Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq54 114 3e-20
>seq54
Length=76171
Score = 114 bits (126), Expect = 3e-20
Identities = 455/709 (64%), Gaps = 19/709 (3%)
Strand=Plus/Plus
Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363
|| ||||||||||| || ||||| ||| | || | || | | ||| ||||| |
Sbjct 17832 TACTTTGGTTTCAAGACGCTTGAGCGTTCATACCTCCTGAAGCTTGACGGCAAGATCGTC 17891
Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423
|| ||||||||||||||| | | |||||||| |||| || || ||||| || ||
Sbjct 17892 GAGCGTCCTCAACACATGATCATGCGTGTTGCTGTTGGAATCTGGGGTGATGATGTTGAA 17951
Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCA----TGCTACTCC 110479
||| | || || | | | || | | ||| | |||| ||| | ||
Sbjct 17952 CGTGTCCTGGAGACCTACAACCTCAT--GTCGA--GCAAGTTCTTCACTCATGCATCCCC 18007
Query 110480 TACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAAT 110539
|| || || ||||| || ||| | ||| || |||| ||||| || | | ||
Sbjct 18008 AACTCTTTTCAACGCCGGTACTCCCCAGGCGCAACTGTCTTCGTGCTTCCTCGTGGATAT 18067
Query 110540 TAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACT---GCTCTTATTTC 110596
|| ||||| ||||| ||||| ||||| |||| ||| ||| ||| | || ||
Sbjct 18068 GAAGGATGACAGCATTGAGGGTATCTATGACACTCTGAAA---ACTTGCGCTATGATCTC 18124
Query 110597 TAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATAT 110656
|| | | || || ||||| | |||| || ||||| | | || | | ||
Sbjct 18125 CAAGATGGCGGGTGGTATTGGCCTGAACGTGCACCGCATTCGTGCCACTGGTTCTTACAT 18184
Query 110657 CGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACAC 110716
|| | || ||| | || | || | ||||| ||| | | || |||||| ||||
Sbjct 18185 TGCCGGCACTAACGGTACCTCGAACGGTATCGTTCCTATGCTGCGTGTGTTCAACAACAC 18244
Query 110717 TGCAAAATATGTGAATCAAGGTGGTAAGA---GAAATGGCTCATTTGCTATCTATCTCGA 110773
||| || || | || ||||| || | | ||| | ||||||||||| |||||
Sbjct 18245 TGCTCGTTACGTTGACCAGGGTGGCAACAAGCGTCCTGGTGCTTTTGCTATCTACCTCGA 18304
Query 110774 ACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGA 110833
|| ||||| | ||| | ||||| ||| | || || || || ||||| || |||||
Sbjct 18305 GCCGTGGCACGCGGATGTTTTTGAGTTCCTCGATCTCCGCAAGAATCACGGCAAAGAAGA 18364
Query 110834 ACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGT 110893
| | || |||||| | || || ||||||| | ||| | |||||||| |||||
Sbjct 18365 AGTCCGTGCCCGTGATCTTTTCCTGGCTCTGTGGATCCCTGATCTTTTCATGAAGCGTGT 18424
Query 110894 TCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGA-TG 110952
| || | || | | |||| |||||||||| || || | |||||||| |||| ||
Sbjct 18425 TGAAAAGAACGCCGAGTGGACTCTTATGTGCCCCAATGAGTGCCCTGGTCTGGCTGACTG 18484
Query 110953 TATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGG 111001
| || || | ||||| || | | ||||| || |||||||| || ||
Sbjct 18485 T-TACGGCGATGAGTTCGAGGCATTGTACGAGAAGTATGAAAAGGAGGG 18532
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186793686008977
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |