Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq54 208 7e-49
seq85 161 1e-34
seq30 123 2e-23
seq169 113 4e-20
seq59 109 5e-19
>seq54
Length=76171
Score = 208 bits (230), Expect = 7e-49
Identities = 927/1447 (64%), Gaps = 57/1447 (4%)
Strand=Plus/Minus
Query 148116 ATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGC 148175
|||||||| | ||||||||||| | |||||| | | | ||||||| | ||| ||
Sbjct 19459 ATCTCCCATACAGTCTTGTACAGACCCTTGATGTCAGCAGGAATGCTGGGAATGTTTTGA 19400
Query 148176 ACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCG 148235
| || || || |||| || | || ||| || | | ||| || ||
Sbjct 19399 ATTGAACCATTGTCGGCAATGATGCGGTTCTTCATGGAATCAGACCACAGGCCAAGGTCA 19340
Query 148236 ATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGC 148295
| ||||||| | ||| | | || || ||||| |||||||| || || || || |||
Sbjct 19339 ACCAGGTCACGCAACAGCCAGGGGTTGACGACCTGGAACTCGCCAGCTAGGACACGGCGC 19280
Query 148296 AGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTC 148355
| || | |||| || | || || || | ||||| ||||||| |||||| | ||
Sbjct 19279 TGGTAAATGTTGGAGGTGTAGGGCTCGAAGCATTCGTTATTGCCCAGAATCTGGGAAGTA 19220
Query 148356 GTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTG 148415
| || ||||||||| ||| | || | |||||||| | |||| | | || || |
Sbjct 19219 CTGGCGGTGGGCATGGGCGCAAGTAGTAAAGAGTTGCGGATACCGTGCTGCTTGATCTGT 19160
Query 148416 CGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGAC--GGTGTCACGTTCCACATGTCGTACT 148473
|||||| | | |||||||||||| | || || || || ||||||||||| |||
Sbjct 19159 TCCTTCAGTGAGGTCCAGTCCCAGAG--GTCACTGGGAGTGACATTCCACATGTCAAACT 19102
Query 148474 GCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCG 148533
|||| ||||| || | || ||||||||| | |||| || | | | |
Sbjct 19101 GCAGGATGCCCTGGGACACAGGCGAGCCCTCGTAGGTCGAGTACTTGCCCTCCTTCTGAG 19042
Query 148534 CCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGA 148593
| | ||||| ||||| || || ||| |||||| |||||| || || ||||||
Sbjct 19041 CAATCTCGCACGAGGCCTCAAGAGCAGCGTGGTAAATGGTCTCGAAGATATGAGTGTTGA 18982
Query 148594 GCAG------CGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGG 148647
|| | | | |||||| || | ||||| ||||| || || |||||||
Sbjct 18981 GCTGGCGGGCCTCAGCCGAC------TCAAAGGGCATGCGCAGAGCCAGGAAGGCGTCGG 18928
Query 148648 CAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCT 148707
|||| ||||| || || || || ||||| ||||| |||||| | || ||
Sbjct 18927 CAAGACCCTGAACACCGACACCGATGGGACGGTGACGCATGTTGCTGTTATATGC-TTCA 18869
Query 148708 CGAGC-GGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTA 148766
| | || ||||||||| |||||||| || || ||||| || || ||||| ||
Sbjct 18868 GTAACAGGGTAGTGGTTGACATCGATGATGCGGTTCAGGTTGCGAACAACAACCTTGGTG 18809
Query 148767 ATTCTGCGCAGCAATTCAAAATCGTAC---TTG-TCATCTA--CGAT----GCATCGGTT 148816
| | ||||| | ||||||||| ||| | | || | || ||| ||
Sbjct 18808 ACCTCGTGCAGCTTATGGAAATCGTACGAGTTGTTGGTGTAGTCAATAAAGGCA--GG-- 18753
Query 148817 CACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGAT 148876
| ||| | ||| || || ||||| || || |||||| || || | ||| || | ||
Sbjct 18752 GAGGGCCAAAGAAGCAAGGTTGCAGACAGCAACCTCATCAGGAGCACAGTATTCAATAAT 18693
Query 148877 CTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTT 148936
||| | |||||| ||| || ||| |||| |||||| || || ||||||| |||
Sbjct 18692 CTCAGTGCACAGGTTGGAGCTGCGGATAGTACCCAGGTTCTTCTGGTTACTCTTGCGGTT 18633
Query 148937 GCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGAA 148996
