Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq54 114 3e-20 >seq54 Length=76171 Score = 114 bits (126), Expect = 3e-20 Identities = 455/709 (64%), Gaps = 19/709 (3%) Strand=Plus/Plus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 || ||||||||||| || ||||| ||| | || | || | | ||| ||||| | Sbjct 17832 TACTTTGGTTTCAAGACGCTTGAGCGTTCATACCTCCTGAAGCTTGACGGCAAGATCGTC 17891 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 || ||||||||||||||| | | |||||||| |||| || || ||||| || || Sbjct 17892 GAGCGTCCTCAACACATGATCATGCGTGTTGCTGTTGGAATCTGGGGTGATGATGTTGAA 17951 Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCA----TGCTACTCC 110479 ||| | || || | | | || | | ||| | |||| ||| | || Sbjct 17952 CGTGTCCTGGAGACCTACAACCTCAT--GTCGA--GCAAGTTCTTCACTCATGCATCCCC 18007 Query 110480 TACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAAT 110539 || || || ||||| || ||| | ||| || |||| ||||| || | | || Sbjct 18008 AACTCTTTTCAACGCCGGTACTCCCCAGGCGCAACTGTCTTCGTGCTTCCTCGTGGATAT 18067 Query 110540 TAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACT---GCTCTTATTTC 110596 || ||||| ||||| ||||| ||||| |||| ||| ||| ||| | || || Sbjct 18068 GAAGGATGACAGCATTGAGGGTATCTATGACACTCTGAAA---ACTTGCGCTATGATCTC 18124 Query 110597 TAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATAT 110656 || | | || || ||||| | |||| || ||||| | | || | | || Sbjct 18125 CAAGATGGCGGGTGGTATTGGCCTGAACGTGCACCGCATTCGTGCCACTGGTTCTTACAT 18184 Query 110657 CGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACAC 110716 || | || ||| | || | || | ||||| ||| | | || |||||| |||| Sbjct 18185 TGCCGGCACTAACGGTACCTCGAACGGTATCGTTCCTATGCTGCGTGTGTTCAACAACAC 18244 Query 110717 TGCAAAATATGTGAATCAAGGTGGTAAGA---GAAATGGCTCATTTGCTATCTATCTCGA 110773 ||| || || | || ||||| || | | ||| | ||||||||||| ||||| Sbjct 18245 TGCTCGTTACGTTGACCAGGGTGGCAACAAGCGTCCTGGTGCTTTTGCTATCTACCTCGA 18304 Query 110774 ACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGA 110833 || ||||| | ||| | ||||| ||| | || || || || ||||| || ||||| Sbjct 18305 GCCGTGGCACGCGGATGTTTTTGAGTTCCTCGATCTCCGCAAGAATCACGGCAAAGAAGA 18364 Query 110834 ACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGT 110893 | | || |||||| | || || ||||||| | ||| | |||||||| ||||| Sbjct 18365 AGTCCGTGCCCGTGATCTTTTCCTGGCTCTGTGGATCCCTGATCTTTTCATGAAGCGTGT 18424 Query 110894 TCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGA-TG 110952 | || | || | | |||| |||||||||| || || | |||||||| |||| || Sbjct 18425 TGAAAAGAACGCCGAGTGGACTCTTATGTGCCCCAATGAGTGCCCTGGTCTGGCTGACTG 18484 Query 110953 TATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGG 111001 | || || | ||||| || | | ||||| || |||||||| || || Sbjct 18485 T-TACGGCGATGAGTTCGAGGCATTGTACGAGAAGTATGAAAAGGAGGG 18532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186793686008977