Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq54 241 2e-58
seq85 181 2e-40
>seq54
Length=76171
Score = 241 bits (266), Expect = 2e-58
Identities = 888/1381 (64%), Gaps = 25/1381 (2%)
Strand=Plus/Minus
Query 212907 GGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAG 212966
|||||||| | |||||| || || | || || | | |||||||| ||| || ||||||
Sbjct 19318 GGGTTGACGACCTGGAACTCGCCAGCTAGGACACGGCGCTGGTAAATGTTGGAGGTGTAG 19259
Query 212967 GGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCC 213026
||||||| || ||||| || ||||||||||| | ||| ||||| ||||||||||| ||
Sbjct 19258 GGCTCGAAGCATTCGTTATTGCCCAGAATCTGGGAAGTACTGGCGGTGGGCATGGGCGCA 19199
Query 213027 ACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCC 213086
| || | | ||| | | ||||||| ||| | | || | |||||||
Sbjct 19198 AGTAGTAAAGAGTTGCGGATACCGTGCTGCTTGATCTGTTCCTTCAGTGAGGTCCAGTCC 19139
Query 213087 CATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTG 213146
|| ||||| | | || ||||||||||||||||||| |||||| | |
Sbjct 19138 CAG---------AGGTCACTGGGAGTGACATTCCACATGTCAAACTGCAGGATGCCCTGG 19088
Query 213147 CTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGAC 213206
||| || ||||| ||| | ||||| ||| | || || || | |||||| ||
Sbjct 19087 GACACAGGCGAGCCCTCGTAGGTCGAGTACTTGCCCTCCTTCTGAGCAATCTCGCACGAG 19028
Query 213207 GCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCT 213266
|||| || ||||||| ||| ||||| || || || | ||||||||| ||||||
Sbjct 19027 GCCTCAAGAGCAGCGTGGTAAATGGTCTCGAAGATATGAGTGTTGAGCTGGCGGGCCTCA 18968
Query 213267 GGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATG 213326
| ||| |||||||| || |||| | || || || ||||| || ||||
Sbjct 18967 GCCGACTCAAAGGGCATGCGCAGAGCCAGGAAGGCGTCGGCAAGACCCTGAACACCGACA 18908
Query 213327 CCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAG 213386
|||||||| | ||| | || ||| || | || | ||||| ||||
Sbjct 18907 CCGATGGGACGGTGACGCATGTTGCTGTTATATGCTTCAGTAACAGGGTAGTGGTTGACA 18848
Query 213387 TCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGA 213446
|||||||| ||| |||||||| | || |||||||| | | ||| | | | |
Sbjct 18847 TCGATGATGCGGTTCAGGTTGCGAACAACAACCTTGGTGACCTCGTGCAGCTTATGGAAA 18788
Query 213447 TTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAA 213506
| | || || | || | | ||| |||| ||||| | || ||||||||
Sbjct 18787 TCGTACGAGTTGTTGGTGTAGTCAATAAAGGCAGGGAGGGCCAAAGAAGCAAGGTTGCAG 18728
Query 213507 ACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGG 213566
|| || ||||| | || | ||| || || ||||| |||||||||||| || |||
Sbjct 18727 ACAGCAACCTCATCAGGAGCACAGTATTCAATAATCTCAGTGCACAGGTTGGAGCTGCGG 18668
Query 213567 ATGGTGCCCAGGTTCTGGTGGTTTGACT-TTGCGTTGGCAGAA-TCCTTGTAGAGCATGT 213624
|| || |||||||||| ||||| ||| ||||| | |||| |||||||| ||||||
Sbjct 18667 ATAGTACCCAGGTTCTTCTGGTT--ACTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGA 18610
Query 213625 AGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGA 213684
| ||| || ||||| ||| | |||| || ||| || | ||| ||||
Sbjct 18609 ACGGGTTACCAGTCTCAGTCTGAGCTTCCAGGATAGCATACCACAGCTTTTGGGCTTTGA 18550
Query 213685 CCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGT 213744
| | | || || | | || |||| ||||| | | | ||| || |
Sbjct 18549 GAGTCAGTCGACCACGACCCTCCTTT---TCATACTTCTCGTACAATGCCTCGAACTCAT 18493
Query 213745 GGCCCCAG-ACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCG 213803
||| | | | | |||| || || || ||| ||||| || |||| || ||
Sbjct 18492 CGCCGTAACAGTCAG-CCAGACCAGGGCACTCATTGGGGCACATAAGAGTCCACTCGGCG 18434
Query 213804 TCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTG 213863
| | | || | || |||||| || || |||| |||||| || ||| || || | |
Sbjct 18433 TTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCACAGAGCCAGGAAAAGATCACGG 18374
Query 213864 GTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCG 213923
| | || || || || ||||| ||||| || || ||||| | ||||||
Sbjct 18373 GCACGGACTTCTTCTTTGCCGTGATTCTTGCGGAGATCGAGGAACTCAAAAACATCCGCG 18314
Query 213924 TGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGTCCACC 213980
||||||||||| | |||||| ||||| || || | || | ||||| |||||||| ||
Sbjct 18313 TGCCACGGCTCGAGGTAGATAGCAAAAGCACCAGGACGCTTGTTGCCACCCTGGTCAACG 18254
Query 213981 AGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTG 214040
| || ||||||| | ||||| | || || | ||||| || |||||
Sbjct 18253 TAACGAGCAGTGTTGTTGAACACACGCAGCATAGGAACGATACCGTTCGAGGTACCGTTA 18194
Query 214041 GTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCG 214100
|| || || || || || || | ||| | | | | || | || || || |||||
Sbjct 18193 GTGCCGGCAATGTAAGAACCAGTGGCACGAATGCGGTGCACGTTCAGGCCAATACCACCC 18134
Query 214101 GCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCA 214160
|| |||||||||||| ||||| ||| ||| || ||| || | |||||||||
Sbjct 18133 GCCATCTTGGAGATCATAGCGCAAGTTTTCAGAGTGTCATAGATACCCTCAATGCTGTCA 18074
Query 214161 TCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAG--CCAGAGTTGA 214218
|| | | | || | |||||| || || | | |||||| ||| || | |||||
Sbjct 18073 TCCTTCATATCCACGAGGAAGCACGAAGACAG-TTGCGCCTGG-GGAGTACCGGCGTTGA 18016
Query 214219 AAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGA 214278
|||| || ||| ||||| | | |||||| | || | ||| |||||||||||||||
Sbjct 18015 AAAGAGTTGGGGATGCATGAGTGAAGAACTTGCTCGACATGAGGTTGTAGGTCTCCAGGA 17956
Query 214279 C 214279
|
Sbjct 17955 C 17955
>seq85
Length=66049
Score = 181 bits (200), Expect = 2e-40
Identities = 488/735 (66%), Gaps = 25/735 (3%)
Strand=Plus/Minus
Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899
|||||||| | || | ||||| |||||||| ||||| || | | |||||||||||||
Sbjct 3501 TGGTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGCGAGATGTTCTCC 3442
Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCAG 47958
|| ||| ||||||||| | || || ||| |||| ||| | | ||| |||
Sbjct 3441 ATAAAGTCAAAGGGGTTGCTGGCCTTGTAGACCT-TGTCGTTGCCGA---GGGCCATCAG 3386
Query 47959 GTGA---TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAG 48015
| || || ||||| | || ||||| | ||||||| | ||||||||| | ||
Sbjct 3385 GAGACGGTCGGCGACAAATTCAATGTAGGTCTTCATGAGGTCGGCGTTCATGCCAAGCAG 3326
Query 48016 GGACAC-GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAA 48074
|| ||| ||||| |||| || | ||||||||||| || || || || | |
Sbjct 3325 GG-CACAGGGCAGGGCCTCAGTCAAGAACTCCTTCTCAATAGCAACAGCATCGGTGATGA 3267
Query 48075 TCTGCTTAACGCGGGACT--CTGAGG-GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGC 48131
| | || || | || ||| || | ||||| ||||| || ||||||| ||
Sbjct 3266 TGTCCTCAATCAGTTGCTTGCTGGGGCGGTTGTTA---AGGTG---GGAGTAGAGCAGGC 3213
Query 48132 AGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGAC 48191
| |||||||| |||| | ||| || || ||| ||| ||| ||||||||||| ||||
Sbjct 3212 AAGCAAAGTCAGTGTGAAGGCCCTCATCACGGGAGATCAGCTCGTTGGAGAAGGTCAGAC 3153
Query 48192 CAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGA 48251
||||||||| || | || |||||||| || | || |||| || ||||||||||
Sbjct 3152 CAGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCAAAAGCACCCGAGAAGAAGA 3093
Query 48252 TGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGA 48311
| ||||| || || || || || ||| | || | || | || | |||||| | ||
Sbjct 3092 TACCCTCGACAGCGGCAAAGGCAACGAGACGCTGGGCAAAGGTAGACTCCTTGTCGGCGA 3033
Query 48312 TCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGA 48371
|||| || |||||||| ||||| ||||| || || || || ||||| ||
Sbjct 3032 TCCACTTCAGGGCCCAGTCAGCCTTGCGGCGAATGCAGGGAATAGTATCAATGGCGTTGA 2973
Query 48372 AGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACA 48428
| || | | || | | ||| | ||||| | |||||||| | |||
Sbjct 2972 ACAGGTAGGAACGCTGGGCGGGCTCCTTGATGTAGGTATCAATGAGCAGC---GAGTAGG 2916
Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488
|||| ||||| | || || || ||||||||| || || ||| | |||||| |
Sbjct 2915 TCTCGGAGTGAATGTTTTCCATCATGATCTGGAAACCATAAAAGCAGCGGGCCTCGGGAA 2856
Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548
||| || || | |||||| | ||| | || ||||| ||||| || || || || || |
Sbjct 2855 TCTGGACCTCGGCGGAGAAACGCTCAACCAAGTTCTCGTTGACGATACCGTCAGAGGCGG 2796
Query 48549 CAAAGAAGGCAAGGA 48563
||||||| || ||||
Sbjct 2795 CAAAGAAAGCCAGGA 2781
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931518163290880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |