Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq30 132 9e-26 >seq30 Length=92847 Score = 132 bits (146), Expect = 9e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| | ||||||||||| || ||||| || || || || | || | | ||| Sbjct 12691 ACGAAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTACGACC 12632 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 |||||| || || ||||||||||| || || | || ||||| || || || || ||||| Sbjct 12631 GTCTTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTT 12572 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTA 82773 || |||||||| | || ||||| ||||| || || |||| || || |||| || | Sbjct 12571 GTCCTGAATCTTGGACTTGACATTGTCAATAGTGTC-CGAGGTCTCAACCTCCAGGGTAA 12513 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||||||| |||| ||||| ||||| || ||||| Sbjct 12512 TGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 12476 Score = 96.9 bits (106), Expect = 7e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || || || || ||||| || || || || | || | | |||| Sbjct 12145 CGGAGGACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGCAAGGGTGCGACCG 12086 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || ||||||||||| || || | || ||||| || || || || |||||| Sbjct 12085 TCTTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTA 12026 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||||||||| | ||| || || || || || || | ||| || || | || || Sbjct 12025 TCTTGAATCTTGGATTTGACGTTGTCGATGGTGTCTGACGATTCAACCTCGAGGGTGATG 11966 Query 82776 GTCTTGCCTGT 82786 |||||||| || Sbjct 11965 GTCTTGCCAGT 11955 Score = 89.7 bits (98), Expect = 1e-12 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||| | ||||||||||| || ||||| || || || || | Sbjct 12476 TACCACCACGGAGACGAAGAACGAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCTG 12417 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | |||||| || || || || || || || || || | || || || || | Sbjct 12416 CCAGGGTACGACCGTCCTCCAGCTGCTTGCCTGCGAAAATCAGGCGCTGCTGGTCAGGGG 12357 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || |||||||| | || ||||| ||||| || || | || | Sbjct 12356 GGATGCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATAGTGTCCGAGGACTCGA 12297 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTAC 82798 |||| | || || ||||| || || | ||||| || Sbjct 12296 CTTCTAGGGTGATGGTCTTTCCGGTGAGGGTCTTGAC 12260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981811387366123