Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq687 178 2e-38
seq54 140 4e-27
seq60 127 2e-23
seq85 125 9e-23
seq184 107 2e-17
>seq687
Length=9991
Score = 178 bits (196), Expect = 2e-38
Identities = 277/396 (70%), Gaps = 10/396 (3%)
Strand=Plus/Plus
Query 18097 TTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATG 18156
|| || ||||| ||||| || ||||||||||||||||||| | || || | |
Sbjct 5580 TTCGGTGAGTCCCACGGCAAGGCCGTCGGCTGCATCATCGACAACCCACCCCCAGGTCTC 5639
Query 18157 CCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCA 18216
| || |||| ||||||||||| || || | || ||||| || ||||| |||
Sbjct 5640 TCCCTCACCGAAGCCGACATCCAACCCCAACTCACCCGTCGCCGCCCCGGCCAATCCGCC 5699
Query 18217 CTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGC 18276
| |||| || ||||| || || ||||||| ||||| || ||| || ||||
Sbjct 5700 ATCACCACCCCTCGCAATGAAAAAGACCGCGTCACCATCCTCTCCGGCTGCGAATCCGGC 5759
Query 18277 CTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGAC 18336
| ||| || ||| | ||| | | | | ||| |||||| ||||| || ||| |||
Sbjct 5760 CGCACCCTTGGCACCCCCATTGCCATGACTGTCGCCAACGAAGACCAACGCCCCAAAGAC 5819
Query 18337 TATTCCGA--------CATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACA 18388
|| | || |||| |||| ||||| ||||| |||||||||| |||||||
Sbjct 5820 TA--CGGAAACAAAACCATGGACAAGTACCCGCGTCCCTCGCACGCCGACTTCACCTACC 5877
Query 18389 TGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCC 18448
|| || |||||||||||||| || || ||||| ||||| || || ||||||||||||
Sbjct 5878 AGGAAAAATACGGCATCAAGGCCTCCTCCGGCGGTGGCCGTTCATCCGCCCGCGAGACCA 5937
Query 18449 TCATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAAAT 18484
| || ||||||||||| || |||||||||||||
Sbjct 5938 TTGCCCGTGTCGCCGCCGGAGCCGTCGCCGAGAAAT 5973
Score = 95.1 bits (104), Expect = 1e-13
Identities = 109/147 (74%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 19052 CATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTG 19111
|| |||||| || || || || ||| ||||| || || | || || ||||||||
Sbjct 6212 CACCGGCGGTACCGTCACCTGTGTGATCCGCAATGTCCCTACCGGTCTAGGCGAGCCTGC 6271
Query 19112 CTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGG 19171
||||||||| | |||||| ||| ||||| |||||||| || || ||||| |||||
Sbjct 6272 CTTTGACAAACTAGAGGCCATGCTTGCCCATGCCATGCTATCTATTCCGGCATGCAAGGC 6331
Query 19172 ATTCGAGATTGGCAGCGGGTTTGCGGG 19198
|| ||||||||| |||||||||||
Sbjct 6332 CTTTGAGATTGGCTCAGGGTTTGCGGG 6358
>seq54
Length=76171
Score = 140 bits (154), Expect = 4e-27
Identities = 211/300 (70%), Gaps = 0/300 (0%)
Strand=Plus/Minus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
|||||| ||||| || || |||| ||| || || || ||||| || |||| ||||| ||
Sbjct 18263 CTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATAGGAACGATACCGTTCGA 18204
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
||||| ||||| || | ||| | || | ||| || | |||| || | |||
Sbjct 18203 GGTACCGTTAGTGCCGGCAATGTAAGAACCAGTGGCACGAATGCGGTGCACGTTCAGGCC 18144
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
|| || || ||| ||||||||| | ||||| ||| || ||||| ||||| |||||
Sbjct 18143 AATACCACCCGCCATCTTGGAGATCATAGCGCAAGTTTTCAGAGTGTCATAGATACCCTC 18084
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
|| ||| ||||||| |||||||| |||||||| || ||||| || | || ||
Sbjct 18083 AATGCTGTCATCCTTCATATCCACGAGGAAGCACGAAGACAGTTGCGCCTGGGGAGTACC 18024
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
||||||||| || || || | || ||||| |||| | ||||||| || ||||||
Sbjct 18023 GGCGTTGAAAAGAGTTGGGGATGCATGAGTGAAGAACTTGCTCGACATGAGGTTGTAGGT 17964
>seq60
Length=73589
Score = 127 bits (140), Expect = 2e-23
Identities = 93/108 (86%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
||| |||||||||| ||||||||||| || || || | || ||||| |||| ||||||
Sbjct 15923 GCCTCCAACTACCTTGACATCAAGCCCCTTCTGGACGTCGGTTGCAAAACTGTCGCCAAC 15864
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATC 1592293
||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 15863 ATGATCAAGGGCAAGTCTCCCGAGGAGATCCGCAAGACTTTCAACATC 15816
>seq85
Length=66049
Score = 125 bits (138), Expect = 9e-23
Identities = 218/315 (69%), Gaps = 3/315 (1%)
Strand=Plus/Minus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
||||| ||||| || || ||||||||| || |||||| | |||| | | |||
Sbjct 2910 GAGTGAATGTTTTCCATCATGATCTGGAAACCATAAAAGCAGCGGGCCTCGGGAATCTGG 2851
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
||||| ||| || | ||| ||||||| ||||| ||||| |||||| ||
Sbjct 2850 ACCTCGGCGGAGAAACGCTCAACCAAGTTCTCGTTGACGATACCGTCAGAGGCGGCAAAG 2791
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA-GCGACAC--CCAGTGG 869809
|||||||||| ||| ||||||| ||||||| | | | | ||| ||||| |
Sbjct 2790 AAAGCCAGGATGTGGGAGATAAAGAACTGCTCGTCTTTGTTCATGCGGTTGTTCCAGTCG 2731
Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869
| || | || || | ||||||||||||||||| || ||||||||||| |||
Sbjct 2730 TGGAGATCCTTGGACAGATCAATCTCCTCGGCGGTCCAGAAAGAAGCCTCGGCCTTCTTG 2671
Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCG 869929
||||| | ||| | | ||||| ||| |||||||| || |||||||| ||||| ||
Sbjct 2670 TACATTTGCCAGATCTCGTGGTACTTGATGGGGAAGAGCACGAAGCGGTTAGGGTTCTCC 2611
Query 869930 CGCAACAGGGGTTCG 869944
||| |||||||||
Sbjct 2610 TGCAGAAGGGGTTCG 2596
Score = 122 bits (134), Expect = 1e-21
Identities = 192/273 (70%), Gaps = 9/273 (3%)
Strand=Plus/Minus
Query 869194 GATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGAT 869253
||||| |||||| |||| || || |||||||| || ||||| ||||| |||||
Sbjct 3178 GATCAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGAT 3119
Query 869254 GGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTC 869313
|| | ||| |||||||| ||||| |||||||| ||||||||| | | ||| ||||
Sbjct 3118 GGAGGCAAAAGCACCCGAGAAGAAGATACCCTCGACAGCGGCAAAGGCAACGAGACGCTG 3059
Query 869314 GGCAAAGGTGTCGAGGCCCTCCTTGTTG---ATCCACTTCATCGCCCAGTCGGCCTTTTT 869370
||||||||| || |||||||| | |||||||||| |||||||| |||||
Sbjct 3058 GGCAAAGGTA--GA----CTCCTTGTCGGCGATCCACTTCAGGGCCCAGTCAGCCTTGCG 3005
Query 869371 CCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTT 869430
| | | || | || || |||||| || |||| | | ||| || |||||
Sbjct 3004 GCGAATGCAGGGAATAGTATCAATGGCGTTGAACAGGTAGGAACGCTGGGCGGGCTCCTT 2945
Query 869431 GACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463
|| ||||| || || || ||||| ||||||||
Sbjct 2944 GATGTAGGTATCAATGAGCAGCGAGTAGGTCTC 2912
Score = 113 bits (124), Expect = 6e-19
Identities = 170/242 (70%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| ||| | || ||| |||||| |||||||||||||| | ||||||||
Sbjct 3507 GCCTTTTGGTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGCGAGATG 3448
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | || |||||| | ||||||| ||| ||| ||||| | |
Sbjct 3447 TTCTCCATAAAGTCAAAGGGGTTGCTGGCCTTGTAGACCTTGTCGTTGCCGAGGGCCATC 3388
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|| || |||||||||||||| || ||||| ||||||| ||||||||||||| |
Sbjct 3387 AGGAGACGGTCGGCGACAAATTCAATGTAGGTCTTCATGAGGTCGGCGTTCATGCCAAGC 3328
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| || ||||| | ||| ||| ||||| ||||| || | || || ||| ||||
Sbjct 3327 AGGGCACAGGGCAGGGCCTCAGTCAAGAACTCCTTCTCAATAGCAACAGCATCGGTGATG 3268
Query 868931 AT 868932
||
Sbjct 3267 AT 3266
>seq184
Length=42538
Score = 107 bits (118), Expect = 2e-17
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 1574008 TCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCG 1574067
|||||||||| ||||| ||||||| | ||| |||| || ||| || | |
Sbjct 20221 TCGACGTCGTCCGCAATCGCATCAAGACCTTTGCCCAAAAGAAAGTCACCCTCCCCGCTG 20280
Query 1574068 GACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGG 1574127
| |||||||| | ||||||||||| || |||||| || | || |||| ||||| || |
Sbjct 20281 GCCGCCACAAACTCATCATCCTCGATGAAGCCGACAGCATGACCTCGGGCGCCCAACAAG 20340
Query 1574128 CCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACA 1574187
|||| || ||||||||||| || ||||||| || ||||| ||| | || ||||||
Sbjct 20341 CCCTCCGCCGCACCATGGAAATCTACTCCAACACCACCCGCTTCGCCTTTGCCTGCAACC 20400
Query 1574188 CGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCG 1574236
|| | |||||||| |||| ||| || || ||||| || ||
Sbjct 20401 AATCCAACAAAATCATCGAGCCCCTGCAATCCCGTTGTGCCATCCTCCG 20449
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107036044693469
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |