Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq85 217 3e-51 seq54 174 3e-38 >seq85 Length=66049 Score = 217 bits (240), Expect = 3e-51 Identities = 570/863 (66%), Gaps = 28/863 (3%) Strand=Plus/Plus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 || || ||| | |||||||||||||| | || |||||||||||| ||||||||| Sbjct 2654 GAGATCTGGCAAATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCCGAGGAGATTGAT 2713 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCT-ATC--CAAAGACGAGCAGCATTTTCTC 25590 ||| ||||||| | ||| |||| || | || ||||||||||||| ||| || Sbjct 2714 CTGTCCAAGGATCTCCACGACTGGAACAACCGCATGAACAAAGACGAGCAGTTCTTTATC 2773 Query 25591 AAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAG 25650 || | |||| |||||||| |||||||| ||||| || |||||||| || ||| Sbjct 2774 TCCCACATCCTGGCTTTCTTTGCCGCCTCTGACGGTATCGTCAACGAGAACTTGGTTGAG 2833 Query 25651 AGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCC 25710 | ||| || || || ||| |||||| || || || ||||||||||| Sbjct 2834 CGTTTCTCCGCCGAGGTCCAGATTCCCGAGGCCCGCTGCTTTTATGGTTTCCAGATCATG 2893 Query 25711 ATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCT-GATGACGTACATTACAGACGT 25769 || ||||| | ||||| ||| || | ||| | ||| || ||||| | || Sbjct 2894 ATGGAAAACATTCACTCCGAGACCTACTCGCTGCTCATTGAT-ACCTACATCAAGGAGCC 2952 Query 25770 CGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 |||| || | ||||| ||||| || || ||| |||| | ||||| Sbjct 2953 CGCCCAGCGTTCCTACCTGTTCAACGCCATTGATACTATTCCCTGCATTCGCCGCAAGGC 3012 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889 |||||| ||||||||||| | | || |||| |||| | |||| || || || Sbjct 3013 TGACTGGGCCCTGAAGTGGATCGCCGACAAGGAGTCTACCTTTGCCCAGCGTCTCGTTGC 3072 Query 25890 CTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCT--- 25946 |||||| ||||| ||||| ||||| ||| ||| | ||||| ||||||||||||| Sbjct 3073 CTTTGCCGCTGTCGAGGGTATCTTCTTCTCGGGTGCTTTTGCCTCCATCTTCTGGCTGCG 3132 Query 25947 CAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACG 26005 ||||| | || | |||||| || ||| ||| ||||||||||| ||| | | || | Sbjct 3133 CAAGC----GTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTGATCTCCCGTGATG 3188 Query 26006 AGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAA--ACC 26063 |||| || |||| || ||||| |||||||||||| | |||| || |||| || Sbjct 3189 AGGGCCTTCACACTGACTTTGCTTGCCTGCTCTACTC---CCAC---CTTAACAACCGCC 3242 Query 26064 TTCTCAAGAGACCG-TCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTC 26122 |||| || | | | ||||||| || ||||| | || ||||||||||| Sbjct 3243 CCAGCAAGCAACTGATTGAGGACATCATCACCGATGCTGTTGCTATTGAGAAGGAGTTCT 3302 Query 26123 NNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACA 26182 | ||||||||| | ||||||| |||| Sbjct 3303 TGACTGAGGCCCTGCCCTGTGCCCTGCTTGGCATGAACGCCGACCTCATGAAGACCTACA 3362 Query 26183 TTGAGTATGTGGCCGACCATCTGCTG-TGCCAGCTGGGACTCGCCAGACTCTACAGTACG 26241 |||| | ||| ||||||| ||| ||| || | || || || || |||||| | | Sbjct 3363 TTGAATTTGTCGCCGACCGTCTCCTGATGGC-CCTCGGCAACGACAAGGTCTACA--AGG 3419 Query 26242 CC--TAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTG 26299 || ||||| || ||||||||||| ||||| ||| | | || |||||||||||||| | Sbjct 3420 CCAGCAACCCCTTTGACTTTATGGAGAACATCTCGCTTGGTGGCAAGACCAACTTCTTCG 3479 Query 26300 AAAAGAGGGTCGGCGACTATCAA 26322 | ||| | |||| |||||| ||| Sbjct 3480 AGAAGCGTGTCGCCGACTACCAA 3502 >seq54 Length=76171 Score = 174 bits (192), Expect = 3e-38 Identities = 705/1094 (64%), Gaps = 39/1094 (4%) Strand=Plus/Minus Query 221420 AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAA 221479 || ||||||||||| |||||||| ||||| ||||||| |||||| | || Sbjct 19021 AGAGCAGCGTGGTAAATGGTCTCGAAGATATGAGTGTTGAGCTGGCGGGCCTCAGCCGAC 18962 Query 221480 GTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATG 221539 |||||||| ||||| | | ||| ||||||| || ||||| || |||| ||||||| Sbjct 18961 TCAAAGGGCATGCGCAGAGCCAGGAAGGCGTCGGCAAGACCCTGAACACCGACACCGATG 18902 Query 221540 GGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATC 221599 || | ||| | | ||||| ||||| | || || || |||||| ||||| Sbjct 18901 GGACGGTGACGCATGTTGCTGTTATATGCTTCAGTAACAGGGTAGTGGTTGACATCGATG 18842 Query 221600 AGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAAC 221659 | ||| ||||| || | || || |||||| |||||| ||| || | || Sbjct 18841 ATGCGGTTCAGGTTGCGAACAACAACCTTGGTGACCTCGTGCAGCTTATGGAAATCGTAC 18782 Query 221660 ACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGG 221719 | | | | ||| || || | ||| || ||||| | || ||| Sbjct 18781 G---AGTTGTTG-----GTGTAG----TCAATAAAGGCAGGGAGGGCCAAAGAAGCAAGG 18734 Query 221720 TTACACACGGCCACCTCGTCCTTGTTG----GTATACTGTATGATCTCTGTACAGAGGTT 221775 || || || || ||||| || | | |||| | || ||||| || || ||||| Sbjct 18733 TTGCAGACAGCAACCTCATCA--GGAGCACAGTATTCAATA--ATCTCAGTGCACAGGTT 18678 Query 221776 GCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-TCCTTGT 221834 | || ||| || ||||||| || || ||| |||||| ||| ||| | ||||||| Sbjct 18677 GGAGCTGCGGATAGTACCCAGGTTCTTCTGGTTACTCTTGCGGTTG-CAGTGGTCCTTGT 18619 Query 221835 AGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTC 221894 | ||||| || || |||||||| |||||| |||| || | ||| || | | Sbjct 18618 ACAGCATGAACGGGTTACCAGTCTCAGTCTGAGCTTCCAGGATAGCATACCACAGCTTTT 18559 Query 221895 TGGCGCTCACCGTCCTCTTGACTGC-ACCCTCGGTCTTTTCATAC--CCGGTATAGAGCA 221951 ||| | | ||| | ||| | |||||| |||||||||| | ||| | || Sbjct 18558 GGGCTTTGAGAGTCAG-TCGACCACGACCCTC---CTTTTCATACTTCTCGTACAATGCC 18503 Query 221952 TGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGAC 222011 | | |||| || ||||| || |||| || || ||| ||| ||||| ||| Sbjct 18502 T--CGAACTCATCGCCGTAACAGTCAGCCAGACCAGGGCACTCATTGGGGCACATAAGAG 18445 Query 222012 TCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAA 222071 |||| | ||| | || || | || |||||| || || ||||||||||| ||| | | Sbjct 18444 TCCACTCGGCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCACAGAGCCAGGA 18385 Query 222072 AGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAA 222131 | ||||| | || || || || ||||| || || | ||||| | ||||||| Sbjct 18384 AAAGATCACGGGCACGGACTTCTTCTTTGCCGTGATTCTTGCGGAGATCGAGGAACTCAA 18325 Query 222132 AAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCAC 222191 ||| || |||||||||||||| || |||| || | ||| || || ||||||||||||| Sbjct 18324 AAACATCCGCGTGCCACGGCTCGAGGTAGATAGCAAAAGCACCAGGACGCTTGTTGCCAC 18265 Query 222192 CCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTG 222250 |||| | || | | ||| | |||||| | || || | || || | ||||| Sbjct 18264 CCTGGT-CAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATAGGAACGATACCGTTC 18206 Query 222251 GATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTG-GCA--GAC 222307 || |||||| ||||| |||||| | ||| ||| | | | | | ||| | Sbjct 18205 GAGGTACCGTTAGTGCCGGCAATGTAAGAACCAGTGGCAC---GAATGCGGTGCACGTTC 18149 Query 222308 ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATG 222367 | ||| |||||||| || || |||||||| ||||| | || |||||||| ||| Sbjct 18148 AGGCCAATACCACCCGCCATCTTGGAGATCATAGCGCAAGTTTTCAGAGTGTCATAGATA 18089 Query 222368 CCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTG 222427 ||||| || ||| ||||| | | || || || || || |||| || | | || Sbjct 18088 CCCTCAATGCTGTCATCCTTCATATCCACGAGGAAGCACGAAGACAGTTGCGCCTGGGGA 18029 Query 222428 GAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCG 222487 | || |||||| || || || || || || || ||| | || ||||| || | | Sbjct 18028 GTACCGGCGTTGAAAAGAGTTGGGGATGCATGAGTGAAGAACTTGCTCGACATGAGGTTG 17969 Query 222488 TACGTCTCTACGAC 222501 || ||||| | ||| Sbjct 17968 TAGGTCTCCAGGAC 17955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928830205526080