Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq85 89.7 5e-13 >seq85 Length=66049 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 47058 ATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACAG 47117 || || |||||||| || |||| ||| |||||| ||| |||| ||||||||||| | Sbjct 3287 ATTGAGAAGGAGTTCTTGACTGAGGCCCTGCCCTGTGCCCTGCTTGGCATGAACGCCGAC 3346 Query 47118 TCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAACCG 47177 ||| || ||||| ||||| || || ||||| || || ||||| |||| Sbjct 3347 CTCATGAAGACCTACATTGAATTTGTCGCCGACCGTCTCCTGATGGCCCTCGG-CAACGA 3405 Query 47178 AAATAT-TTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAA 47236 || | | || || | || || ||||| |||||| | ||||| ||||| | ||||| Sbjct 3406 CAAGGTCTACAAGGCCAGCAACCCCTTTGACTTTATGGAGAACATCTCGCTTGGTGGCAA 3465 Query 47237 AACCAATTTTTTCGAGAAACGAGTCG 47262 ||||| || |||||||| || |||| Sbjct 3466 GACCAACTTCTTCGAGAAGCGTGTCG 3491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476603711246520