Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq54 143 3e-29 seq85 107 2e-18 seq368 105 8e-18 >seq54 Length=76171 Score = 143 bits (158), Expect = 3e-29 Identities = 600/934 (64%), Gaps = 25/934 (3%) Strand=Plus/Minus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 || ||||| | || || | ||||| ||||| |||||| | | ||| || | | Sbjct 18754 GGGAGGGCCAAAGAAGCAAGGTTGCAGACAGCAACCTCATCAGGAGCACAGTATTCAATA 18695 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || || |||| |||||| || || || |||| ||||| ||||||||||| | Sbjct 18694 ATCTCAGTGCACAGGTTGGAGCTGCGGATAGTACCCAGGTTCTTCTGGTTACTCTTGCGG 18635 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 ||||| |||||||| |||||| | || | || ||||| ||||| | | || || Sbjct 18634 TTGCAGTGGTCCTTGTACAGCATGAACGGGTTACCAGTCTCAGTCTGAGCTTCCAGGATA 18575 Query 106637 GCCTTCCACACATCGGCGGCTGGTACAATGGCGTTGGCC-CGTCCCTCCGCCTCGTACTT 106695 || | ||||| | |||| | | | || | || || |||||| || ||||| Sbjct 18574 GCATACCACAGCTTTTGGGCTTTGAGAGTCA-GTCGACCACGACCCTCCTTTTCATACTT 18516 Query 106696 TGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGG 106755 ||| | || || ||||| || || ||| | ||||| || || | || Sbjct 18515 CTCGTACAATGCCTCGAACTCATCGCCGTAACAGTCAGCCAGACCAGGGCACTCATTGGG 18456 Query 106756 ACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCA 106815 || | ||||| ||| | | || ||||| |||||||||||||| || || ||||| Sbjct 18455 GCACATAAGAGTCCACTCGGCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCA 18396 Query 106816 CAGGG--ATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA 106872 ||| | | |||| ||||| | ||| || | ||||| | || || || || | Sbjct 18395 CAGAGCCAGGAAA--AGATCACGGGCACGGA-CTTCTTCTTTGCCGTGATTCTTGCGGAG 18339 Query 106873 CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTT 106932 || |||||||| | | |||||||||||| ||||| || |||| || | || || Sbjct 18338 ATCGAGGAACTCAAAAACATCCGCGTGCCACGGCTCGAGGTAGATAGCAAAAGCACC--- 18282 Query 106933 TCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCAT 106986 ||||| ||| | || | || || || || ||| ||| || || || ||||| Sbjct 18281 AGGACGCTTGTTGCCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCAT 18222 Query 106987 TGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCAC 107046 |||| ||||| | || ||| || || || ||| ||| | |||| | | Sbjct 18221 AGGAACGATACCGTTCGAGGTACCGTTAGTGCCGGCAATGTAAGAACCAGTGGCACGAAT 18162 Query 107047 ATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTA 107104 || | || || |||||||| || ||| ||| ||||| | ||||| | | | Sbjct 18161 GCGGTGCACGTTCAGGCCAATACCACCCGCCATCTTGGAGATCATAGCGCA-AGT-TTTC 18104 Query 107105 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 107164 ||||| |||||||||| | || ||| ||||| | | | |||||||| ||| Sbjct 18103 AGAGTGTCATAGATACCCTCAATGCTGTCATCCTTCATATCCACGAGGAAGCACGAAGAC 18044 Query 107165 ATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT 107224 | |||| || ||||| || ||||| || ||||| | ||| ||| ||| | | || Sbjct 18043 AGTTGCGCCTGGGGAGTACCGGCGTTGAAAAGAGTTGGGGATGCATGAGTGA--AGAACT 17986 Query 107225 TG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGA 107282 || ||||| || ||| ||||||| |||| |||| || || || ||| || | Sbjct 17985 TGCTCGACATGAGGTTGTAGGTCTCCAGGACACGTTCAACATCATCACCCCAGATTCCAA 17926 Query 107283 TGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAA 107342 || |||||||| | ||||| ||| || || | || |||| || ||| | | Sbjct 17925 CAGCAACACGCATGATCATGTGTTGAGGACGCTCGACGATCTTGCCGTCAAGCTTCAGGA 17866 Query 107343 GATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTA 107376 | || |||||| || |||| ||||||||| Sbjct 17865 GGTATGAACGCTCAAGCGTCTTGAAACCAAAGTA 17832 >seq85 Length=66049 Score = 107 bits (118), Expect = 2e-18 Identities = 335/505 (66%), Gaps = 28/505 (6%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| | || |||||||| |||||||||||||| ||| |||| ||||| |||||| Sbjct 3498 TAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGCGAGATGTTCTCCATA 3439 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA---TGG-GTGGCACCCCAACTTGTTTGAGGAG 117101 |||||||| || || | || || | | || || || | | | ||||| Sbjct 3438 AAGTCAAAGGGGTTGCTGGCCTTGTAGACCTTGTCGTTGC----CGAGGGCCATCAGGAG 3383 Query 117102 ACGATCCGACACATACTCAATGTACTCGGACATCTTC---TCAGAGTTCATACCGATGAG 117158 ||| || | ||| | |||||||| || | || | || | |||||| || | || Sbjct 3382 ACGGTCGGCGACAAATTCAATGTA---GGTCTTCATGAGGTCGGCGTTCATGCCAAGCAG 3326 Query 117159 ATTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGAT 117218 ||| || || || || | |||| | |||||||| |||| || || | | ||| Sbjct 3325 GGCACAGGGCAGGGCCTCAGTCAAGAACTCCTTCTCAATAGCAACAGCATCGGTGATGAT 3266 Query 117219 GGCGTGGAT-AGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGA--AGAGCTCCACGGC 117275 | | | || |||| | | |||| | || | ||| || ||||| || Sbjct 3265 GTCCTCAATCAGTTGCT-TGCTGGGGCGGTT--GTTAAGGTGGGAGTAGAGCAGGCAAGC 3209 Query 117276 AAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGG 117335 ||| || ||| || |||||||| ||||| || || || || |||||| || || || Sbjct 3208 AAAGTCAGTGTGAAGGCCCTCATCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCAGG 3149 Query 117336 CATGAGACCCCGCTTCTTCAACCAATAAATAGCG-CAGAATGACCCGGAGAAGAAGATAC 117394 ||||||||| ||||| || ||| | || | | || || ||||| |||||||||||| Sbjct 3148 CATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCAAAAGCACCCG-AGAAGAAGATAC 3090 Query 117395 CCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACT--TTGT-GTCAA 117451 |||| ||| ||||| |||| || |||| ||| |||| ||||| |||| | | | Sbjct 3089 CCTCGACAGCGGCAAAGGCAACGAGACGCTGGGCAAAGG---TAGACTCCTTGTCGGCGA 3033 Query 117452 ACCATTTCATTGCCCATTTCGCCTT 117476 ||| |||| ||||| | ||||| Sbjct 3032 TCCACTTCAGGGCCCAGTCAGCCTT 3008 >seq368 Length=24549 Score = 105 bits (116), Expect = 8e-18 Identities = 217/319 (68%), Gaps = 8/319 (3%) Strand=Plus/Minus Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 9431 ||||||||||||||||| |||| |||||| || ||||| || || | |||| | Sbjct 8685 GCATCAATCTCATCAATAAAGATAATACACGGCGCATTTTTCCGCGCTGTCGCAAACAAG 8626 Query 9432 TCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-ACA 9490 || || || | | || ||||||||||||||||||||||| | | | || ||| Sbjct 8625 TCACGCACACGCGACGGCCCGACACCAACAAACATCTCCACAAACTCCGAACCAGAGACA 8566 Query 9491 TTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9550 | || || || || || || ||||| |||| ||| || || ||||| ||||| Sbjct 8565 CT-GAAAAACGGAACTCCGGACTCGCCCGCCGTGGCCTTGGCCAGCAGCGTCTTTCCCGT 8507 Query 9551 ACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC---ACTTCCAAAGTA 9607 ||| ||| |||| ||||| |||||| || || |||||||| || || |||| | Sbjct 8506 ACCGGGCGGTCCCGAGAGGATGGCACCACGCGGGATCTTGGCACCAAGACGGACAAACT- 8448 Query 9608 TCTCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCCAATTCATCTTTGGCGGCGTCAAT 9667 | || || | |||||| || | ||||| ||| | || | ||||| |||| || Sbjct 8447 --TTTCGGGCTTCTTGAGGAATTGCACAAACTCCATAATCTCCACCTTGGCCTCGTCCAT 8390 Query 9668 CCCCTCAACATCGGTAAAC 9686 || | ||||| | |||| Sbjct 8389 ACCGGCCACATCCGCAAAC 8371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589971529926680