Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq54 149 7e-31 seq368 129 7e-25 seq85 107 2e-18 >seq54 Length=76171 Score = 149 bits (164), Expect = 7e-31 Identities = 932/1475 (63%), Gaps = 59/1475 (4%) Strand=Plus/Plus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTCGATGGCATCCTCATG 75205 ||||||||| |||| || |||||| || || | ||| || |||| || | Sbjct 17832 TACTTTGGTTTCAAGACGCTTGAGCGTTCATACCTCCTGAAGCTTGACGGCAAGATCGTC 17891 Query 75206 GAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGAT 75265 || || || ||||| ||||||| || || | || ||| || || || |||| Sbjct 17892 GAGCGTCCTCAACACATGATCATGCGTGTTGCTGTTGGAATCTGGGGTGATGATGTTGAA 17951 Query 75266 TCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAA 75323 |||| ||||||| ||| || ||||| |||| | | ||| ||| ||| | |||| Sbjct 17952 CGTGTCCTGGAGACCTACAACCTCATGTCGAGCAAGTTCT--TCACTCATGCATCCCCAA 18009 Query 75324 CCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACA 75383 | || ||||| || ||||| || |||| |||| |||||||| | | | | Sbjct 18010 CTCTTTTCAACGCCGGTACTCCCCAGGCGCAACTGTCTTCGTGCTTCCTCGTGGATATGA 18069 Query 75384 AGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAAA 75441 |||| ||| || | |||||||||| ||||| | | | ||||| | ||||| || Sbjct 18070 AGGATGACAGCATTGAGGGTATCTATGACACTCTGAAA-ACT-TGCGCTATGATCTCCAA 18127 Query 75442 GTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCG 75501 | ||| || |||||||| || || | || | | |||| | ||| ||| Sbjct 18128 GATGGCGGGTGGTATTGGCCTGAACGTGCACCGCATTCGTGCCACTGGTTCTTACATTGC 18187 Query 75502 GGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGC 75561 || || || ||| || | ||||| |||| ||||| || || || ||| ||| || Sbjct 18188 CGGCACTAACGGTACCTCGAACGGTATCGTTCCTATGCTGCGTGTGTTCAACAACACTGC 18247 Query 75562 GCGCTATGTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGA 75615 || || || | || | || ||||| || | | || ||||| | || Sbjct 18248 TCGTTACGTTGACCAGGGTGGCAACAAGCGTCCT---GGTGCTTTTGCTATCTACCTCGA 18304 Query 75616 ACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGA 75675 || ||||| || ||| | | |||||||| || | || || || || | ||||| Sbjct 18305 GCCGTGGCACGCGGATGTTTTTGAGTTCCTCGATCTCCGCAAGAATCACGGCAAAGAAGA 18364 Query 75676 GGCTCGGTGTA-GAGATCTCTTTTCAT--CCCTGTGGATTCCAGACCTTTTCATGAAGCG 75732 | || ||| | ||||| |||| | | |||||||| || || |||||||||||||| Sbjct 18365 AG-TCCGTGCCCGTGATCT--TTTCCTGGCTCTGTGGATCCCTGATCTTTTCATGAAGCG 18421 Query 75733 GGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGA 75792 ||||| || | | ||| ||||| | || || | || || ||||| | || Sbjct 18422 TGTTGAAAAGAACGCCGAGTGGACTCTTATGTGCCCCAATGAGTGCCCTGGTCTGGCTGA 18481 Query 75793 CGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAG--CC 75850 | || || ||||| || || | ||| ||||||||| |||||||| | | | Sbjct 18482 CTGTTACGGCGATGAGTTCGAGGCATTGTACGAGAAGTATGAAAAGGAGGGTCGTGGTCG 18541 Query 75851 AATGCGACTGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACT 75910 | || ||| | |||| | | ||| | ||||| || || | ||||| |||||| Sbjct 18542 ACTG--ACTCTCAAAGCCCAAAAGCTGTGGTATGCTATCCTGGAAGCTCAGACTGAGACT 18599 Query 75911 GGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTG 75970 || | || | ||||| |||||||| || ||| ||||||||||| ||||| || Sbjct 18600 GGTAACCCGTTCATGCTGTACAAGGACCACTGCAACCGCAAGAGTAACCAGAAGAACCTG 18659 Query 75971 GGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAG 76030 || || ||| ||||| || || ||||| || ||| | || ||| | | |||||| Sbjct 18660 GGTACTATCCGCAGCTCCAACCTGTGCACTGAGATTATTGAATACTGTGCTCCTGATGAG 18719 Query 76031 ACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGC 76090 ||||| ||||| | || || | ||||| || | | | ||| | || | Sbjct 18720 GTTGCTGTCTGCAACCTTGCTTCTTTGGCCCTCCCTGCCT---TTATTGACTACACCAAC 18776 Query 76091 A---CTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAAC 76147 | | | |||| | || || || || |||| ||| ||||| || || ||| Sbjct 18777 AACTCGTACGATTTCCATAAGCTGCACGAGGTCACCAAGGTTGTTGTTCGCAACCTGAAC 18836 Query 76148 CGAGTCATTGACAGAAATTTTTATCCCGTTGAGACT---GCGCGAAAGTCTAATATGCGA 76204 || |||| || || || || ||| ||| || || || ||||| Sbjct 18837 CGCATCATCGATGTCAACCACTACCCTGTT---ACTGAAGCATATAACAGCAACATGCGT 18893 Query 76205 CACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTAC 76264 ||| | || || ||| | |||||||| ||||| || || | || || | || | Sbjct 18894 CACCGTCCCATCGGTGTCGGTGTTCAGGGTCTTGCCGACG-----CCTTCCTGGCTCTGC 18948 Query 76265 GCA-----TTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGT 76319 ||| ||||| || | ||| ||| || | || ||| |||||| || ||||| | Sbjct 18949 GCATGCCCTTTGAGTCGGCTGAGGCCCGCCAGCTCAACACTCATATCTTCGAGACCATTT 19008 Query 76320 ATCACGCATCCCTGGAGGCGAGTTGTGA-ATTG-GCTGAAGCCCAAGGTTCCTATGAGAC 76377 | ||||| | || ||||| || || |||| | |||| | || || ||| Sbjct 19009 ACCACGCTGCTCTTGAGGCCTCGTGCGAGATTGCTCAGAAG--GAGGGCAAGTACTCGAC 19066 Query 76378 ATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAAC 76437 | ||||| || || | |||||| || | || |||||||| |||| |||| || | | Sbjct 19067 CTACGAGGGCTCGCCTGTGTCCCAGGGCATCCTGCAGTTTGACATGT-GGAATGTCACTC 19125 Query 76438 CAAG-CTCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTA 76496 | || | || |||||| || ||||||| |||||| || | ||| | || | Sbjct 19126 CCAGTGACCTCTGGGACTGGACCTCACTGAAGGAACAGATCAAGCAGCACGGTATCCGCA 19185 Query 76497 ACAGTCTTT--TGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAA 76554 || ||||| | | || || ||||| || ||| || | || || |||| ||||| Sbjct 19186 AC--TCTTTACTACTTGCGCCCATGCCCACCGCCAGTACTTCCCAGATTCTGGGCAATAA 19243 Query 76555 TGAATGCTTTGAACCATACACAACAAACATCTACC 76589 |||||||| || || ||||| | ||||| |||| Sbjct 19244 CGAATGCTTCGAGCCCTACACCTCCAACATTTACC 19278 >seq368 Length=24549 Score = 129 bits (142), Expect = 7e-25 Identities = 216/310 (70%), Gaps = 2/310 (1%) Strand=Plus/Plus Query 175192 GATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTGTGGATTTTCTCAAG 175251 ||||| | || || |||| ||||| | || || ||| ||||| | || |||||| Sbjct 8378 GATGTGGCCGGTATGGACGAGGCCAAGGTGGAGATTATGGAGTTTGTGCAATTCCTCAAG 8437 Query 175252 CAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGT 175311 | ||||| | | | | | ||||||||||||||| || || ||| | ||| |||| Sbjct 8438 AAGCCCGAAAAGTTTGTCCGTCTTGGTGCCAAGATCCCGCGTGGTGCCATCCTCTCGGGA 8497 Query 175312 AAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCA 175371 ||| |||||||||||||| || || ||| |||| ||||| || || || || Sbjct 8498 CCGCCCGGTACGGGAAAGACGCTGCTGGCCAAGGCCACGGCGGGCGAGTCCGGAGTTCCG 8557 Query 175372 TTCATCCAGTG-CTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAG 175430 || | ||||| ||||| | | ||||||||||||||||||||||| || | | Sbjct 8558 TT-TTTCAGTGTCTCTGGTTCGGAGTTTGTGGAGATGTTTGTTGGTGTCGGGCCGTCGCG 8616 Query 175431 GGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGA 175490 || || || | |||| | || || ||||| || |||||| |||| |||||||| Sbjct 8617 TGTGCGTGACTTGTTTGCGACAGCGCGGAAAAATGCGCCGTGTATTATCTTTATTGATGA 8676 Query 175491 GATTGATGCG 175500 |||||||||| Sbjct 8677 GATTGATGCG 8686 >seq85 Length=66049 Score = 107 bits (118), Expect = 2e-18 Identities = 335/505 (66%), Gaps = 28/505 (6%) Strand=Plus/Plus Query 65026 AAGGCGAAATGGGCAATGAAATGGTTTGAC-ACAA--AGTCTCGCTCCTTCGCCGAGCGC 65082 ||||| | ||||| |||| ||| | | | |||| ||||| |||| ||| |||| Sbjct 3008 AAGGCTGACTGGGCCCTGAAGTGGATCGCCGACAAGGAGTCTA---CCTTTGCCCAGCGT 3064 Query 65083 CTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTG-CGCTATTTA 65141 || |||| ||||| ||| |||||||||||||||| ||||| || || | | || | Sbjct 3065 CTCGTTGCCTTTGCCGCTGTCGAGGGTATCTTCTTCT-CGGGTGCTTTTGCCTCCATCTT 3123 Query 65142 TTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCG 65201 ||| || ||||| ||||||||||| || || |||||| || || || || ||||| Sbjct 3124 CTGGCTGCGCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTGATCTCCCG 3183 Query 65202 AGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCT--TCAAGACTTTGCGTAATAGA 65259 |||||||| || ||| || ||||| ||||| || ||| | || | Sbjct 3184 TGATGAGGGCCTTCACACTGACTTTGCTTGCCTGCTCTACTCCCACCTTAAC--AACCGC 3241 Query 65260 CCCACTACCGAAACT-ATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGGTT 65318 |||| | | |||| || | | |||| | | || || |||| |||||||| | ||| Sbjct 3242 CCCAGCA-AGCAACTGATTGAGGACATCATCACCGATGCTGTTGCTATTGAGAAGGAGTT 3300 Query 65319 CATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGA---GAAGATGTCCGA 65375 | | || || || || ||| || | || |||||| | || | || | || Sbjct 3301 CTTGACTGAGGCCCTGCCCTGTGCCCTGCTTGGCATGAACGCCGACCTCATGAAGACC-- 3358 Query 65376 GTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCCAC-CCA---TTT 65431 |||||||| | ||| | || |||||||| | | | || || || | | Sbjct 3359 -TACATTGAATTTGTCGCCGACCGTCTCCTGATGGCCCTCG----GCAACGACAAGGTCT 3413 Query 65432 GGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACT 65491 || || | || || |||||||||||||| ||||| |||| ||| |||||||||| Sbjct 3414 ACAAGGCCAGCAACCCCTTTGACTTTATGGAGAACATCTCGCTTGGTGGCAAGACCAACT 3473 Query 65492 TCTTTGAGAAGCGAGTTGGGGACTA 65516 |||| |||||||| || | ||||| Sbjct 3474 TCTTCGAGAAGCGTGTCGCCGACTA 3498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596560226400160