Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq85 217 3e-51
seq54 174 3e-38
>seq85
Length=66049
Score = 217 bits (240), Expect = 3e-51
Identities = 570/863 (66%), Gaps = 28/863 (3%)
Strand=Plus/Plus
Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533
|| || ||| | |||||||||||||| | || |||||||||||| |||||||||
Sbjct 2654 GAGATCTGGCAAATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCCGAGGAGATTGAT 2713
Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCT-ATC--CAAAGACGAGCAGCATTTTCTC 25590
||| ||||||| | ||| |||| || | || ||||||||||||| ||| ||
Sbjct 2714 CTGTCCAAGGATCTCCACGACTGGAACAACCGCATGAACAAAGACGAGCAGTTCTTTATC 2773
Query 25591 AAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAG 25650
|| | |||| |||||||| |||||||| ||||| || |||||||| || |||
Sbjct 2774 TCCCACATCCTGGCTTTCTTTGCCGCCTCTGACGGTATCGTCAACGAGAACTTGGTTGAG 2833
Query 25651 AGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCC 25710
| ||| || || || ||| |||||| || || || |||||||||||
Sbjct 2834 CGTTTCTCCGCCGAGGTCCAGATTCCCGAGGCCCGCTGCTTTTATGGTTTCCAGATCATG 2893
Query 25711 ATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCT-GATGACGTACATTACAGACGT 25769
|| ||||| | ||||| ||| || | ||| | ||| || ||||| | ||
Sbjct 2894 ATGGAAAACATTCACTCCGAGACCTACTCGCTGCTCATTGAT-ACCTACATCAAGGAGCC 2952
Query 25770 CGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829
|||| || | ||||| ||||| || || ||| |||| | |||||
Sbjct 2953 CGCCCAGCGTTCCTACCTGTTCAACGCCATTGATACTATTCCCTGCATTCGCCGCAAGGC 3012
Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889
|||||| ||||||||||| | | || |||| |||| | |||| || || ||
Sbjct 3013 TGACTGGGCCCTGAAGTGGATCGCCGACAAGGAGTCTACCTTTGCCCAGCGTCTCGTTGC 3072
Query 25890 CTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCT--- 25946
|||||| ||||| ||||| ||||| ||| ||| | ||||| |||||||||||||
Sbjct 3073 CTTTGCCGCTGTCGAGGGTATCTTCTTCTCGGGTGCTTTTGCCTCCATCTTCTGGCTGCG 3132
Query 25947 CAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACG 26005
||||| | || | |||||| || ||| ||| ||||||||||| ||| | | || |
Sbjct 3133 CAAGC----GTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTGATCTCCCGTGATG 3188
Query 26006 AGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAA--ACC 26063
|||| || |||| || ||||| |||||||||||| | |||| || |||| ||
Sbjct 3189 AGGGCCTTCACACTGACTTTGCTTGCCTGCTCTACTC---CCAC---CTTAACAACCGCC 3242
Query 26064 TTCTCAAGAGACCG-TCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTC 26122
|||| || | | | ||||||| || ||||| | || |||||||||||
Sbjct 3243 CCAGCAAGCAACTGATTGAGGACATCATCACCGATGCTGTTGCTATTGAGAAGGAGTTCT 3302
Query 26123 NNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACA 26182
| ||||||||| | ||||||| ||||
Sbjct 3303 TGACTGAGGCCCTGCCCTGTGCCCTGCTTGGCATGAACGCCGACCTCATGAAGACCTACA 3362
Query 26183 TTGAGTATGTGGCCGACCATCTGCTG-TGCCAGCTGGGACTCGCCAGACTCTACAGTACG 26241
|||| | ||| ||||||| ||| ||| || | || || || || |||||| | |
Sbjct 3363 TTGAATTTGTCGCCGACCGTCTCCTGATGGC-CCTCGGCAACGACAAGGTCTACA--AGG 3419
Query 26242 CC--TAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTG 26299
|| ||||| || ||||||||||| ||||| ||| | | || |||||||||||||| |
Sbjct 3420 CCAGCAACCCCTTTGACTTTATGGAGAACATCTCGCTTGGTGGCAAGACCAACTTCTTCG 3479
Query 26300 AAAAGAGGGTCGGCGACTATCAA 26322
| ||| | |||| |||||| |||
Sbjct 3480 AGAAGCGTGTCGCCGACTACCAA 3502
>seq54
Length=76171
Score = 174 bits (192), Expect = 3e-38
Identities = 705/1094 (64%), Gaps = 39/1094 (4%)
Strand=Plus/Minus
Query 221420 AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAA 221479
|| ||||||||||| |||||||| ||||| ||||||| |||||| | ||
Sbjct 19021 AGAGCAGCGTGGTAAATGGTCTCGAAGATATGAGTGTTGAGCTGGCGGGCCTCAGCCGAC 18962
Query 221480 GTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATG 221539
|||||||| ||||| | | ||| ||||||| || ||||| || |||| |||||||
Sbjct 18961 TCAAAGGGCATGCGCAGAGCCAGGAAGGCGTCGGCAAGACCCTGAACACCGACACCGATG 18902
Query 221540 GGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATC 221599
|| | ||| | | ||||| ||||| | || || || |||||| |||||
Sbjct 18901 GGACGGTGACGCATGTTGCTGTTATATGCTTCAGTAACAGGGTAGTGGTTGACATCGATG 18842
Query 221600 AGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAAC 221659
| ||| ||||| || | || || |||||| |||||| ||| || | ||
Sbjct 18841 ATGCGGTTCAGGTTGCGAACAACAACCTTGGTGACCTCGTGCAGCTTATGGAAATCGTAC 18782
Query 221660 ACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGG 221719
| | | | ||| || || | ||| || ||||| | || |||
Sbjct 18781 G---AGTTGTTG-----GTGTAG----TCAATAAAGGCAGGGAGGGCCAAAGAAGCAAGG 18734
Query 221720 TTACACACGGCCACCTCGTCCTTGTTG----GTATACTGTATGATCTCTGTACAGAGGTT 221775
|| || || || ||||| || | | |||| | || ||||| || || |||||
Sbjct 18733 TTGCAGACAGCAACCTCATCA--GGAGCACAGTATTCAATA--ATCTCAGTGCACAGGTT 18678
Query 221776 GCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-TCCTTGT 221834
| || ||| || ||||||| || || ||| |||||| ||| ||| | |||||||
Sbjct 18677 GGAGCTGCGGATAGTACCCAGGTTCTTCTGGTTACTCTTGCGGTTG-CAGTGGTCCTTGT 18619
Query 221835 AGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTC 221894
| ||||| || || |||||||| |||||| |||| || | ||| || | |
Sbjct 18618 ACAGCATGAACGGGTTACCAGTCTCAGTCTGAGCTTCCAGGATAGCATACCACAGCTTTT 18559
Query 221895 TGGCGCTCACCGTCCTCTTGACTGC-ACCCTCGGTCTTTTCATAC--CCGGTATAGAGCA 221951
||| | | ||| | ||| | |||||| |||||||||| | ||| | ||
Sbjct 18558 GGGCTTTGAGAGTCAG-TCGACCACGACCCTC---CTTTTCATACTTCTCGTACAATGCC 18503
Query 221952 TGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGAC 222011
| | |||| || ||||| || |||| || || ||| ||| ||||| |||
Sbjct 18502 T--CGAACTCATCGCCGTAACAGTCAGCCAGACCAGGGCACTCATTGGGGCACATAAGAG 18445
Query 222012 TCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAA 222071
|||| | ||| | || || | || |||||| || || ||||||||||| ||| | |
Sbjct 18444 TCCACTCGGCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCACAGAGCCAGGA 18385
Query 222072 AGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAA 222131
| ||||| | || || || || ||||| || || | ||||| | |||||||
Sbjct 18384 AAAGATCACGGGCACGGACTTCTTCTTTGCCGTGATTCTTGCGGAGATCGAGGAACTCAA 18325
Query 222132 AAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCAC 222191
||| || |||||||||||||| || |||| || | ||| || || |||||||||||||
Sbjct 18324 AAACATCCGCGTGCCACGGCTCGAGGTAGATAGCAAAAGCACCAGGACGCTTGTTGCCAC 18265
Query 222192 CCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTG 222250
|||| | || | | ||| | |||||| | || || | || || | |||||
Sbjct 18264 CCTGGT-CAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATAGGAACGATACCGTTC 18206
Query 222251 GATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTG-GCA--GAC 222307
|| |||||| ||||| |||||| | ||| ||| | | | | | ||| |
Sbjct 18205 GAGGTACCGTTAGTGCCGGCAATGTAAGAACCAGTGGCAC---GAATGCGGTGCACGTTC 18149
Query 222308 ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATG 222367
| ||| |||||||| || || |||||||| ||||| | || |||||||| |||
Sbjct 18148 AGGCCAATACCACCCGCCATCTTGGAGATCATAGCGCAAGTTTTCAGAGTGTCATAGATA 18089
Query 222368 CCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTG 222427
||||| || ||| ||||| | | || || || || || |||| || | | ||
Sbjct 18088 CCCTCAATGCTGTCATCCTTCATATCCACGAGGAAGCACGAAGACAGTTGCGCCTGGGGA 18029
Query 222428 GAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCG 222487
| || |||||| || || || || || || || ||| | || ||||| || | |
Sbjct 18028 GTACCGGCGTTGAAAAGAGTTGGGGATGCATGAGTGAAGAACTTGCTCGACATGAGGTTG 17969
Query 222488 TACGTCTCTACGAC 222501
|| ||||| | |||
Sbjct 17968 TAGGTCTCCAGGAC 17955
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928830205526080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |