Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq85 170 3e-36 seq60 118 2e-20 seq184 107 3e-17 seq9 95.1 2e-13 >seq85 Length=66049 Score = 170 bits (188), Expect = 3e-36 Identities = 227/314 (72%), Gaps = 5/314 (2%) Strand=Plus/Minus Query 794355 GATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGAT 794414 ||||| |||||| ||| || || |||||||| || ||||| ||||| ||||| Sbjct 3178 GATCAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGAT 3119 Query 794415 GGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTC 794474 || ||| |||||||| ||||| |||||||| ||||||||| | ||||| |||| Sbjct 3118 GGAGGCAAAAGCACCCGAGAAGAAGATACCCTCGACAGCGGCAAAGGCAACGAGACGCTG 3059 Query 794475 GGCAAAAGTGTCCAGGC-CCTCTTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCC 794533 |||||| || || | ||| | | ||||||||||| ||||| || ||||| | Sbjct 3058 GGCAAAGGT----AGACTCCTTGTCGGCGATCCACTTCAGGGCCCAGTCAGCCTTGCGGC 3003 Query 794534 TCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGA 794593 | |||| | || || |||||| || |||| | || | | || ||||||| Sbjct 3002 GAATGCAGGGAATAGTATCAATGGCGTTGAACAGGTAGGAACGCTGGGCGGGCTCCTTGA 2943 Query 794594 CGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGA 794653 |||||| || ||||| |||||||||||||| ||||| |||||||| || |||||||| Sbjct 2942 TGTAGGTATCAATGAGCAGCGAGTAGGTCTCGGAGTGAATGTTTTCCATCATGATCTGGA 2883 Query 794654 AGCCATAAAAGCAG 794667 | |||||||||||| Sbjct 2882 AACCATAAAAGCAG 2869 Score = 111 bits (122), Expect = 2e-18 Identities = 174/249 (70%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 793892 GACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAG 793951 ||| || ||||| || ||| | || ||| |||||| |||||||||||||| | || Sbjct 3514 GACACCGGCCTTTTGGTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAG 3455 Query 793952 CGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAG 794011 |||||| |||||| | || |||||| | | |||| ||| ||| ||||| Sbjct 3454 CGAGATGTTCTCCATAAAGTCAAAGGGGTTGCTGGCCTTGTAGACCTTGTCGTTGCCGAG 3395 Query 794012 CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCAT 794071 | | || || ||||||||||| ||||||||||| ||||||| |||||||||| Sbjct 3394 GGCCATCAGGAGACGGTCGGCGACAAATTCAATGTAGGTCTTCATGAGGTCGGCGTTCAT 3335 Query 794072 GCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131 ||| | || || |||||| | ||| | | ||||| ||||| || | || || || Sbjct 3334 GCCAAGCAGGGCACAGGGCAGGGCCTCAGTCAAGAACTCCTTCTCAATAGCAACAGCATC 3275 Query 794132 GATGATGAT 794140 | ||||||| Sbjct 3274 GGTGATGAT 3266 Score = 104 bits (114), Expect = 4e-16 Identities = 195/284 (69%), Gaps = 11/284 (4%) Strand=Plus/Minus Query 796140 AAAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGC 796199 ||| || | ||||||||| | |||||||| ||| || | ||| |||||| Sbjct 2875 AAAGCAGCGGGCCTCGGGAATCTGGACCTCGGCGGAGAAACGCTCAACCAAGTTCTCGTT 2816 Query 796200 CACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTC 796259 ||||| ||||| |||||| || || || |||| ||| ||||||| ||||||| Sbjct 2815 GACGATACCGTCAGAGGCGGCAAAGAAAGCCAGGATGTGGGAGATAAAGAACTGCTCGTC 2756 Query 796260 GTCGCTGA-GCGA--GACCCAGTGGACCGTG----TCGGCGCCGAGGTCGACCTCCTCGG 796312 | | | | ||| | ||||| |||| || | || || | |||||||| Sbjct 2755 TTTGTTCATGCGGTTGTTCCAGT----CGTGGAGATCCTTGGACAGATCAATCTCCTCGG 2700 Query 796313 CGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGG 796372 ||||||| || || ||||||||||| |||||||| | ||| ||| ||||| ||||| Sbjct 2699 CGGTCCAGAAAGAAGCCTCGGCCTTCTTGTACATTTGCCAGATCTCGTGGTACTTGATGG 2640 Query 796373 GGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTCG 796416 |||| || || ||||| || |||||||| | || || || ||| Sbjct 2639 GGAAGAGCACGAAGCGGTTAGGGTTCTCCTGCAGAAGGGGTTCG 2596 >seq60 Length=73589 Score = 118 bits (130), Expect = 2e-20 Identities = 91/108 (84%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| |||||||||| |||||||||||||| || || | || ||||| || || |||||| Sbjct 15923 GCCTCCAACTACCTTGACATCAAGCCCCTTCTGGACGTCGGTTGCAAAACTGTCGCCAAC 15864 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATC 2035754 | |||||||||||||| |||||||| ||||||||||| || |||||| Sbjct 15863 ATGATCAAGGGCAAGTCTCCCGAGGAGATCCGCAAGACTTTCAACATC 15816 >seq184 Length=42538 Score = 107 bits (118), Expect = 3e-17 Identities = 137/188 (73%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 2019183 AAAAGAA--TCGACCTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACT 2019240 ||||||| || ||| || | ||||||||||| | |||||||||||||| |||||| Sbjct 20257 AAAAGAAAGTCACCCTCCCCGCTGGCCGCCACAAACTCATCATCCTCGATGAAGCCGACA 20316 Query 2019241 GCCTTACGTCGGCGGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGA 2019300 || | || |||| ||||| || |||||||| |||||||||| ||| ||||||| | Sbjct 20317 GCATGACCTCGGGCGCCCAACAAGCCCTCCGCCGCACCATGGAAATCTACTCCAACACCA 20376 Query 2019301 CGCGGTTTGCGCTGGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTT 2019360 | || || || | ||||||||| || | ||||||| |||| || ||||| Sbjct 20377 CCCGCTTCGCCTTTGCCTGCAACCAATCCAACAAAATCATCGAGCCCCTGCAATCCCGTT 20436 Query 2019361 GCGCCATC 2019368 | |||||| Sbjct 20437 GTGCCATC 20444 >seq9 Length=132744 Score = 95.1 bits (104), Expect = 2e-13 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 |||||||||||| |||||||||||||| || ||||||||| ||||||| || ||| | | Sbjct 8513 GTACTTGGTGACAGCCTTGGTACCCTCAGAAACGGCGTGCTTGGCCAGCTCACCGGGGAG 8454 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTC 1485557 ||| || || || | |||||||||||| Sbjct 8453 GATAAGACGGACAGAGGTCTGGATCTC 8427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916112687176823