Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq54 120 3e-22 seq59 98.7 9e-16 >seq54 Length=76171 Score = 120 bits (132), Expect = 3e-22 Identities = 429/662 (65%), Gaps = 24/662 (4%) Strand=Plus/Minus Query 138358 ATCTCCCACACGGTCTTGTATAGATCACGAATATGTC-GCGGTATTGTTGC-AATATTTT 138415 |||||||| || |||||||| ||| | || ||| || | | || || ||| |||| Sbjct 19459 ATCTCCCATACAGTCTTGTACAGACCCTTGAT--GTCAGCAGGAATGCTGGGAATGTTTT 19402 Query 138416 GAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACT 138475 |||| || ||| | ||||||||||| || ||||| ||| |||| | | Sbjct 19401 GAATTGAACCATTGTCGGCAATGATGCGGTTCTTCATGGAATCAGACCACAGGCCAAGGT 19342 Query 138476 TGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGAC 138535 | || ||| | ||| | ||| | |||||| || || || || | || || | Sbjct 19341 CAACCAGGTCACGCAACAGCCAGGGGTTGACGACCTGGAACTCGCCAGCTAGGACACGGC 19282 Query 138536 GAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCG 138595 | |||||||||| |||| | ||||| || ||||||| || ||||||||||| | | Sbjct 19281 GCTGGTAAATGTTGGAGGTGTAGGGCTCGAAGCATTCGTTATTGCCCAGAATCTGGGAAG 19222 Query 138596 TGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTC 138655 | | ||||| |||||| ||| | | | ||| || || | |||||| ||||||| Sbjct 19221 TACTGGCGGTGGGCATGGGCGCAAGTAGTAAAGAGTTGCGGATACCGTGCTGCTTGATCT 19162 Query 138656 GTTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACT 138715 ||||||| || || | ||||||||| | || || || | |||||||| || ||| Sbjct 19161 GTTCCTTCAGTGAGGTCCAGTCCCAGAGGTCACTGGGAGTGACATTCCACATGTCAAACT 19102 Query 138716 GTAACATTCCC----AAACTTGCGGGACTGCCTTCGTACGAATCGTATAC--ACCAAACT 138769 | | || ||| | || ||| ||| ||||| | ||| ||| || || Sbjct 19101 GCAGGATGCCCTGGGACACAGGCG----AGCCCTCGTAGG--TCGAGTACTTGCCCTCCT 19048 Query 138770 CTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCT 138829 || || | |||| ||||| || ||| | | |||||| || ||| || || Sbjct 19047 TCTGAGCAATCTCGCACGAGGCCTCAAGAGCAGCGTGGTAAATGGTCTCGAAGATATGAG 18988 Query 138830 GATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGG 138889 |||||| |||||||| || ||| | |||||||| || | ||| ||||||| Sbjct 18987 TGTTGAGCTGGCGGGCCTCAGCCGACTCAAAGGGCATGCGCAGAGCCAGGAAGGCGTCGG 18928 Query 138890 CCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCT-TTTGCGGCT 138948 | || || || || || || |||| || || || |||| || ||| || ||| Sbjct 18927 CAAGACCCTGAACACCGACACCGATGGGACGGTGACGCA----TGTTGCTGTTATATGCT 18872 Query 138949 TC---GATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTA 139005 || | ||| || | ||| ||||||||||| ||| | || || || || ||||| Sbjct 18871 TCAGTAACAGGGTAGTGGTTGACATCGATGATGCGGTTCAGGTTGCGAACAACAACCTTG 18812 Query 139006 GT 139007 || Sbjct 18811 GT 18810 >seq59 Length=73848 Score = 98.7 bits (108), Expect = 9e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | || || ||||| ||||| || ||||| ||||| || || || | Sbjct 15634 GATGCAGATTTTCGTCAAGACCCTAACGGGTAAGACGATTACCCTCGAGGTTGAGTCCTC 15575 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| || || || ||||| || || Sbjct 15574 GGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCA 15515 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || || |||||||||| || || |||||||||||| Sbjct 15514 GCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGAT 15478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449890530983960