Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq54 120 3e-22
seq59 98.7 9e-16
>seq54
Length=76171
Score = 120 bits (132), Expect = 3e-22
Identities = 429/662 (65%), Gaps = 24/662 (4%)
Strand=Plus/Minus
Query 138358 ATCTCCCACACGGTCTTGTATAGATCACGAATATGTC-GCGGTATTGTTGC-AATATTTT 138415
|||||||| || |||||||| ||| | || ||| || | | || || ||| ||||
Sbjct 19459 ATCTCCCATACAGTCTTGTACAGACCCTTGAT--GTCAGCAGGAATGCTGGGAATGTTTT 19402
Query 138416 GAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACT 138475
|||| || ||| | ||||||||||| || ||||| ||| |||| | |
Sbjct 19401 GAATTGAACCATTGTCGGCAATGATGCGGTTCTTCATGGAATCAGACCACAGGCCAAGGT 19342
Query 138476 TGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGAC 138535
| || ||| | ||| | ||| | |||||| || || || || | || || |
Sbjct 19341 CAACCAGGTCACGCAACAGCCAGGGGTTGACGACCTGGAACTCGCCAGCTAGGACACGGC 19282
Query 138536 GAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCG 138595
| |||||||||| |||| | ||||| || ||||||| || ||||||||||| | |
Sbjct 19281 GCTGGTAAATGTTGGAGGTGTAGGGCTCGAAGCATTCGTTATTGCCCAGAATCTGGGAAG 19222
Query 138596 TGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTC 138655
| | ||||| |||||| ||| | | | ||| || || | |||||| |||||||
Sbjct 19221 TACTGGCGGTGGGCATGGGCGCAAGTAGTAAAGAGTTGCGGATACCGTGCTGCTTGATCT 19162
Query 138656 GTTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACT 138715
||||||| || || | ||||||||| | || || || | |||||||| || |||
Sbjct 19161 GTTCCTTCAGTGAGGTCCAGTCCCAGAGGTCACTGGGAGTGACATTCCACATGTCAAACT 19102
Query 138716 GTAACATTCCC----AAACTTGCGGGACTGCCTTCGTACGAATCGTATAC--ACCAAACT 138769
| | || ||| | || ||| ||| ||||| | ||| ||| || ||
Sbjct 19101 GCAGGATGCCCTGGGACACAGGCG----AGCCCTCGTAGG--TCGAGTACTTGCCCTCCT 19048
Query 138770 CTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCT 138829
|| || | |||| ||||| || ||| | | |||||| || ||| || ||
Sbjct 19047 TCTGAGCAATCTCGCACGAGGCCTCAAGAGCAGCGTGGTAAATGGTCTCGAAGATATGAG 18988
Query 138830 GATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGG 138889
|||||| |||||||| || ||| | |||||||| || | ||| |||||||
Sbjct 18987 TGTTGAGCTGGCGGGCCTCAGCCGACTCAAAGGGCATGCGCAGAGCCAGGAAGGCGTCGG 18928
Query 138890 CCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCT-TTTGCGGCT 138948
| || || || || || || |||| || || || |||| || ||| || |||
Sbjct 18927 CAAGACCCTGAACACCGACACCGATGGGACGGTGACGCA----TGTTGCTGTTATATGCT 18872
Query 138949 TC---GATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTA 139005
|| | ||| || | ||| ||||||||||| ||| | || || || || |||||
Sbjct 18871 TCAGTAACAGGGTAGTGGTTGACATCGATGATGCGGTTCAGGTTGCGAACAACAACCTTG 18812
Query 139006 GT 139007
||
Sbjct 18811 GT 18810
>seq59
Length=73848
Score = 98.7 bits (108), Expect = 9e-16
Identities = 116/157 (74%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||| || | || || ||||| ||||| || ||||| ||||| || || || |
Sbjct 15634 GATGCAGATTTTCGTCAAGACCCTAACGGGTAAGACGATTACCCTCGAGGTTGAGTCCTC 15575
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | || | || || |||||||| ||||| || || || ||||| || ||
Sbjct 15574 GGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCA 15515
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859
|| || |||||||||| || || ||||||||||||
Sbjct 15514 GCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGAT 15478
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449890530983960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |