Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_019401.1
Length=358663
Score E
Sequences producing significant alignments: (Bits) Value
seq185 87.8 4e-12
>seq185
Length=42258
Score = 87.8 bits (96), Expect = 4e-12
Identities = 282/430 (66%), Gaps = 11/430 (3%)
Strand=Plus/Minus
Query 150365 ATTCTTTCTCGTAAAACCAAAAAGAAT--GGTGCGTTAGTTGGTGAACCAGGTGTTGGTA 150422
|| ||||| || | |||||| || || ||||| ||| |||||||||| ||||| || |
Sbjct 21906 ATCCTTTCCCGCAGAACCAAGAATAACCCGGTGC-TTA-TTGGTGAACCCGGTGTCGGCA 21849
Query 150423 AAACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTA 150482
| || ||||||| || | || ||||| ||| || |||||||||| ||
Sbjct 21848 AGACTACCGTCGTTGAAGGTCTTGCCCAACGTATCTGCAACCGTGATGTTCCTGACAACC 21789
Query 150483 TGAAAGATGTTGAAA--TTCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTA 150540
| || || || || |||| ||| | | | ||||| || |||||| | |||||
Sbjct 21788 TTAAGCAT--TGCAAGCTTCTGTCTCTTGACGTTGGTGCCCTTGTTGCTGGCAGCAAGTA 21731
Query 150541 TCGTGGTGAATTCGAAGAACGTGTAGACAATTTGCTACAAGAACTAAAAGAAC--GCGAT 150598
|| ||||| || || || || | | | | | ||| |||| | |||| |||
Sbjct 21730 CCGCGGTGAGTTTGAGGAGCGCATGAAGAGTGTCCTAAAAGAGATTGAAGATTCAGCGGA 21671
Query 150599 GATG-TTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGACTGGCGG 150657
|||| || |||| ||| |||||||||| ||| | | |||||||||||| | | || |
Sbjct 21670 GATGATTGTTCTCTTCGTCGATGAAATTCATCTTCTGATGGGTGCTGGTTCCTCCGGTGA 21611
Query 150658 CGGTTCTTTGGATATGAGCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCGTGT 150717
|| |||| |||| | ||||| ||| || |||| ||| || | |
Sbjct 21610 GGGCGGCATGGACGCCGCCAATCTTTTAAAGCCTATGCTTGCTCGTGGTCAACTCCACTG 21551
Query 150718 CATCGGTGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGCACTACA 150777
||| || ||||| ||| || || || || ||||||| || ||||| || | |
Sbjct 21550 CATTGGCGCAACCACCCTTTCCGAGTACCGCAAGTACATTGAGAAGGATGCCGCTTTTGA 21491
Query 150778 GCGTCGTTTC 150787
||||||||||
Sbjct 21490 GCGTCGTTTC 21481
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1147571917697986
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |