Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq85 170 3e-36
seq60 118 2e-20
seq184 107 3e-17
seq9 95.1 2e-13
>seq85
Length=66049
Score = 170 bits (188), Expect = 3e-36
Identities = 227/314 (72%), Gaps = 5/314 (2%)
Strand=Plus/Minus
Query 794355 GATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGAT 794414
||||| |||||| ||| || || |||||||| || ||||| ||||| |||||
Sbjct 3178 GATCAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGAT 3119
Query 794415 GGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTC 794474
|| ||| |||||||| ||||| |||||||| ||||||||| | ||||| ||||
Sbjct 3118 GGAGGCAAAAGCACCCGAGAAGAAGATACCCTCGACAGCGGCAAAGGCAACGAGACGCTG 3059
Query 794475 GGCAAAAGTGTCCAGGC-CCTCTTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCC 794533
|||||| || || | ||| | | ||||||||||| ||||| || ||||| |
Sbjct 3058 GGCAAAGGT----AGACTCCTTGTCGGCGATCCACTTCAGGGCCCAGTCAGCCTTGCGGC 3003
Query 794534 TCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGA 794593
| |||| | || || |||||| || |||| | || | | || |||||||
Sbjct 3002 GAATGCAGGGAATAGTATCAATGGCGTTGAACAGGTAGGAACGCTGGGCGGGCTCCTTGA 2943
Query 794594 CGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGA 794653
|||||| || ||||| |||||||||||||| ||||| |||||||| || ||||||||
Sbjct 2942 TGTAGGTATCAATGAGCAGCGAGTAGGTCTCGGAGTGAATGTTTTCCATCATGATCTGGA 2883
Query 794654 AGCCATAAAAGCAG 794667
| ||||||||||||
Sbjct 2882 AACCATAAAAGCAG 2869
Score = 111 bits (122), Expect = 2e-18
Identities = 174/249 (70%), Gaps = 0/249 (0%)
Strand=Plus/Minus
Query 793892 GACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAG 793951
||| || ||||| || ||| | || ||| |||||| |||||||||||||| | ||
Sbjct 3514 GACACCGGCCTTTTGGTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAG 3455
Query 793952 CGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAG 794011
|||||| |||||| | || |||||| | | |||| ||| ||| |||||
Sbjct 3454 CGAGATGTTCTCCATAAAGTCAAAGGGGTTGCTGGCCTTGTAGACCTTGTCGTTGCCGAG 3395
Query 794012 CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCAT 794071
| | || || ||||||||||| ||||||||||| ||||||| ||||||||||
Sbjct 3394 GGCCATCAGGAGACGGTCGGCGACAAATTCAATGTAGGTCTTCATGAGGTCGGCGTTCAT 3335
Query 794072 GCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131
||| | || || |||||| | ||| | | ||||| ||||| || | || || ||
Sbjct 3334 GCCAAGCAGGGCACAGGGCAGGGCCTCAGTCAAGAACTCCTTCTCAATAGCAACAGCATC 3275
Query 794132 GATGATGAT 794140
| |||||||
Sbjct 3274 GGTGATGAT 3266
Score = 104 bits (114), Expect = 4e-16
Identities = 195/284 (69%), Gaps = 11/284 (4%)
Strand=Plus/Minus
Query 796140 AAAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGC 796199
||| || | ||||||||| | |||||||| ||| || | ||| ||||||
Sbjct 2875 AAAGCAGCGGGCCTCGGGAATCTGGACCTCGGCGGAGAAACGCTCAACCAAGTTCTCGTT 2816
Query 796200 CACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTC 796259
||||| ||||| |||||| || || || |||| ||| ||||||| |||||||
Sbjct 2815 GACGATACCGTCAGAGGCGGCAAAGAAAGCCAGGATGTGGGAGATAAAGAACTGCTCGTC 2756
Query 796260 GTCGCTGA-GCGA--GACCCAGTGGACCGTG----TCGGCGCCGAGGTCGACCTCCTCGG 796312
| | | | ||| | ||||| |||| || | || || | ||||||||
Sbjct 2755 TTTGTTCATGCGGTTGTTCCAGT----CGTGGAGATCCTTGGACAGATCAATCTCCTCGG 2700
Query 796313 CGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGG 796372
||||||| || || ||||||||||| |||||||| | ||| ||| ||||| |||||
Sbjct 2699 CGGTCCAGAAAGAAGCCTCGGCCTTCTTGTACATTTGCCAGATCTCGTGGTACTTGATGG 2640
Query 796373 GGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTCG 796416
|||| || || ||||| || |||||||| | || || || |||
Sbjct 2639 GGAAGAGCACGAAGCGGTTAGGGTTCTCCTGCAGAAGGGGTTCG 2596
>seq60
Length=73589
Score = 118 bits (130), Expect = 2e-20
Identities = 91/108 (84%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706
||| |||||||||| |||||||||||||| || || | || ||||| || || ||||||
Sbjct 15923 GCCTCCAACTACCTTGACATCAAGCCCCTTCTGGACGTCGGTTGCAAAACTGTCGCCAAC 15864
Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATC 2035754
| |||||||||||||| |||||||| ||||||||||| || ||||||
Sbjct 15863 ATGATCAAGGGCAAGTCTCCCGAGGAGATCCGCAAGACTTTCAACATC 15816
>seq184
Length=42538
Score = 107 bits (118), Expect = 3e-17
Identities = 137/188 (73%), Gaps = 2/188 (1%)
Strand=Plus/Plus
Query 2019183 AAAAGAA--TCGACCTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACT 2019240
||||||| || ||| || | ||||||||||| | |||||||||||||| ||||||
Sbjct 20257 AAAAGAAAGTCACCCTCCCCGCTGGCCGCCACAAACTCATCATCCTCGATGAAGCCGACA 20316
Query 2019241 GCCTTACGTCGGCGGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGA 2019300
|| | || |||| ||||| || |||||||| |||||||||| ||| ||||||| |
Sbjct 20317 GCATGACCTCGGGCGCCCAACAAGCCCTCCGCCGCACCATGGAAATCTACTCCAACACCA 20376
Query 2019301 CGCGGTTTGCGCTGGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTT 2019360
| || || || | ||||||||| || | ||||||| |||| || |||||
Sbjct 20377 CCCGCTTCGCCTTTGCCTGCAACCAATCCAACAAAATCATCGAGCCCCTGCAATCCCGTT 20436
Query 2019361 GCGCCATC 2019368
| ||||||
Sbjct 20437 GTGCCATC 20444
>seq9
Length=132744
Score = 95.1 bits (104), Expect = 2e-13
Identities = 73/87 (84%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530
|||||||||||| |||||||||||||| || ||||||||| ||||||| || ||| | |
Sbjct 8513 GTACTTGGTGACAGCCTTGGTACCCTCAGAAACGGCGTGCTTGGCCAGCTCACCGGGGAG 8454
Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTC 1485557
||| || || || | ||||||||||||
Sbjct 8453 GATAAGACGGACAGAGGTCTGGATCTC 8427
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916112687176823
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |