Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_026421.1
Length=182380
Score E
Sequences producing significant alignments: (Bits) Value
seq11 105 8e-18
>seq11
Length=131135
Score = 105 bits (116), Expect = 8e-18
Identities = 353/546 (65%), Gaps = 55/546 (10%)
Strand=Plus/Plus
Query 147001 GCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATG 147060
|||||||||| || ||||||||||| ||||| || ||||| || || |||| |||||
Sbjct 14718 GCCACCATGTGCGTCAGCAGCGAGTAACTGGCAATATTGAACGGCACACCCAACCCCATA 14777
Query 147061 TCCCCCGACCTCTGGTACAGCTGGCACGAGAG------------------CTCCCC---- 147098
|| | ||||| |||||||| || || || ||||||
Sbjct 14778 TCACACGACCGCTGGTACAATTGACAATGCAGTCTCCCCTTTGCCTTTTCCTCCCCCTTC 14837
Query 147099 ---GTCGGC--------CACGTAAAACTG-GCACAGGATGTGGCACGGCGGCAGCGCCAT 147146
||| || ||| |||||||| ||| | || || |||||||||| ||||||
Sbjct 14838 TTCGTCCGCGGGTAAGACACATAAAACTGCGCAAAC-ATATGACACGGCGGCAACGCCAT 14896
Query 147147 GGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCT 147206
|| ||||| || ||||| ||||| | | | ||||| | | |||||| |
Sbjct 14897 CTTCTTCAAATCCGCCGGATTCCACGCCGATAGTATGATCCGCCGGTCATACGGGTTCGT 14956
Query 147207 C-TTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCC 147265
| ||||| | | | | ||| | |||||| || || ||||| ||| ||| | |||
Sbjct 14957 CCTTAATTTGTGC-ACGACCTCCGCCAGCTGATCAACACCCTGCCCCGTGTAATCCGTCT 15015
Query 147266 -CGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGG 147324
|||| || || ||| ||| |||||||| | |||||| ||||| ||||| || |||| |
Sbjct 15016 GCGCA-TCAACATACTCGGCGCCAAAGTGACGCCACTGAAAGCCATACACAGGACCCAAG 15074
Query 147325 TCGCCG--GGCTTTCTGTGCGAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGG 147382
||||| ||| || ||||| || | | | ||| |||||| | || |||| |
Sbjct 15075 TCGCCAACGGCCCGGTGGCCGAGA--CCAACGCTGTCGAGGAACTCGCGAGAGCCGTTGC 15132
Query 147383 CGTCCCA------GATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCC 147436
||||||| |||||| || | || || ||| ||| ||| ||||
Sbjct 15133 CGTCCCATATTTTGATGCCGGCTGCGCTGAGGGGGAGG------GAGGAGGTGCTGCCCT 15186
Query 147437 GGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCA 147496
|||||||||||| || || | | || | | |||||| | |||||||| || |
Sbjct 15187 CGATGAACCAGAGGAGTTCGGCGATGACGGCGCGGGTAAAGACACGTTTGGTGGTGAGGA 15246
Query 147497 GGGGGA 147502
||||||
Sbjct 15247 GGGGGA 15252
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583478831944800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |