Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq85 114 2e-20
>seq85
Length=66049
Score = 114 bits (126), Expect = 2e-20
Identities = 364/562 (65%), Gaps = 8/562 (1%)
Strand=Plus/Minus
Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675
||| || |||||| || ||||||||||| | || | ||||| || || || ||
Sbjct 3214 GCAAGCAAAGTCAGTGTGAAGGCCCTCATCACGGGAGATCAGCTCGTTGGAGAAGGTCAG 3155
Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735
|||||||| ||||||||||| ||||| || |||| ||||||| || || |||||
Sbjct 3154 ACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCAAAAGCACCCGAGAAGAA 3095
Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT---G 39792
||| || || || || ||||| ||||| || | || | | | | || || |
Sbjct 3094 GATACCCTCGACAGCGGCAAAGGCAACGAGACGCTGGGCAAAGGTAGACTCCTTGTCGGC 3035
Query 39793 TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852
||||||||| | ||||| ||||| || | || || || || || || || ||
Sbjct 3034 GATCCACTTCAGGGCCCAGTCAGCCTTGCGGCGAATGCAGGGAATAGTATCAATGGCGTT 2975
Query 39853 AAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACAT 39912
|| || || | | || || | || ||||| || | ||| || |
Sbjct 2974 GAACAGGTAGGAACGCTGGGCGGGCTCCTTGATGTAGGTATCAATGAGCAGCGAGTAGGT 2915
Query 39913 TTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 39972
|| || || |||||||| ||| ||||| || || ||||| || | || || | |||
Sbjct 2914 CTCGGAGTGAATGTTTTCCATCATGATCTGGAAACCATAAAAGCAGCGGGCCTCGGGAAT 2855
Query 39973 TTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGC 40032
|| ||||| | | || | || |||| || || || || || || ||| |||||
Sbjct 2854 CTGGACCTCGGCGGAGAAACGCTCAACCAAGTTCTCGTTGACGATACCGTCAGAGGCGGC 2795
Query 40033 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAAT----TTATTCC 40088
||| || |||| | || ||||| | | || || ||| || || ||||
Sbjct 2794 AAAGAAAGCCAGGATGTGGGAGATAAAGAACTGCTCGTC-TTTGTTCATGCGGTTGTTCC 2736
Query 40089 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148
|||| | || ||| || || | ||| | || || || ||||| || || ||||| ||||
Sbjct 2735 AGTCGTGGAGATCCTTGGACAGATCAATCTCCTCGGCGGTCCAGAAAGAAGCCTCGGCCT 2676
Query 40149 TTTTGTACATGTTCCATATATC 40170
| |||||||| | ||| || ||
Sbjct 2675 TCTTGTACATTTGCCAGATCTC 2654
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686898006945480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |