Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq85 235 8e-56
seq184 109 8e-18
seq54 102 1e-15
>seq85
Length=66049
Score = 235 bits (260), Expect = 8e-56
Identities = 401/572 (70%), Gaps = 22/572 (4%)
Strand=Plus/Plus
Query 1455715 CGAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCG 1455774
||| || || |||| || ||||| |||||||| || || ||||||||| |||||
Sbjct 2596 CGAACCCCTTCTGCAGGAGAACCCTAACCGCTTCGTGCTCTTCCCCATCAAGTACCACGA 2655
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| |||||||| || ||||||||||| || || ||||||||||||||| | || |
Sbjct 2656 GATCTGGCAAATGTAC-AAGAAGGCCGAGGCTTCTTTCTGGACCGCCGAGGAGATTGATC 2714
Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTC 1455887
| | || |||| ||||| ||| ||| | | ||||||| ||
Sbjct 2715 TGTCCAAGGATCTCCACG----ACTGGAACAACCGCATGAACAAAGACGAGCAGTTCTTT 2770
Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947
||| ||| |||| || || ||| |||||| || || ||||| ||||||| |||
Sbjct 2771 ATCTCCCACATCCTGGCTTTCTTT-GCCGCCTCTGACGGTATCGTCAACGAGAACTTGGT 2829
Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007
| || || |||||||| | || ||||| || | ||||| || ||||||||
Sbjct 2830 TGAGCGTTTCTCCGCCGAGGTCCAGATTCCCGAGGCCCGCTGCTTTTATGGTTTCCAGAT 2889
Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067
| || |||||||| ||||| || ||||||||||| || || || |||||| |||||||
Sbjct 2890 CATGATGGAAAACATTCACTCCGAGACCTACTCGCTGCTCATTGATACCTACATCAAGGA 2949
Query 1456068 CCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAA 1456127
|| | | || | |||| || |||||| || || | || | | | ||
Sbjct 2950 GCCCGCCCAGCGTTCCTACCTGTTCAACGCCATTGATACTATTCCCTGCATTCGCCGCAA 3009
Query 1456128 GGCCGACTGGGCGATGAAGTGGAT---CAACAAGGAGGGCCTCGACACTTTGCCGAGCGG 1456184
||| |||||||| |||||||||| | |||||||| || || ||||||| ||||
Sbjct 3010 GGCTGACTGGGCCCTGAAGTGGATCGCCGACAAGGAG----TCTAC-CTTTGCCCAGCGT 3064
Query 1456185 CTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTT 1456243
||||| | ||||||||| |||||||| ||||| |||||||| ||| | |||||||
Sbjct 3065 CTCGTTGCCTTTGCCGCTGTCGAGGGTATCTTCTTCTCGGGTGCTTTTGCCTCCATCTTC 3124
Query 1456244 TGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
||||| ||||| || |||||||| |||||
Sbjct 3125 TGGCTGCGCAAGCGTGGTCTCATGCCTGGTCT 3156
Score = 93.3 bits (102), Expect = 6e-13
Identities = 175/252 (69%), Gaps = 4/252 (2%)
Strand=Plus/Plus
Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582
|||||| ||| || || | || ||||| ||||| | | ||| | ||||| ||
Sbjct 3266 ATCATCACCGATGCTGTTGCTATTGAGAAGGAGTTCTTGACTGAGGCCCTGCCCTGTGCC 3325
Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642
|| | |||||||||||| | |||||| |||||||||||| ||||||||||| |
Sbjct 3326 CTGCTTGGCATGAACGCCGAC-CTCATGAAGACCTACATTGAATTT-GTCGCCGACCGTC 3383
Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702
| || ||| |||||| || | ||| |||| | | |||||| || | |||
Sbjct 3384 TCCTGATGGCCCTCGGCAACG-ACAAGGTCTACAAGGCCAGCAACCCCTTTGACTTTATG 3442
Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCC 1456761
||| |||||||| | |||||||||||||| |||||| || || | ||| |||
Sbjct 3443 GAGAACATCTCGCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGCCGACTACCAA 3502
Query 1456762 AAGGCCGGCGTC 1456773
|||||||| |||
Sbjct 3503 AAGGCCGGTGTC 3514
>seq184
Length=42538
Score = 109 bits (120), Expect = 8e-18
Identities = 126/170 (74%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 332876 CGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTGCAGGCC 332935
|| ||||||||||||||| ||||||| |||||||| | || |||||||||
Sbjct 20449 CGGAGGATGGCACAACGGGATTGCAGGGGCTCGATGATTTTGTTGGATTGGTTGCAGGCA 20390
Query 332936 AGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTGGGCC 332995
| ||| || || || || |||| | |||||||||| |||||||| ||||||||
Sbjct 20389 AAGGCGAAGCGGGTGGTGTTGGAGTAGATTTCCATGGTGCGGCGGAGGGCTTGTTGGGCG 20330
Query 332996 GCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCC 333045
||| || | || |||||| || ||||||||||||| |||||||| ||
Sbjct 20329 CCCGAGGTCATGCTGTCGGCTTCATCGAGGATGATGAGTTTGTGGCGGCC 20280
>seq54
Length=76171
Score = 102 bits (112), Expect = 1e-15
Identities = 262/394 (66%), Gaps = 19/394 (5%)
Strand=Plus/Plus
Query 259791 TCGTCGAGCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCG 259850
|||||||||| || || | ||| |||||||||| || |||| | | |||| | | |
Sbjct 17887 TCGTCGAGCGTCCTCAACACATGATCATGCGTGTTGCTGTTGG--AATCTGGGGT-GATG 17943
Query 259851 ACGTCGACAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTG 259909
| || || || |||||| |||||| | ||||||| |||| |||
Sbjct 17944 ATGTTGAACGTGTCCTGGAG------------ACCTACAACCTCATGTCG-AGCAAGTTC 17990
Query 259910 TTCACCTCA-GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTC 259968
||||| ||| || | || || || || || ||||| || || | |||| || ||
Sbjct 17991 TTCAC-TCATGCATCCCCAACTCTTTTCAACGCCGGTACTCCCCAGGCGCAACTGTCTTC 18049
Query 259969 GTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCA 260028
|||||| || |||| ||||||| || || ||||| ||||||||||| || ||
Sbjct 18050 GTGCTTCCTCGTGGATATGAAGGATGACAGCATTGAGGGTATCTATGACACTCTGAAAAC 18109
Query 260029 GTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGC 260088
||||| | ||||||||| ||| || || || || | || ||| | || ||
Sbjct 18110 TTGCGCTATGATCTCCAAGATGGCGGGTGGTATTGGCCTGAACGTGCACCGCATTCGTGC 18169
Query 260089 CGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCG 260148
| | || | ||| | || ||||| ||||| || ||||| | || || ||||| ||
Sbjct 18170 CACTGGTTCTTACATTGCCGGCACTAACGGTACCTCGAACGGTATCGTTCCTATGCTGCG 18229
Query 260149 CGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182
|| || ||| |||| || || ||||| ||||||
Sbjct 18230 TGTGTTCAACAACACTGCTCGTTACGTTGACCAG 18263
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177689960039634
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |