Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq54 156 1e-32 seq188 131 5e-25 seq85 120 9e-22 seq499 84.2 6e-11 >seq54 Length=76171 Score = 156 bits (172), Expect = 1e-32 Identities = 570/879 (65%), Gaps = 15/879 (2%) Strand=Plus/Minus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 |||||| | ||||||| ||||||||| || || ||| || || | ||||||||||| Sbjct 18704 GTATTCAATAATCTCAGTGCACAGGTTGGAGCTGCGGATAGTACCCAGGTTCTTCTGGTT 18645 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 | || | ||| || |||||||| || ||| | ||| | || ||||| |||| || Sbjct 18644 ACTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAACGGGTTACCAGTCTCAGTCTGAGC 18585 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTG-CCTTCCG 155808 ||||| || ||| || | |||| || | | || | | || ||| Sbjct 18584 TTCCAGGATAGCATACCACAGCTTTTGGGCTTTGAGAGTCA-GTCGACCACGACCCTCCT 18526 Query 155809 ACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGC 155868 ||||| ||| |||| | | | || || |||||||| ||| ||| ||||||| Sbjct 18525 TTTCATACTTCTCGTACAATGCCTCGAACTCATCGCCGTAACAGTCAGCCAGACCAGGGC 18466 Query 155869 ACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATT--ACACGCTCCATAAATAC 155926 ||| || |||||| | || | ||| || | || ||||||| ||| || | Sbjct 18465 ACTCATTGGGGCACATAAGAGTCCACTCGGCGTT--CTTTTCAACACGCTTCATGAAAAG 18408 Query 155927 ATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCT-CATCGCCGTGAT 155985 |||| ||| | ||| |||||| || | || |||| || | | |||||||| Sbjct 18407 ATCAGGGATCCACAGAGCCAGGAAAAGATCACGGGCACG-GACTTCTTCTTTGCCGTGAT 18349 Query 155986 TCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAA 156045 |||| || || || | ||| || || ||| | || ||||| || || ||||||| Sbjct 18348 TCTTGCGGAGATCGAGGAACTCAAAAACATCCGCGTGCCACGGCTCGAGGTAGATAGCAA 18289 Query 156046 AACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACAC 156102 || |||| | |||| |||||||| || || || |||||||| || ||||| |||| Sbjct 18288 AAGCACCAGGACGCTTGTTGCCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACAC 18229 Query 156103 CTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATG 156162 |||||||||| ||||| || || || || || || ||| ||| | ||||||| | Sbjct 18228 GCAGCATAGGAACGATACCGTTCGAGGTACCGTTAGTGCCGGCAATGTAAGAACCAGTGG 18169 Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCAT 156221 |||| || | | || ||||||||||| | |||| || || || |||||| Sbjct 18168 CACGAATGCGGTGCACGTTCAGGCCAATACCACCCG-CCATCTTGGAGATCATAGCGCAA 18110 Query 156222 TCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCAC 156281 || | ||| | | ||||| ||||| ||||| | ||| | || ||||| Sbjct 18109 GTTTTCAGAGTGTCATAGATACCCTCAATGCTGTCATCCTTCATATCCACGAGGAAGCAC 18050 Query 156282 GAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAA 156341 ||| | ||| | | || || || |||||||| || || || | ||||||| | || Sbjct 18049 GAAGACAGTTGCGCCTGGGGAGTACCGGCGTTGAAAAGAGTTGGGGATGCATGAGTGAAG 17990 Query 156342 TACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTA-GACCCGTGAAT 156400 |||| | ||||| | ||| |||||| | |||| || | |||| || | Sbjct 17989 AACTTGCTCGACATGAGGTTGTAGGTCTCCAGGACACGTTCAACATCATCACCCCAGATT 17930 Query 156401 ACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCG 156460 || | || || | ||| ||| || ||||||||||| || ||| || |||| Sbjct 17929 CCA-ACAGCAACACGCATGATCATGTGTTGAGGACGCTCGACGATCTTGCCGTCAAGCTT 17871 Query 156461 CAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 ||| ||||||| || || || || || || || || || Sbjct 17870 CAGGAGGTATGAACGCTCAAGCGTCTTGAAACCAAAGTA 17832 >seq188 Length=42393 Score = 131 bits (144), Expect = 5e-25 Identities = 192/272 (71%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 ||||||| ||||| | |||||||||||| ||||| || | || || ||||| Sbjct 33162 TCTTCCAGGGCCTTGACCAGACGACGCTGAATGTAACCGGTCTCGGCGGTCTTGACAGCA 33103 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGC 302691 |||||||| ||||| |||||||| |||| ||||||||||| | || || | Sbjct 33102 GTATCAATGAGACCTTCACGACCAGCCATGGCATGGAAGAAGAATTCACTAGGAGTCAAA 33043 Query 302692 CCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTA 302751 || | | | | ||| | || ||||||||||| | |||||| || | ||| |||||| Sbjct 33042 CCACGCAGATACGAGTTTTCGACGAAACCACGAGACTCGGGAGAGTAATCGTCCTTGGTG 32983 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 ||||| || || || | || || ||||| | ||||||||||| || ||||| | ||| Sbjct 32982 AAGTGGGGAAGAGTACGGTACTTGAAGCCGAAAGGGATACGCTTACCCTCAACAATTTGC 32923 Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 || || | | | | ||||||| ||||| || Sbjct 32922 TGACCGACCAAGGCAGTCATCTGAGAAATGTT 32891 >seq85 Length=66049 Score = 120 bits (132), Expect = 9e-22 Identities = 240/353 (68%), Gaps = 2/353 (1%) Strand=Plus/Plus Query 133305 CCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACAT 133364 |||| ||||| ||||||||| | ||||| ||||||||| || || || || | Sbjct 2859 CCGAGGCCCGCTGCTTTTATGGTTTCCAGATCATGATGGAAAACATTCACTCCGAGACCT 2918 Query 133365 ATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACG 133424 | || || |||||||| |||||||| || ||| |||| | | || ||||||| Sbjct 2919 ACTCGCTGCTCATTGATACCTACATCAAGGAGCCCGCCCAGCGTTCCTACCTGTTCAACG 2978 Query 133425 CCATTAGCGAAT-TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAG 133483 ||||| | | | |||| || ||| || |||||||||| | || |||||| Sbjct 2979 CCATT-GATACTATTCCCTGCATTCGCCGCAAGGCTGACTGGGCCCTGAAGTGGATCGCC 3037 Query 133484 GACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAttttt 133543 |||||| | | ||||| ||||||||||| ||||| | || ||||| || || Sbjct 3038 GACAAGGAGTCTACCTTTGCCCAGCGTCTCGTTGCCTTTGCCGCTGTCGAGGGTATCTTC 3097 Query 133544 ttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTG 133603 ||| ||||| || ||| || || ||||| ||||||||| | | ||||| ||| Sbjct 3098 TTCTCGGGTGCTTTTGCCTCCATCTTCTGGCTGCGCAAGCGTGGTCTCATGCCTGGTCTG 3157 Query 133604 TGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656 || || ||||| || || || | || |||| |||||||| || ||||| Sbjct 3158 ACCTTCTCCAACGAGCTGATCTCCCGTGATGAGGGCCTTCACACTGACTTTGC 3210 >seq499 Length=17841 Score = 84.2 bits (92), Expect = 6e-11 Identities = 121/168 (72%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 251821 AAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATG 251880 ||||| ||| ||| ||||| || ||||||||| ||||| || || || || || Sbjct 768 AAAAGACACTCAATCAAATGGGCAATGGTCATACGAGACGGAATGGCGTGAGGGTTAATA 827 Query 251881 ATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTT 251939 ||||| ||||| | | || || ||| ||||||||||||| || || || || Sbjct 828 ATGATATCGGGAGTGATGCCCTCGCGAGTAAAGGGCATATCCTCTT-GTCTGTAGGTGAC 886 Query 251940 TCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 |||||||| || ||||| ||||| |||||| ||||| |||||||| Sbjct 887 ACCAATAGTACCTTTTTGACCGTGGCGAGAAGCAAACTTGTCACCAAT 934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471793895917609