Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq85 107 2e-18 >seq85 Length=66049 Score = 107 bits (118), Expect = 2e-18 Identities = 382/583 (66%), Gaps = 23/583 (4%) Strand=Plus/Plus Query 43717 TCAA-TATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAG 43775 |||| || || || || |||||||||||||| || || |||| || || ||||| || | Sbjct 2643 TCAAGTACCACGAGATCTGGCAAATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCCG 2702 Query 43776 AAGAAGTTGATTTGACTAAAGACTTAGCAC-ATTGGATT----GCATTAA-AACCACAAG 43829 | || ||||| || | || || | ||| | |||| |||| || || || || Sbjct 2703 AGGAGATTGATCTGTCCAAGGATCTC-CACGACTGGAACAACCGCATGAACAAAGACGAG 2761 Query 43830 AAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATG 43889 | | ||||| || | |||| || ||||| || ||||| || ||||| | Sbjct 2762 CAGTTC--TTTATCTCCCACATCCTGGCTTTCTTTGCCGCCTCTGACGGTATCGTCAACG 2819 Query 43890 AAAATTTGGTTAGTCGGTT-TGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTAT 43948 | || |||||| || || | ||| || || || | || || || || || |||||| Sbjct 2820 AGAACTTGGTTGAGCGTTTCTCCGCC-GAGGTCCAGATTCCCGAGGCCCGCTGCTTTTAT 2878 Query 43949 GGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACG 44008 || || || || || ||||| ||||| || || | ||| || || || ||||| Sbjct 2879 GGTTTCCAGATCATGATGGAAAACATTCACTCCGAGACCTACTCGCTGCTCATTGATACC 2938 Query 44009 TACATCAAAGATGGGCACGAGAAGCATCGAT---TGTTTAATGCGATAGAAAC-AGTACC 44064 |||||||| || || || ||| | | |||| || || || || || | | || Sbjct 2939 TACATCAAGGA---GCCCGCCCAGCGTTCCTACCTGTTCAACGCCATTGATACTATTCCC 2995 Query 44065 TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCT---TT 44121 ||| ||| | || || ||||||||||| || ||||| || || ||| || Sbjct 2996 TGC-ATTCGCCGCAAGGCTGACTGGGCCCTGAAGTGGATCGCCGACAAGGAGTCTACCTT 3054 Query 44122 TGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGC 44181 || | || || || || ||||| | ||| || || || ||||| || || | ||||| Sbjct 3055 TGCCCAGCGTCTCGTTGCCTTTGCCGCTGTCGAGGGTATCTTCTTCTCGGGTGCTTTTGC 3114 Query 44182 GGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTT 44241 |||| || ||| | || || ||| | |||||||| |||| || || || ||| | Sbjct 3115 CTCCATCTTCTGGCTGCGCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCT 3174 Query 44242 AATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 || |||||||| ||| | || || ||||||||| || Sbjct 3175 GATCTCCCGTGATGAGGGCCTTCACACTGACTTTGCTTGCCTG 3217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397449911098285