||| |||||||||||||||| |||| ||||| || ||| | ||||| || |
Sbjct 18632 GCAGTGGTCCTTGTACAGCATGAACGGGTTACCAGTCTCAGTCTGAGCTTCCAGGAT-AG 18574
Query 148997 CCGA-TGCAGGTCCTGCGCGCGCACTTGCTGCTC-GTAG----CGACCCTCCTGCTCGTA 149050
| | ||| | || || ||| || || | |||||||||| || ||
Sbjct 18573 CATACCACAGCTTTTGGGC-----TTTGAGAGTCAGTCGACCACGACCCTCCTTTTCATA 18519
Query 149051 --TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTG 149108
| ||| | || ||||||| | |||||||| || || | ||||| |||||||
Sbjct 18518 CTTCTCGTACAATGC--CTCGAACTCATCGCCGTAACAGTCAGCCAGACCAGGGCACTCA 18461
Query 149109 TGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGC 149168
| |||||||| || | |||| || ||| | | || |||||||| || ||||| ||
Sbjct 18460 TTGGGGCACATAAGAGTCCACTCGGCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGG 18401
Query 149169 ACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGC 149228
| ||| || || | || || || || | ||||| ||| || |||
Sbjct 18400 ATCCACAGAGCCAGGAAAAGATCACGGGCACGGACTTCTTCTTTGCCGTGATTCTTGCGG 18341
Query 149229 AGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCC 149288
|| | ||| | || | ||||||||||||||||| | ||| | || | || ||
Sbjct 18340 AGATCGAGGAACTCAAAAACATCCGCGTGCCACGGCTCGAGGTAGATAGCAAAAGCACCA 18281
Query 149289 TTGCGC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATA 149345
||| ||||| |||||||| |||| || | ||||||| ||||| || | ||||
Sbjct 18280 GGACGCTTGTTGCCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATA 18221
Query 149346 GGTTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACT 149405
|| | || || | | || |||||||| | |||| | || || || |
Sbjct 18220 GGAACGATACCGTTCGAGGTACCGTTAGTGCCGGCAATGTAAGAACCAGTGGCACGAATG 18161
Query 149406 TTGTGCACGTTGACGCCGATGCC-GCCGCCGTACTTTGAGATGGCCGCGCA--GTCGCCG 149462
||||||||| | ||| || || ||||| | ||| ||||| ||||| | | |
Sbjct 18160 CGGTGCACGTTCAGGCCAATACCACCCGCCAT-CTTGGAGATCATAGCGCAAGTTTTCAG 18102
Query 149463 AGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCAC 149522
|| ||| ||||| ||||| |||||||| |||||| || || |||||||| ||
Sbjct 18101 AGTGTC--ATAGATACCCTCAATGCTGTCATCCTTCATATCCACGAGGAAGCACGAAGAC 18044
Query 149523 ATTTGCG 149529
| |||||
Sbjct 18043 AGTTGCG 18037
>seq85
Length=66049
Score = 161 bits (178), Expect = 1e-34
Identities = 351/519 (68%), Gaps = 15/519 (3%)
Strand=Plus/Minus
Query 120354 GTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCAT 120413
||| ||| |||| || ||||| || ||||| || ||||| | | ||| ||||| | |||
Sbjct 3499 GTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGCGAGATGTTCTCCAT 3440
Query 120414 AAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAGTCG 120473
||| || || |||||||| || || || || | ||| | | || || ||
Sbjct 3439 AAAGTCAAAGGGGTTGCTGGCCTTGTAGACCTTGTCGTTGCCGAGGGCCATCAGGAGACG 3380
Query 120474 GTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCCAC 120533
||| || ||||| |||||||| |||| | ||||||||||| |||| ||
Sbjct 3379 GTCGGCGACAAATTCAATGTAGGTCTTCATGAGGTCGGCGTTCATGCCAAGCAGGGCACA 3320
Query 120534 CGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGCGAG 120593
|||| ||| || || |||||||||||||| | || || || ||| ||| |
Sbjct 3319 GGGCAGGGCCTCAGTCAAGAACTCCTTCTCAATAGCAACAGCATCGGTGATGATGTCCTC 3260
Query 120594 CAT-AGTG--TGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGCAAA 120650
|| ||| | || ||| |||| | | || | || || |||||| |||||
Sbjct 3259 AATCAGTTGCTTGCTGGGGCGGTTGT-TAAGGTGGGAGT-----AGAGCAGGCAAGCAAA 3206
Query 120651 GTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCAT 120710
||| ||||| |||||||| || || || |||||||||||| || ||||| || |||||
Sbjct 3205 GTCAGTGTGAAGGCCCTCATCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGCAT 3146
Query 120711 GATGCCTTTCGTCTTG---ATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCC 120767
|| || || |||| | |||| |||| |||||| ||||| ||||| | ||
Sbjct 3145 GAGACC--ACG-CTTGCGCAGCCAGAAGATGGAGGCAAAAGCACCCGAGAAGAAGATACC 3089
Query 120768 CTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCA 120827
||| || ||||||||| || | |||| ||| || || | | |||| | |||||||
Sbjct 3088 CTCGACAGCGGCAAAGGCAACGAGACGCTGGGCAAAGGTAGACTCCTTGTCGGCGATCCA 3029
Query 120828 CTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCAT 120866
||||| |||||| || ||||| ||| | ||| || ||
Sbjct 3028 CTTCAGGGCCCAGTCAGCCTTGCGGCGAATGCAGGGAAT 2990
>seq30
Length=92847
Score = 123 bits (136), Expect = 2e-23
Identities = 142/189 (75%), Gaps = 4/189 (2%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521
|| ||||| ||||| || ||||| || ||| || |||| |||||| ||||||||||
Sbjct 12444 GTAGACTCCTTCTGAATGTTGTAGTCTGCCAGGGT--ACGACCGTCCTCCAGCTGCTTGC 12387
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| ||| |||| || ||||||||||| || ||||||||||||||||| ||||| ||
Sbjct 12386 CTGCGAAAATCAGGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGAATCTTGGACT 12327
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
||| | |||| ||||| | || ||| || || | ||||| ||| || ||||| || |
Sbjct 12326 TGACATTGTCAATAGTGTCCGAGGACTCGACTTCTAGGGTGATGGTCTTTCCGGTGAGGG 12267
Query 133642 TTTTTACGA 133650
| || ||||
Sbjct 12266 TCTTGACGA 12258
>seq169
Length=45351
Score = 113 bits (124), Expect = 4e-20
Identities = 141/191 (74%), Gaps = 2/191 (1%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||||||||| ||||| || ||||| || ||| ||| | | | ||||| ||||||||||
Sbjct 32245 GGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCA-TCCTCAAGCTGCTTGC 32303
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || | || || ||||||||||| || ||||| || |||||||| |||||| ||
Sbjct 32304 CAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGACT 32363
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
||| | || | |||||| | || ||| || || | ||| | ||| || || ||||| |
Sbjct 32364 TGACGTTGTCGATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGG 32423
Query 133642 TTTTTACGAAA 133652
| || ||||||
Sbjct 32424 TCTTGACGAAA 32434
>seq59
Length=73848
Score = 109 bits (120), Expect = 5e-19
Identities = 139/189 (74%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 133473 TTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAAAT 133531
||||| |||||||| || ||| || | | | ||||| ||||||||||| || | ||
Sbjct 15446 TTCTGGATATTGTAGTCCGCCAGGGTACGGCCA-TCCTCCAGCTGCTTGCCAGCAAAGAT 15504
Query 133532 GAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTC 133591
|| ||||||||||| ||||| ||||| |||||||| |||||| ||||| | ||
Sbjct 15505 CAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTC 15564
Query 133592 AACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAA 133651
| ||||| | || ||| || |||| ||| | || || || || || || || |||||
Sbjct 15565 GATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTTAGGGTCTTGACGAA 15624
Query 133652 AATCTGCAT 133660
|||||||||
Sbjct 15625 AATCTGCAT 15633
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483413204250680
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