Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq54 156 1e-32
seq188 131 5e-25
seq85 120 9e-22
seq499 84.2 6e-11
>seq54
Length=76171
Score = 156 bits (172), Expect = 1e-32
Identities = 570/879 (65%), Gaps = 15/879 (2%)
Strand=Plus/Minus
Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689
|||||| | ||||||| ||||||||| || || ||| || || | |||||||||||
Sbjct 18704 GTATTCAATAATCTCAGTGCACAGGTTGGAGCTGCGGATAGTACCCAGGTTCTTCTGGTT 18645
Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749
| || | ||| || |||||||| || ||| | ||| | || ||||| |||| ||
Sbjct 18644 ACTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAACGGGTTACCAGTCTCAGTCTGAGC 18585
Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTG-CCTTCCG 155808
||||| || ||| || | |||| || | | || | | || |||
Sbjct 18584 TTCCAGGATAGCATACCACAGCTTTTGGGCTTTGAGAGTCA-GTCGACCACGACCCTCCT 18526
Query 155809 ACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGC 155868
||||| ||| |||| | | | || || |||||||| ||| ||| |||||||
Sbjct 18525 TTTCATACTTCTCGTACAATGCCTCGAACTCATCGCCGTAACAGTCAGCCAGACCAGGGC 18466
Query 155869 ACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATT--ACACGCTCCATAAATAC 155926
||| || |||||| | || | ||| || | || ||||||| ||| || |
Sbjct 18465 ACTCATTGGGGCACATAAGAGTCCACTCGGCGTT--CTTTTCAACACGCTTCATGAAAAG 18408
Query 155927 ATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCT-CATCGCCGTGAT 155985
|||| ||| | ||| |||||| || | || |||| || | | ||||||||
Sbjct 18407 ATCAGGGATCCACAGAGCCAGGAAAAGATCACGGGCACG-GACTTCTTCTTTGCCGTGAT 18349
Query 155986 TCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAA 156045
|||| || || || | ||| || || ||| | || ||||| || || |||||||
Sbjct 18348 TCTTGCGGAGATCGAGGAACTCAAAAACATCCGCGTGCCACGGCTCGAGGTAGATAGCAA 18289
Query 156046 AACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACAC 156102
|| |||| | |||| |||||||| || || || |||||||| || ||||| ||||
Sbjct 18288 AAGCACCAGGACGCTTGTTGCCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACAC 18229
Query 156103 CTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATG 156162
|||||||||| ||||| || || || || || || ||| ||| | ||||||| |
Sbjct 18228 GCAGCATAGGAACGATACCGTTCGAGGTACCGTTAGTGCCGGCAATGTAAGAACCAGTGG 18169
Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCAT 156221
|||| || | | || ||||||||||| | |||| || || || ||||||
Sbjct 18168 CACGAATGCGGTGCACGTTCAGGCCAATACCACCCG-CCATCTTGGAGATCATAGCGCAA 18110
Query 156222 TCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCAC 156281
|| | ||| | | ||||| ||||| ||||| | ||| | || |||||
Sbjct 18109 GTTTTCAGAGTGTCATAGATACCCTCAATGCTGTCATCCTTCATATCCACGAGGAAGCAC 18050
Query 156282 GAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAA 156341
||| | ||| | | || || || |||||||| || || || | ||||||| | ||
Sbjct 18049 GAAGACAGTTGCGCCTGGGGAGTACCGGCGTTGAAAAGAGTTGGGGATGCATGAGTGAAG 17990
Query 156342 TACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTA-GACCCGTGAAT 156400
|||| | ||||| | ||| |||||| | |||| || | |||| || |
Sbjct 17989 AACTTGCTCGACATGAGGTTGTAGGTCTCCAGGACACGTTCAACATCATCACCCCAGATT 17930
Query 156401 ACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCG 156460
|| | || || | ||| ||| || ||||||||||| || ||| || ||||
Sbjct 17929 CCA-ACAGCAACACGCATGATCATGTGTTGAGGACGCTCGACGATCTTGCCGTCAAGCTT 17871
Query 156461 CAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499
||| ||||||| || || || || || || || || ||
Sbjct 17870 CAGGAGGTATGAACGCTCAAGCGTCTTGAAACCAAAGTA 17832
>seq188
Length=42393
Score = 131 bits (144), Expect = 5e-25
Identities = 192/272 (71%), Gaps = 0/272 (0%)
Strand=Plus/Minus
Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631
||||||| ||||| | |||||||||||| ||||| || | || || |||||
Sbjct 33162 TCTTCCAGGGCCTTGACCAGACGACGCTGAATGTAACCGGTCTCGGCGGTCTTGACAGCA 33103
Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGC 302691
|||||||| ||||| |||||||| |||| ||||||||||| | || || |
Sbjct 33102 GTATCAATGAGACCTTCACGACCAGCCATGGCATGGAAGAAGAATTCACTAGGAGTCAAA 33043
Query 302692 CCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTA 302751
|| | | | | ||| | || ||||||||||| | |||||| || | ||| ||||||
Sbjct 33042 CCACGCAGATACGAGTTTTCGACGAAACCACGAGACTCGGGAGAGTAATCGTCCTTGGTG 32983
Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811
||||| || || || | || || ||||| | ||||||||||| || ||||| | |||
Sbjct 32982 AAGTGGGGAAGAGTACGGTACTTGAAGCCGAAAGGGATACGCTTACCCTCAACAATTTGC 32923
Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATT 302843
|| || | | | | ||||||| ||||| ||
Sbjct 32922 TGACCGACCAAGGCAGTCATCTGAGAAATGTT 32891
>seq85
Length=66049
Score = 120 bits (132), Expect = 9e-22
Identities = 240/353 (68%), Gaps = 2/353 (1%)
Strand=Plus/Plus
Query 133305 CCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACAT 133364
|||| ||||| ||||||||| | ||||| ||||||||| || || || || |
Sbjct 2859 CCGAGGCCCGCTGCTTTTATGGTTTCCAGATCATGATGGAAAACATTCACTCCGAGACCT 2918
Query 133365 ATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACG 133424
| || || |||||||| |||||||| || ||| |||| | | || |||||||
Sbjct 2919 ACTCGCTGCTCATTGATACCTACATCAAGGAGCCCGCCCAGCGTTCCTACCTGTTCAACG 2978
Query 133425 CCATTAGCGAAT-TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAG 133483
||||| | | | |||| || ||| || |||||||||| | || ||||||
Sbjct 2979 CCATT-GATACTATTCCCTGCATTCGCCGCAAGGCTGACTGGGCCCTGAAGTGGATCGCC 3037
Query 133484 GACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAttttt 133543
|||||| | | ||||| ||||||||||| ||||| | || ||||| || ||
Sbjct 3038 GACAAGGAGTCTACCTTTGCCCAGCGTCTCGTTGCCTTTGCCGCTGTCGAGGGTATCTTC 3097
Query 133544 ttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTG 133603
||| ||||| || ||| || || ||||| ||||||||| | | ||||| |||
Sbjct 3098 TTCTCGGGTGCTTTTGCCTCCATCTTCTGGCTGCGCAAGCGTGGTCTCATGCCTGGTCTG 3157
Query 133604 TGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656
|| || ||||| || || || | || |||| |||||||| || |||||
Sbjct 3158 ACCTTCTCCAACGAGCTGATCTCCCGTGATGAGGGCCTTCACACTGACTTTGC 3210
>seq499
Length=17841
Score = 84.2 bits (92), Expect = 6e-11
Identities = 121/168 (72%), Gaps = 2/168 (1%)
Strand=Plus/Plus
Query 251821 AAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATG 251880
||||| ||| ||| ||||| || ||||||||| ||||| || || || || ||
Sbjct 768 AAAAGACACTCAATCAAATGGGCAATGGTCATACGAGACGGAATGGCGTGAGGGTTAATA 827
Query 251881 ATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTT 251939
||||| ||||| | | || || ||| ||||||||||||| || || || ||
Sbjct 828 ATGATATCGGGAGTGATGCCCTCGCGAGTAAAGGGCATATCCTCTT-GTCTGTAGGTGAC 886
Query 251940 TCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987
|||||||| || ||||| ||||| |||||| ||||| ||||||||
Sbjct 887 ACCAATAGTACCTTTTTGACCGTGGCGAGAAGCAAACTTGTCACCAAT 934
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471793895917609
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |