Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq54 208 7e-49 seq85 161 1e-34 seq30 123 2e-23 seq169 113 4e-20 seq59 109 5e-19 >seq54 Length=76171 Score = 208 bits (230), Expect = 7e-49 Identities = 927/1447 (64%), Gaps = 57/1447 (4%) Strand=Plus/Minus Query 148116 ATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGC 148175 |||||||| | ||||||||||| | |||||| | | | ||||||| | ||| || Sbjct 19459 ATCTCCCATACAGTCTTGTACAGACCCTTGATGTCAGCAGGAATGCTGGGAATGTTTTGA 19400 Query 148176 ACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCG 148235 | || || || |||| || | || ||| || | | ||| || || Sbjct 19399 ATTGAACCATTGTCGGCAATGATGCGGTTCTTCATGGAATCAGACCACAGGCCAAGGTCA 19340 Query 148236 ATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGC 148295 | ||||||| | ||| | | || || ||||| |||||||| || || || || ||| Sbjct 19339 ACCAGGTCACGCAACAGCCAGGGGTTGACGACCTGGAACTCGCCAGCTAGGACACGGCGC 19280 Query 148296 AGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTC 148355 | || | |||| || | || || || | ||||| ||||||| |||||| | || Sbjct 19279 TGGTAAATGTTGGAGGTGTAGGGCTCGAAGCATTCGTTATTGCCCAGAATCTGGGAAGTA 19220 Query 148356 GTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTG 148415 | || ||||||||| ||| | || | |||||||| | |||| | | || || | Sbjct 19219 CTGGCGGTGGGCATGGGCGCAAGTAGTAAAGAGTTGCGGATACCGTGCTGCTTGATCTGT 19160 Query 148416 CGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGAC--GGTGTCACGTTCCACATGTCGTACT 148473 |||||| | | |||||||||||| | || || || || ||||||||||| ||| Sbjct 19159 TCCTTCAGTGAGGTCCAGTCCCAGAG--GTCACTGGGAGTGACATTCCACATGTCAAACT 19102 Query 148474 GCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCG 148533 |||| ||||| || | || ||||||||| | |||| || | | | | Sbjct 19101 GCAGGATGCCCTGGGACACAGGCGAGCCCTCGTAGGTCGAGTACTTGCCCTCCTTCTGAG 19042 Query 148534 CCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGA 148593 | | ||||| ||||| || || ||| |||||| |||||| || || |||||| Sbjct 19041 CAATCTCGCACGAGGCCTCAAGAGCAGCGTGGTAAATGGTCTCGAAGATATGAGTGTTGA 18982 Query 148594 GCAG------CGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGG 148647 || | | | |||||| || | ||||| ||||| || || ||||||| Sbjct 18981 GCTGGCGGGCCTCAGCCGAC------TCAAAGGGCATGCGCAGAGCCAGGAAGGCGTCGG 18928 Query 148648 CAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCT 148707 |||| ||||| || || || || ||||| ||||| |||||| | || || Sbjct 18927 CAAGACCCTGAACACCGACACCGATGGGACGGTGACGCATGTTGCTGTTATATGC-TTCA 18869 Query 148708 CGAGC-GGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTA 148766 | | || ||||||||| |||||||| || || ||||| || || ||||| || Sbjct 18868 GTAACAGGGTAGTGGTTGACATCGATGATGCGGTTCAGGTTGCGAACAACAACCTTGGTG 18809 Query 148767 ATTCTGCGCAGCAATTCAAAATCGTAC---TTG-TCATCTA--CGAT----GCATCGGTT 148816 | | ||||| | ||||||||| ||| | | || | || ||| || Sbjct 18808 ACCTCGTGCAGCTTATGGAAATCGTACGAGTTGTTGGTGTAGTCAATAAAGGCA--GG-- 18753 Query 148817 CACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGAT 148876 | ||| | ||| || || ||||| || || |||||| || || | ||| || | || Sbjct 18752 GAGGGCCAAAGAAGCAAGGTTGCAGACAGCAACCTCATCAGGAGCACAGTATTCAATAAT 18693 Query 148877 CTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTT 148936 ||| | |||||| ||| || ||| |||| |||||| || || ||||||| ||| Sbjct 18692 CTCAGTGCACAGGTTGGAGCTGCGGATAGTACCCAGGTTCTTCTGGTTACTCTTGCGGTT 18633 Query 148937 GCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGAA 148996 ||| |||||||||||||||| |||| ||||| || ||| | ||||| || | Sbjct 18632 GCAGTGGTCCTTGTACAGCATGAACGGGTTACCAGTCTCAGTCTGAGCTTCCAGGAT-AG 18574 Query 148997 CCGA-TGCAGGTCCTGCGCGCGCACTTGCTGCTC-GTAG----CGACCCTCCTGCTCGTA 149050 | | ||| | || || ||| || || | |||||||||| || || Sbjct 18573 CATACCACAGCTTTTGGGC-----TTTGAGAGTCAGTCGACCACGACCCTCCTTTTCATA 18519 Query 149051 --TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTG 149108 | ||| | || ||||||| | |||||||| || || | ||||| ||||||| Sbjct 18518 CTTCTCGTACAATGC--CTCGAACTCATCGCCGTAACAGTCAGCCAGACCAGGGCACTCA 18461 Query 149109 TGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGC 149168 | |||||||| || | |||| || ||| | | || |||||||| || ||||| || Sbjct 18460 TTGGGGCACATAAGAGTCCACTCGGCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGG 18401 Query 149169 ACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGC 149228 | ||| || || | || || || || | ||||| ||| || ||| Sbjct 18400 ATCCACAGAGCCAGGAAAAGATCACGGGCACGGACTTCTTCTTTGCCGTGATTCTTGCGG 18341 Query 149229 AGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCC 149288 || | ||| | || | ||||||||||||||||| | ||| | || | || || Sbjct 18340 AGATCGAGGAACTCAAAAACATCCGCGTGCCACGGCTCGAGGTAGATAGCAAAAGCACCA 18281 Query 149289 TTGCGC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATA 149345 ||| ||||| |||||||| |||| || | ||||||| ||||| || | |||| Sbjct 18280 GGACGCTTGTTGCCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATA 18221 Query 149346 GGTTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACT 149405 || | || || | | || |||||||| | |||| | || || || | Sbjct 18220 GGAACGATACCGTTCGAGGTACCGTTAGTGCCGGCAATGTAAGAACCAGTGGCACGAATG 18161 Query 149406 TTGTGCACGTTGACGCCGATGCC-GCCGCCGTACTTTGAGATGGCCGCGCA--GTCGCCG 149462 ||||||||| | ||| || || ||||| | ||| ||||| ||||| | | | Sbjct 18160 CGGTGCACGTTCAGGCCAATACCACCCGCCAT-CTTGGAGATCATAGCGCAAGTTTTCAG 18102 Query 149463 AGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCAC 149522 || ||| ||||| ||||| |||||||| |||||| || || |||||||| || Sbjct 18101 AGTGTC--ATAGATACCCTCAATGCTGTCATCCTTCATATCCACGAGGAAGCACGAAGAC 18044 Query 149523 ATTTGCG 149529 | ||||| Sbjct 18043 AGTTGCG 18037 >seq85 Length=66049 Score = 161 bits (178), Expect = 1e-34 Identities = 351/519 (68%), Gaps = 15/519 (3%) Strand=Plus/Minus Query 120354 GTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCAT 120413 ||| ||| |||| || ||||| || ||||| || ||||| | | ||| ||||| | ||| Sbjct 3499 GTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGCGAGATGTTCTCCAT 3440 Query 120414 AAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAGTCG 120473 ||| || || |||||||| || || || || | ||| | | || || || Sbjct 3439 AAAGTCAAAGGGGTTGCTGGCCTTGTAGACCTTGTCGTTGCCGAGGGCCATCAGGAGACG 3380 Query 120474 GTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCCAC 120533 ||| || ||||| |||||||| |||| | ||||||||||| |||| || Sbjct 3379 GTCGGCGACAAATTCAATGTAGGTCTTCATGAGGTCGGCGTTCATGCCAAGCAGGGCACA 3320 Query 120534 CGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGCGAG 120593 |||| ||| || || |||||||||||||| | || || || ||| ||| | Sbjct 3319 GGGCAGGGCCTCAGTCAAGAACTCCTTCTCAATAGCAACAGCATCGGTGATGATGTCCTC 3260 Query 120594 CAT-AGTG--TGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGCAAA 120650 || ||| | || ||| |||| | | || | || || |||||| ||||| Sbjct 3259 AATCAGTTGCTTGCTGGGGCGGTTGT-TAAGGTGGGAGT-----AGAGCAGGCAAGCAAA 3206 Query 120651 GTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCAT 120710 ||| ||||| |||||||| || || || |||||||||||| || ||||| || ||||| Sbjct 3205 GTCAGTGTGAAGGCCCTCATCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGCAT 3146 Query 120711 GATGCCTTTCGTCTTG---ATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCC 120767 || || || |||| | |||| |||| |||||| ||||| ||||| | || Sbjct 3145 GAGACC--ACG-CTTGCGCAGCCAGAAGATGGAGGCAAAAGCACCCGAGAAGAAGATACC 3089 Query 120768 CTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCA 120827 ||| || ||||||||| || | |||| ||| || || | | |||| | ||||||| Sbjct 3088 CTCGACAGCGGCAAAGGCAACGAGACGCTGGGCAAAGGTAGACTCCTTGTCGGCGATCCA 3029 Query 120828 CTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCAT 120866 ||||| |||||| || ||||| ||| | ||| || || Sbjct 3028 CTTCAGGGCCCAGTCAGCCTTGCGGCGAATGCAGGGAAT 2990 >seq30 Length=92847 Score = 123 bits (136), Expect = 2e-23 Identities = 142/189 (75%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || ||||| ||||| || ||||| || ||| || |||| |||||| |||||||||| Sbjct 12444 GTAGACTCCTTCTGAATGTTGTAGTCTGCCAGGGT--ACGACCGTCCTCCAGCTGCTTGC 12387 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| || ||||||||||| || ||||||||||||||||| ||||| || Sbjct 12386 CTGCGAAAATCAGGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGAATCTTGGACT 12327 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| ||||| | || ||| || || | ||||| ||| || ||||| || | Sbjct 12326 TGACATTGTCAATAGTGTCCGAGGACTCGACTTCTAGGGTGATGGTCTTTCCGGTGAGGG 12267 Query 133642 TTTTTACGA 133650 | || |||| Sbjct 12266 TCTTGACGA 12258 >seq169 Length=45351 Score = 113 bits (124), Expect = 4e-20 Identities = 141/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || ||| ||| | | | ||||| |||||||||| Sbjct 32245 GGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCA-TCCTCAAGCTGCTTGC 32303 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || || ||||||||||| || ||||| || |||||||| |||||| || Sbjct 32304 CAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGACT 32363 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | |||||| | || ||| || || | ||| | ||| || || ||||| | Sbjct 32364 TGACGTTGTCGATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGG 32423 Query 133642 TTTTTACGAAA 133652 | || |||||| Sbjct 32424 TCTTGACGAAA 32434 >seq59 Length=73848 Score = 109 bits (120), Expect = 5e-19 Identities = 139/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 133473 TTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAAAT 133531 ||||| |||||||| || ||| || | | | ||||| ||||||||||| || | || Sbjct 15446 TTCTGGATATTGTAGTCCGCCAGGGTACGGCCA-TCCTCCAGCTGCTTGCCAGCAAAGAT 15504 Query 133532 GAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTC 133591 || ||||||||||| ||||| ||||| |||||||| |||||| ||||| | || Sbjct 15505 CAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTC 15564 Query 133592 AACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAA 133651 | ||||| | || ||| || |||| ||| | || || || || || || || ||||| Sbjct 15565 GATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTTAGGGTCTTGACGAA 15624 Query 133652 AATCTGCAT 133660 ||||||||| Sbjct 15625 AATCTGCAT 15633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483413204250680