Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq30 140 3e-28 seq169 105 7e-18 >seq30 Length=92847 Score = 140 bits (154), Expect = 3e-28 Identities = 142/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || ||||| ||||| |||||||||||||| ||| |||| || ||| || Sbjct 12139 ACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGCAAGGGTGCGACCGTCTTCA 12080 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| || || |||||||| | |||||||||||| || || || || || || |||||| Sbjct 12079 AGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTATCTTGA 12020 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || |||||| ||| | ||||| |||||||| || ||||| || ||||| || Sbjct 12019 ATCTTGGATTTGACGTTGTCGATGGTGTCTGACGATTCAACCTCGAGGGTGATGGTCTTG 11960 Query 134685 CCGGT 134689 || || Sbjct 11959 CCAGT 11955 Score = 122 bits (134), Expect = 9e-23 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||||| || || || || ||||| |||||||||||||| | Sbjct 12474 CCACCACGGAGACGAAGAACGAGATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCTGCC 12415 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || ||| || ||||| |||||||| ||||||| |||||||| || || || Sbjct 12414 AGGGTACGACCGTCCTCCAGCTGCTTGCCTGCGAAAATCAGGCGCTGCTGGTCAGGGGGG 12355 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || ||||| || ||||| ||| | ||||| || || || || Sbjct 12354 ATGCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATAGTGTCCGAGGACTCGACT 12295 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 || || || ||||| || ||||| | || || |||| Sbjct 12294 TCTAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGA 12258 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || || || || || || ||||| || ||||||||||| | | ||| || ||| || Sbjct 12684 ACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTACGACCGTCTTCA 12625 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| || || |||||||| | |||||||||||| || || ||||| || || || ||| Sbjct 12624 AGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGA 12565 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| ||| | ||||| || | || || || || |||||||| || Sbjct 12564 ATCTTGGACTTGACATTGTCAATAGTGTCCGAGGTCTCAACCTCCAGGGTAATGGTCTTG 12505 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | ||| || || || |||||||| Sbjct 12504 CCAGTCAGAGTCTTGACAAAGATTTGCAT 12476 >seq169 Length=45351 Score = 105 bits (116), Expect = 7e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || ||||| ||||| || ||||||||||| | | |||| | || || Sbjct 32234 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCA 32293 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| ||||| |||| |||||||| || || || || || || || || || Sbjct 32294 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGG 32353 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| ||| | ||||| || || || || || || |||||||| ||| Sbjct 32354 ATCTTGGACTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTA 32413 Query 134685 CCGGTTAAAGTTTTAACGAAA 134705 || || | || || |||||| Sbjct 32414 CCCGTCAGGGTCTTGACGAAA 32434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505390458927640