Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq85 235 8e-56 seq184 109 8e-18 seq54 102 1e-15 >seq85 Length=66049 Score = 235 bits (260), Expect = 8e-56 Identities = 401/572 (70%), Gaps = 22/572 (4%) Strand=Plus/Plus Query 1455715 CGAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCG 1455774 ||| || || |||| || ||||| |||||||| || || ||||||||| ||||| Sbjct 2596 CGAACCCCTTCTGCAGGAGAACCCTAACCGCTTCGTGCTCTTCCCCATCAAGTACCACGA 2655 Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||||||||| || || ||||||||||||||| | || | Sbjct 2656 GATCTGGCAAATGTAC-AAGAAGGCCGAGGCTTCTTTCTGGACCGCCGAGGAGATTGATC 2714 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTC 1455887 | | || |||| ||||| ||| ||| | | ||||||| || Sbjct 2715 TGTCCAAGGATCTCCACG----ACTGGAACAACCGCATGAACAAAGACGAGCAGTTCTTT 2770 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| ||| |||| || || ||| |||||| || || ||||| ||||||| ||| Sbjct 2771 ATCTCCCACATCCTGGCTTTCTTT-GCCGCCTCTGACGGTATCGTCAACGAGAACTTGGT 2829 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 | || || |||||||| | || ||||| || | ||||| || |||||||| Sbjct 2830 TGAGCGTTTCTCCGCCGAGGTCCAGATTCCCGAGGCCCGCTGCTTTTATGGTTTCCAGAT 2889 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 | || |||||||| ||||| || ||||||||||| || || || |||||| ||||||| Sbjct 2890 CATGATGGAAAACATTCACTCCGAGACCTACTCGCTGCTCATTGATACCTACATCAAGGA 2949 Query 1456068 CCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAA 1456127 || | | || | |||| || |||||| || || | || | | | || Sbjct 2950 GCCCGCCCAGCGTTCCTACCTGTTCAACGCCATTGATACTATTCCCTGCATTCGCCGCAA 3009 Query 1456128 GGCCGACTGGGCGATGAAGTGGAT---CAACAAGGAGGGCCTCGACACTTTGCCGAGCGG 1456184 ||| |||||||| |||||||||| | |||||||| || || ||||||| |||| Sbjct 3010 GGCTGACTGGGCCCTGAAGTGGATCGCCGACAAGGAG----TCTAC-CTTTGCCCAGCGT 3064 Query 1456185 CTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTT 1456243 ||||| | ||||||||| |||||||| ||||| |||||||| ||| | ||||||| Sbjct 3065 CTCGTTGCCTTTGCCGCTGTCGAGGGTATCTTCTTCTCGGGTGCTTTTGCCTCCATCTTC 3124 Query 1456244 TGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||| ||||| || |||||||| ||||| Sbjct 3125 TGGCTGCGCAAGCGTGGTCTCATGCCTGGTCT 3156 Score = 93.3 bits (102), Expect = 6e-13 Identities = 175/252 (69%), Gaps = 4/252 (2%) Strand=Plus/Plus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||| ||| || || | || ||||| ||||| | | ||| | ||||| || Sbjct 3266 ATCATCACCGATGCTGTTGCTATTGAGAAGGAGTTCTTGACTGAGGCCCTGCCCTGTGCC 3325 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 || | |||||||||||| | |||||| |||||||||||| ||||||||||| | Sbjct 3326 CTGCTTGGCATGAACGCCGAC-CTCATGAAGACCTACATTGAATTT-GTCGCCGACCGTC 3383 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 | || ||| |||||| || | ||| |||| | | |||||| || | ||| Sbjct 3384 TCCTGATGGCCCTCGGCAACG-ACAAGGTCTACAAGGCCAGCAACCCCTTTGACTTTATG 3442 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCC 1456761 ||| |||||||| | |||||||||||||| |||||| || || | ||| ||| Sbjct 3443 GAGAACATCTCGCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGCCGACTACCAA 3502 Query 1456762 AAGGCCGGCGTC 1456773 |||||||| ||| Sbjct 3503 AAGGCCGGTGTC 3514 >seq184 Length=42538 Score = 109 bits (120), Expect = 8e-18 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 332876 CGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTGCAGGCC 332935 || ||||||||||||||| ||||||| |||||||| | || ||||||||| Sbjct 20449 CGGAGGATGGCACAACGGGATTGCAGGGGCTCGATGATTTTGTTGGATTGGTTGCAGGCA 20390 Query 332936 AGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTGGGCC 332995 | ||| || || || || |||| | |||||||||| |||||||| |||||||| Sbjct 20389 AAGGCGAAGCGGGTGGTGTTGGAGTAGATTTCCATGGTGCGGCGGAGGGCTTGTTGGGCG 20330 Query 332996 GCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCC 333045 ||| || | || |||||| || ||||||||||||| |||||||| || Sbjct 20329 CCCGAGGTCATGCTGTCGGCTTCATCGAGGATGATGAGTTTGTGGCGGCC 20280 >seq54 Length=76171 Score = 102 bits (112), Expect = 1e-15 Identities = 262/394 (66%), Gaps = 19/394 (5%) Strand=Plus/Plus Query 259791 TCGTCGAGCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCG 259850 |||||||||| || || | ||| |||||||||| || |||| | | |||| | | | Sbjct 17887 TCGTCGAGCGTCCTCAACACATGATCATGCGTGTTGCTGTTGG--AATCTGGGGT-GATG 17943 Query 259851 ACGTCGACAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTG 259909 | || || || |||||| |||||| | ||||||| |||| ||| Sbjct 17944 ATGTTGAACGTGTCCTGGAG------------ACCTACAACCTCATGTCG-AGCAAGTTC 17990 Query 259910 TTCACCTCA-GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTC 259968 ||||| ||| || | || || || || || ||||| || || | |||| || || Sbjct 17991 TTCAC-TCATGCATCCCCAACTCTTTTCAACGCCGGTACTCCCCAGGCGCAACTGTCTTC 18049 Query 259969 GTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCA 260028 |||||| || |||| ||||||| || || ||||| ||||||||||| || || Sbjct 18050 GTGCTTCCTCGTGGATATGAAGGATGACAGCATTGAGGGTATCTATGACACTCTGAAAAC 18109 Query 260029 GTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGC 260088 ||||| | ||||||||| ||| || || || || | || ||| | || || Sbjct 18110 TTGCGCTATGATCTCCAAGATGGCGGGTGGTATTGGCCTGAACGTGCACCGCATTCGTGC 18169 Query 260089 CGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCG 260148 | | || | ||| | || ||||| ||||| || ||||| | || || ||||| || Sbjct 18170 CACTGGTTCTTACATTGCCGGCACTAACGGTACCTCGAACGGTATCGTTCCTATGCTGCG 18229 Query 260149 CGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 || || ||| |||| || || ||||| |||||| Sbjct 18230 TGTGTTCAACAACACTGCTCGTTACGTTGACCAG 18263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177689960039634