8448
Query 9608 TCTCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCCAATTCATCTTTGGCGGCGTCAAT 9667
| || || | |||||| || | ||||| ||| | || | ||||| |||| ||
Sbjct 8447 --TTTCGGGCTTCTTGAGGAATTGCACAAACTCCATAATCTCCACCTTGGCCTCGTCCAT 8390
Query 9668 CCCCTCAACATCGGTAAAC 9686
|| | ||||| | ||||
Sbjct 8389 ACCGGCCACATCCGCAAAC 8371
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589971529926680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |