Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq11 105 8e-18 >seq11 Length=131135 Score = 105 bits (116), Expect = 8e-18 Identities = 353/546 (65%), Gaps = 55/546 (10%) Strand=Plus/Plus Query 147001 GCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATG 147060 |||||||||| || ||||||||||| ||||| || ||||| || || |||| ||||| Sbjct 14718 GCCACCATGTGCGTCAGCAGCGAGTAACTGGCAATATTGAACGGCACACCCAACCCCATA 14777 Query 147061 TCCCCCGACCTCTGGTACAGCTGGCACGAGAG------------------CTCCCC---- 147098 || | ||||| |||||||| || || || |||||| Sbjct 14778 TCACACGACCGCTGGTACAATTGACAATGCAGTCTCCCCTTTGCCTTTTCCTCCCCCTTC 14837 Query 147099 ---GTCGGC--------CACGTAAAACTG-GCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 ||| || ||| |||||||| ||| | || || |||||||||| |||||| Sbjct 14838 TTCGTCCGCGGGTAAGACACATAAAACTGCGCAAAC-ATATGACACGGCGGCAACGCCAT 14896 Query 147147 GGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCT 147206 || ||||| || ||||| ||||| | | | ||||| | | |||||| | Sbjct 14897 CTTCTTCAAATCCGCCGGATTCCACGCCGATAGTATGATCCGCCGGTCATACGGGTTCGT 14956 Query 147207 C-TTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCC 147265 | ||||| | | | | ||| | |||||| || || ||||| ||| ||| | ||| Sbjct 14957 CCTTAATTTGTGC-ACGACCTCCGCCAGCTGATCAACACCCTGCCCCGTGTAATCCGTCT 15015 Query 147266 -CGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGG 147324 |||| || || ||| ||| |||||||| | |||||| ||||| ||||| || |||| | Sbjct 15016 GCGCA-TCAACATACTCGGCGCCAAAGTGACGCCACTGAAAGCCATACACAGGACCCAAG 15074 Query 147325 TCGCCG--GGCTTTCTGTGCGAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGG 147382 ||||| ||| || ||||| || | | | ||| |||||| | || |||| | Sbjct 15075 TCGCCAACGGCCCGGTGGCCGAGA--CCAACGCTGTCGAGGAACTCGCGAGAGCCGTTGC 15132 Query 147383 CGTCCCA------GATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCC 147436 ||||||| |||||| || | || || ||| ||| ||| |||| Sbjct 15133 CGTCCCATATTTTGATGCCGGCTGCGCTGAGGGGGAGG------GAGGAGGTGCTGCCCT 15186 Query 147437 GGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCA 147496 |||||||||||| || || | | || | | |||||| | |||||||| || | Sbjct 15187 CGATGAACCAGAGGAGTTCGGCGATGACGGCGCGGGTAAAGACACGTTTGGTGGTGAGGA 15246 Query 147497 GGGGGA 147502 |||||| Sbjct 15247 GGGGGA 15252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583478831944800