Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq30 109 4e-19
>seq30
Length=92847
Score = 109 bits (120), Expect = 4e-19
Identities = 141/192 (73%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
|| || |||| ||||| ||||| || || |||||||| || ||||||| |||||||
Sbjct 12145 CGGAGGACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGCAAGGGTGCGACCG 12086
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| || || || || |||||| | || | | ||||||||||| || |||||||| ||
Sbjct 12085 TCTTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTA 12026
Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
||||| ||| || | |||||| | || | ||||| || ||| || || || || ||
Sbjct 12025 TCTTG-AATCTTGGATTTGACGTTGTCGATGGTGTCTGACGATTCAACCTCGAGGGTGAT 11967
Query 29751 AGTTTTGCCAGT 29762
|| ||||||||
Sbjct 11966 GGTCTTGCCAGT 11955
Score = 96.9 bits (106), Expect = 3e-15
Identities = 153/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || |||| ||| || || || || || || ||||| || || || | ||| |||
Sbjct 12691 ACGAAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTACGACC 12632
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
|| || || || || |||||| | || | | ||||||||||| || || ||||| ||
Sbjct 12631 GTCTTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTT 12572
Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
||| || ||| || | |||||| | || | |||||| || || || || || || |
Sbjct 12571 GTCCTG-AATCTTGGACTTGACATTGTCAATAGTGTCCGAGGTCTCAACCTCCAGGGTAA 12513
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
| || |||||||| | || || ||||| || |||||
Sbjct 12512 TGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 12476
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385213298562237
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |