Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq687 178 2e-38 seq54 140 4e-27 seq60 127 2e-23 seq85 125 9e-23 seq184 107 2e-17 >seq687 Length=9991 Score = 178 bits (196), Expect = 2e-38 Identities = 277/396 (70%), Gaps = 10/396 (3%) Strand=Plus/Plus Query 18097 TTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATG 18156 || || ||||| ||||| || ||||||||||||||||||| | || || | | Sbjct 5580 TTCGGTGAGTCCCACGGCAAGGCCGTCGGCTGCATCATCGACAACCCACCCCCAGGTCTC 5639 Query 18157 CCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCA 18216 | || |||| ||||||||||| || || | || ||||| || ||||| ||| Sbjct 5640 TCCCTCACCGAAGCCGACATCCAACCCCAACTCACCCGTCGCCGCCCCGGCCAATCCGCC 5699 Query 18217 CTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGC 18276 | |||| || ||||| || || ||||||| ||||| || ||| || |||| Sbjct 5700 ATCACCACCCCTCGCAATGAAAAAGACCGCGTCACCATCCTCTCCGGCTGCGAATCCGGC 5759 Query 18277 CTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGAC 18336 | ||| || ||| | ||| | | | | ||| |||||| ||||| || ||| ||| Sbjct 5760 CGCACCCTTGGCACCCCCATTGCCATGACTGTCGCCAACGAAGACCAACGCCCCAAAGAC 5819 Query 18337 TATTCCGA--------CATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACA 18388 || | || |||| |||| ||||| ||||| |||||||||| ||||||| Sbjct 5820 TA--CGGAAACAAAACCATGGACAAGTACCCGCGTCCCTCGCACGCCGACTTCACCTACC 5877 Query 18389 TGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCC 18448 || || |||||||||||||| || || ||||| ||||| || || |||||||||||| Sbjct 5878 AGGAAAAATACGGCATCAAGGCCTCCTCCGGCGGTGGCCGTTCATCCGCCCGCGAGACCA 5937 Query 18449 TCATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAAAT 18484 | || ||||||||||| || ||||||||||||| Sbjct 5938 TTGCCCGTGTCGCCGCCGGAGCCGTCGCCGAGAAAT 5973 Score = 95.1 bits (104), Expect = 1e-13 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 19052 CATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTG 19111 || |||||| || || || || ||| ||||| || || | || || |||||||| Sbjct 6212 CACCGGCGGTACCGTCACCTGTGTGATCCGCAATGTCCCTACCGGTCTAGGCGAGCCTGC 6271 Query 19112 CTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGG 19171 ||||||||| | |||||| ||| ||||| |||||||| || || ||||| ||||| Sbjct 6272 CTTTGACAAACTAGAGGCCATGCTTGCCCATGCCATGCTATCTATTCCGGCATGCAAGGC 6331 Query 19172 ATTCGAGATTGGCAGCGGGTTTGCGGG 19198 || ||||||||| ||||||||||| Sbjct 6332 CTTTGAGATTGGCTCAGGGTTTGCGGG 6358 >seq54 Length=76171 Score = 140 bits (154), Expect = 4e-27 Identities = 211/300 (70%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| ||||| || || |||| ||| || || || ||||| || |||| ||||| || Sbjct 18263 CTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATAGGAACGATACCGTTCGA 18204 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||| ||||| || | ||| | || | ||| || | |||| || | ||| Sbjct 18203 GGTACCGTTAGTGCCGGCAATGTAAGAACCAGTGGCACGAATGCGGTGCACGTTCAGGCC 18144 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || || || ||| ||||||||| | ||||| ||| || ||||| ||||| ||||| Sbjct 18143 AATACCACCCGCCATCTTGGAGATCATAGCGCAAGTTTTCAGAGTGTCATAGATACCCTC 18084 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||| ||||||| |||||||| |||||||| || ||||| || | || || Sbjct 18083 AATGCTGTCATCCTTCATATCCACGAGGAAGCACGAAGACAGTTGCGCCTGGGGAGTACC 18024 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||||||||| || || || | || ||||| |||| | ||||||| || |||||| Sbjct 18023 GGCGTTGAAAAGAGTTGGGGATGCATGAGTGAAGAACTTGCTCGACATGAGGTTGTAGGT 17964 >seq60 Length=73589 Score = 127 bits (140), Expect = 2e-23 Identities = 93/108 (86%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| |||||||||| ||||||||||| || || || | || ||||| |||| |||||| Sbjct 15923 GCCTCCAACTACCTTGACATCAAGCCCCTTCTGGACGTCGGTTGCAAAACTGTCGCCAAC 15864 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATC 1592293 ||||||||||||||||| |||||||||||||||||||| || |||||| Sbjct 15863 ATGATCAAGGGCAAGTCTCCCGAGGAGATCCGCAAGACTTTCAACATC 15816 >seq85 Length=66049 Score = 125 bits (138), Expect = 9e-23 Identities = 218/315 (69%), Gaps = 3/315 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| ||||| || || ||||||||| || |||||| | |||| | | ||| Sbjct 2910 GAGTGAATGTTTTCCATCATGATCTGGAAACCATAAAAGCAGCGGGCCTCGGGAATCTGG 2851 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| ||| || | ||| ||||||| ||||| ||||| |||||| || Sbjct 2850 ACCTCGGCGGAGAAACGCTCAACCAAGTTCTCGTTGACGATACCGTCAGAGGCGGCAAAG 2791 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA-GCGACAC--CCAGTGG 869809 |||||||||| ||| ||||||| ||||||| | | | | ||| ||||| | Sbjct 2790 AAAGCCAGGATGTGGGAGATAAAGAACTGCTCGTCTTTGTTCATGCGGTTGTTCCAGTCG 2731 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | || | || || | ||||||||||||||||| || ||||||||||| ||| Sbjct 2730 TGGAGATCCTTGGACAGATCAATCTCCTCGGCGGTCCAGAAAGAAGCCTCGGCCTTCTTG 2671 Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCG 869929 ||||| | ||| | | ||||| ||| |||||||| || |||||||| ||||| || Sbjct 2670 TACATTTGCCAGATCTCGTGGTACTTGATGGGGAAGAGCACGAAGCGGTTAGGGTTCTCC 2611 Query 869930 CGCAACAGGGGTTCG 869944 ||| ||||||||| Sbjct 2610 TGCAGAAGGGGTTCG 2596 Score = 122 bits (134), Expect = 1e-21 Identities = 192/273 (70%), Gaps = 9/273 (3%) Strand=Plus/Minus Query 869194 GATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGAT 869253 ||||| |||||| |||| || || |||||||| || ||||| ||||| ||||| Sbjct 3178 GATCAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGAT 3119 Query 869254 GGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTC 869313 || | ||| |||||||| ||||| |||||||| ||||||||| | | ||| |||| Sbjct 3118 GGAGGCAAAAGCACCCGAGAAGAAGATACCCTCGACAGCGGCAAAGGCAACGAGACGCTG 3059 Query 869314 GGCAAAGGTGTCGAGGCCCTCCTTGTTG---ATCCACTTCATCGCCCAGTCGGCCTTTTT 869370 ||||||||| || |||||||| | |||||||||| |||||||| ||||| Sbjct 3058 GGCAAAGGTA--GA----CTCCTTGTCGGCGATCCACTTCAGGGCCCAGTCAGCCTTGCG 3005 Query 869371 CCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTT 869430 | | | || | || || |||||| || |||| | | ||| || ||||| Sbjct 3004 GCGAATGCAGGGAATAGTATCAATGGCGTTGAACAGGTAGGAACGCTGGGCGGGCTCCTT 2945 Query 869431 GACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 || ||||| || || || ||||| |||||||| Sbjct 2944 GATGTAGGTATCAATGAGCAGCGAGTAGGTCTC 2912 Score = 113 bits (124), Expect = 6e-19 Identities = 170/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||| | || ||| |||||| |||||||||||||| | |||||||| Sbjct 3507 GCCTTTTGGTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGCGAGATG 3448 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | || |||||| | ||||||| ||| ||| ||||| | | Sbjct 3447 TTCTCCATAAAGTCAAAGGGGTTGCTGGCCTTGTAGACCTTGTCGTTGCCGAGGGCCATC 3388 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || || |||||||||||||| || ||||| ||||||| ||||||||||||| | Sbjct 3387 AGGAGACGGTCGGCGACAAATTCAATGTAGGTCTTCATGAGGTCGGCGTTCATGCCAAGC 3328 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || ||||| | ||| ||| ||||| ||||| || | || || ||| |||| Sbjct 3327 AGGGCACAGGGCAGGGCCTCAGTCAAGAACTCCTTCTCAATAGCAACAGCATCGGTGATG 3268 Query 868931 AT 868932 || Sbjct 3267 AT 3266 >seq184 Length=42538 Score = 107 bits (118), Expect = 2e-17 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 1574008 TCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCG 1574067 |||||||||| ||||| ||||||| | ||| |||| || ||| || | | Sbjct 20221 TCGACGTCGTCCGCAATCGCATCAAGACCTTTGCCCAAAAGAAAGTCACCCTCCCCGCTG 20280 Query 1574068 GACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGG 1574127 | |||||||| | ||||||||||| || |||||| || | || |||| ||||| || | Sbjct 20281 GCCGCCACAAACTCATCATCCTCGATGAAGCCGACAGCATGACCTCGGGCGCCCAACAAG 20340 Query 1574128 CCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACA 1574187 |||| || ||||||||||| || ||||||| || ||||| ||| | || |||||| Sbjct 20341 CCCTCCGCCGCACCATGGAAATCTACTCCAACACCACCCGCTTCGCCTTTGCCTGCAACC 20400 Query 1574188 CGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCG 1574236 || | |||||||| |||| ||| || || ||||| || || Sbjct 20401 AATCCAACAAAATCATCGAGCCCCTGCAATCCCGTTGTGCCATCCTCCG 20449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107036044693469