Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq30 118 9e-22
>seq30
Length=92847
Score = 118 bits (130), Expect = 9e-22
Identities = 152/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
|||| ||| | ||||| || || || || |||||||| || | | || |||||||
Sbjct 12684 ACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTACGACCGTCTTCA 12625
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
||||| || || || ||||||||||||| |||||||| || | ||||| || ||
Sbjct 12624 AGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGA 12565
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
|||||| || | | || | |||||| | || ||||| || || || || | |||
Sbjct 12564 ATCTTGGACTTGACATTGTCAATAGTGTCCGAGGTCTCAACCTCCAGGGTAATGGTCTTG 12505
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| |||||||| || |||||||||||||||
Sbjct 12504 CCAGTCAGAGTCTTGACAAAGATTTGCATA 12475
Score = 96.9 bits (106), Expect = 3e-15
Identities = 125/173 (72%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || || ||||| |||||||| | | |||| ||||||| ||||| || ||
Sbjct 12127 GTGGACTCCTTCTGAATGTTGTAGTCCGCAAGGGTGCGACCGTCTTCAAGCTGCTTTCCA 12068
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
|| ||||||||||||| |||||||| || | |||||| ||||| |||||| |||
Sbjct 12067 GCAAAAATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTATCTTGAATCTTGGATTTG 12008
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223
| | | || | ||||||| | |||||| || || || || | ||||| ||
Sbjct 12007 ACGTTGTCGATGGTGTCTGACGATTCAACCTCGAGGGTGATGGTCTTGCCAGT 11955
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424927890137784
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |