Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq54 241 2e-58 seq85 181 2e-40 >seq54 Length=76171 Score = 241 bits (266), Expect = 2e-58 Identities = 888/1381 (64%), Gaps = 25/1381 (2%) Strand=Plus/Minus Query 212907 GGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAG 212966 |||||||| | |||||| || || | || || | | |||||||| ||| || |||||| Sbjct 19318 GGGTTGACGACCTGGAACTCGCCAGCTAGGACACGGCGCTGGTAAATGTTGGAGGTGTAG 19259 Query 212967 GGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCC 213026 ||||||| || ||||| || ||||||||||| | ||| ||||| ||||||||||| || Sbjct 19258 GGCTCGAAGCATTCGTTATTGCCCAGAATCTGGGAAGTACTGGCGGTGGGCATGGGCGCA 19199 Query 213027 ACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCC 213086 | || | | ||| | | ||||||| ||| | | || | ||||||| Sbjct 19198 AGTAGTAAAGAGTTGCGGATACCGTGCTGCTTGATCTGTTCCTTCAGTGAGGTCCAGTCC 19139 Query 213087 CATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTG 213146 || ||||| | | || ||||||||||||||||||| |||||| | | Sbjct 19138 CAG---------AGGTCACTGGGAGTGACATTCCACATGTCAAACTGCAGGATGCCCTGG 19088 Query 213147 CTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGAC 213206 ||| || ||||| ||| | ||||| ||| | || || || | |||||| || Sbjct 19087 GACACAGGCGAGCCCTCGTAGGTCGAGTACTTGCCCTCCTTCTGAGCAATCTCGCACGAG 19028 Query 213207 GCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCT 213266 |||| || ||||||| ||| ||||| || || || | ||||||||| |||||| Sbjct 19027 GCCTCAAGAGCAGCGTGGTAAATGGTCTCGAAGATATGAGTGTTGAGCTGGCGGGCCTCA 18968 Query 213267 GGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATG 213326 | ||| |||||||| || |||| | || || || ||||| || |||| Sbjct 18967 GCCGACTCAAAGGGCATGCGCAGAGCCAGGAAGGCGTCGGCAAGACCCTGAACACCGACA 18908 Query 213327 CCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAG 213386 |||||||| | ||| | || ||| || | || | ||||| |||| Sbjct 18907 CCGATGGGACGGTGACGCATGTTGCTGTTATATGCTTCAGTAACAGGGTAGTGGTTGACA 18848 Query 213387 TCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGA 213446 |||||||| ||| |||||||| | || |||||||| | | ||| | | | | Sbjct 18847 TCGATGATGCGGTTCAGGTTGCGAACAACAACCTTGGTGACCTCGTGCAGCTTATGGAAA 18788 Query 213447 TTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAA 213506 | | || || | || | | ||| |||| ||||| | || |||||||| Sbjct 18787 TCGTACGAGTTGTTGGTGTAGTCAATAAAGGCAGGGAGGGCCAAAGAAGCAAGGTTGCAG 18728 Query 213507 ACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGG 213566 || || ||||| | || | ||| || || ||||| |||||||||||| || ||| Sbjct 18727 ACAGCAACCTCATCAGGAGCACAGTATTCAATAATCTCAGTGCACAGGTTGGAGCTGCGG 18668 Query 213567 ATGGTGCCCAGGTTCTGGTGGTTTGACT-TTGCGTTGGCAGAA-TCCTTGTAGAGCATGT 213624 || || |||||||||| ||||| ||| ||||| | |||| |||||||| |||||| Sbjct 18667 ATAGTACCCAGGTTCTTCTGGTT--ACTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGA 18610 Query 213625 AGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGA 213684 | ||| || ||||| ||| | |||| || ||| || | ||| |||| Sbjct 18609 ACGGGTTACCAGTCTCAGTCTGAGCTTCCAGGATAGCATACCACAGCTTTTGGGCTTTGA 18550 Query 213685 CCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGT 213744 | | | || || | | || |||| ||||| | | | ||| || | Sbjct 18549 GAGTCAGTCGACCACGACCCTCCTTT---TCATACTTCTCGTACAATGCCTCGAACTCAT 18493 Query 213745 GGCCCCAG-ACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCG 213803 ||| | | | | |||| || || || ||| ||||| || |||| || || Sbjct 18492 CGCCGTAACAGTCAG-CCAGACCAGGGCACTCATTGGGGCACATAAGAGTCCACTCGGCG 18434 Query 213804 TCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTG 213863 | | | || | || |||||| || || |||| |||||| || ||| || || | | Sbjct 18433 TTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCACAGAGCCAGGAAAAGATCACGG 18374 Query 213864 GTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCG 213923 | | || || || || ||||| ||||| || || ||||| | |||||| Sbjct 18373 GCACGGACTTCTTCTTTGCCGTGATTCTTGCGGAGATCGAGGAACTCAAAAACATCCGCG 18314 Query 213924 TGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGTCCACC 213980 ||||||||||| | |||||| ||||| || || | || | ||||| |||||||| || Sbjct 18313 TGCCACGGCTCGAGGTAGATAGCAAAAGCACCAGGACGCTTGTTGCCACCCTGGTCAACG 18254 Query 213981 AGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTG 214040 | || ||||||| | ||||| | || || | ||||| || ||||| Sbjct 18253 TAACGAGCAGTGTTGTTGAACACACGCAGCATAGGAACGATACCGTTCGAGGTACCGTTA 18194 Query 214041 GTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCG 214100 || || || || || || || | ||| | | | | || | || || || ||||| Sbjct 18193 GTGCCGGCAATGTAAGAACCAGTGGCACGAATGCGGTGCACGTTCAGGCCAATACCACCC 18134 Query 214101 GCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCA 214160 || |||||||||||| ||||| ||| ||| || ||| || | ||||||||| Sbjct 18133 GCCATCTTGGAGATCATAGCGCAAGTTTTCAGAGTGTCATAGATACCCTCAATGCTGTCA 18074 Query 214161 TCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAG--CCAGAGTTGA 214218 || | | | || | |||||| || || | | |||||| ||| || | ||||| Sbjct 18073 TCCTTCATATCCACGAGGAAGCACGAAGACAG-TTGCGCCTGG-GGAGTACCGGCGTTGA 18016 Query 214219 AAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGA 214278 |||| || ||| ||||| | | |||||| | || | ||| ||||||||||||||| Sbjct 18015 AAAGAGTTGGGGATGCATGAGTGAAGAACTTGCTCGACATGAGGTTGTAGGTCTCCAGGA 17956 Query 214279 C 214279 | Sbjct 17955 C 17955 >seq85 Length=66049 Score = 181 bits (200), Expect = 2e-40 Identities = 488/735 (66%), Gaps = 25/735 (3%) Strand=Plus/Minus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 |||||||| | || | ||||| |||||||| ||||| || | | ||||||||||||| Sbjct 3501 TGGTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGCGAGATGTTCTCC 3442 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCAG 47958 || ||| ||||||||| | || || ||| |||| ||| | | ||| ||| Sbjct 3441 ATAAAGTCAAAGGGGTTGCTGGCCTTGTAGACCT-TGTCGTTGCCGA---GGGCCATCAG 3386 Query 47959 GTGA---TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAG 48015 | || || ||||| | || ||||| | ||||||| | ||||||||| | || Sbjct 3385 GAGACGGTCGGCGACAAATTCAATGTAGGTCTTCATGAGGTCGGCGTTCATGCCAAGCAG 3326 Query 48016 GGACAC-GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAA 48074 || ||| ||||| |||| || | ||||||||||| || || || || | | Sbjct 3325 GG-CACAGGGCAGGGCCTCAGTCAAGAACTCCTTCTCAATAGCAACAGCATCGGTGATGA 3267 Query 48075 TCTGCTTAACGCGGGACT--CTGAGG-GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGC 48131 | | || || | || ||| || | ||||| ||||| || ||||||| || Sbjct 3266 TGTCCTCAATCAGTTGCTTGCTGGGGCGGTTGTTA---AGGTG---GGAGTAGAGCAGGC 3213 Query 48132 AGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGAC 48191 | |||||||| |||| | ||| || || ||| ||| ||| ||||||||||| |||| Sbjct 3212 AAGCAAAGTCAGTGTGAAGGCCCTCATCACGGGAGATCAGCTCGTTGGAGAAGGTCAGAC 3153 Query 48192 CAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGA 48251 ||||||||| || | || |||||||| || | || |||| || |||||||||| Sbjct 3152 CAGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCAAAAGCACCCGAGAAGAAGA 3093 Query 48252 TGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGA 48311 | ||||| || || || || || ||| | || | || | || | |||||| | || Sbjct 3092 TACCCTCGACAGCGGCAAAGGCAACGAGACGCTGGGCAAAGGTAGACTCCTTGTCGGCGA 3033 Query 48312 TCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGA 48371 |||| || |||||||| ||||| ||||| || || || || ||||| || Sbjct 3032 TCCACTTCAGGGCCCAGTCAGCCTTGCGGCGAATGCAGGGAATAGTATCAATGGCGTTGA 2973 Query 48372 AGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACA 48428 | || | | || | | ||| | ||||| | |||||||| | ||| Sbjct 2972 ACAGGTAGGAACGCTGGGCGGGCTCCTTGATGTAGGTATCAATGAGCAGC---GAGTAGG 2916 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||| ||||| | || || || ||||||||| || || ||| | |||||| | Sbjct 2915 TCTCGGAGTGAATGTTTTCCATCATGATCTGGAAACCATAAAAGCAGCGGGCCTCGGGAA 2856 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 ||| || || | |||||| | ||| | || ||||| ||||| || || || || || | Sbjct 2855 TCTGGACCTCGGCGGAGAAACGCTCAACCAAGTTCTCGTTGACGATACCGTCAGAGGCGG 2796 Query 48549 CAAAGAAGGCAAGGA 48563 ||||||| || |||| Sbjct 2795 CAAAGAAAGCCAGGA 2781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931518163290880