Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq30 95.1 8e-15
seq59 93.3 3e-14
seq169 86.0 4e-12
>seq30
Length=92847
Score = 95.1 bits (104), Expect = 8e-15
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| | ||| | || | || || ||||| ||||| |||||
Sbjct 12666 TCCTTCTGGATGTTGTAGTCTGCCAGGGTACGACCGTCTTCAAGCTGCTTTCCAGCAAAA 12607
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || ||||| || | || | ||||||||||| |||||| |||||
Sbjct 12606 ATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTG 12547
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | || || |||||| || | ||| ||||| || || || |||||||| |||
Sbjct 12546 TCAATAGTGTCCGAGGTCTCAACCTCCAGGGTAATGGTCTTGCCAGTCAGAGTCTTGACA 12487
Query 34971 AAGATCTGCATA 34982
||||| ||||||
Sbjct 12486 AAGATTTGCATA 12475
Score = 86.0 bits (94), Expect = 4e-12
Identities = 131/187 (70%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||||| ||| || ||||||||||| ||||||| |||| | || | || ||
Sbjct 12139 ACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGCAAGGGTGCGACCGTCTTCA 12080
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| ||||| ||||| || || || ||||| || | || | |||||||| || |
Sbjct 12079 AGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTATCTTGA 12020
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| ||||||| | || | || | ||||| |||| ||| ||||| ||
Sbjct 12019 ATCTTGGATTTGACGTTGTCGATGGTGTCTGACGATTCAACCTCGAGGGTGATGGTCTTG 11960
Query 34953 CCCGTGA 34959
|| ||||
Sbjct 11959 CCAGTGA 11953
>seq59
Length=73848
Score = 93.3 bits (102), Expect = 3e-14
Identities = 139/195 (71%), Gaps = 8/195 (4%)
Strand=Plus/Plus
Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853
||||| || || ||||||| ||| | || |||| |||||||| || || ||||| ||
Sbjct 15446 TTCTGGATATTGTAGTCCGCCAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCAAAGATC 15505
Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913
|| || |||||||| | || | ||||||||||| ||||| ||||| || |
Sbjct 15506 AGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGAC--AT--T 15561
Query 34914 ATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969
||||| || || |||||| |||| ||| || || || ||||| || ||||| ||
Sbjct 15562 GTCGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTTAGGGTCTTGAC 15621
Query 34970 AAAGATCTGCATATT 34984
|| |||||||| ||
Sbjct 15622 GAAAATCTGCATCTT 15636
>seq169
Length=45351
Score = 86.0 bits (94), Expect = 4e-12
Identities = 139/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||| | ||| || ||||| ||||| ||||||| ||| | || |||| ||
Sbjct 32234 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCA 32293
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || || ||||| || || || |||||||| | || | |||||||||||
Sbjct 32294 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGG 32353
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| |||||| | |||| || || ||| || || | ||| ||||| ||
Sbjct 32354 ATCTTGGACTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTA 32413
Query 34953 CCCGTGAGAGTCTTCACAAA 34972
||||| || ||||| || ||
Sbjct 32414 CCCGTCAGGGTCTTGACGAA 32433
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324628626714696
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |