Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq85 111 5e-19 >seq85 Length=66049 Score = 111 bits (122), Expect = 5e-19 Identities = 406/616 (66%), Gaps = 25/616 (4%) Strand=Plus/Plus Query 443271 CGGTTCGTCTTGTTCCCCGTTCAGCATCCCGACATCTACGACATGTACAA-ACGACAAGT 443329 || ||||| | |||||| | || | | ||| |||| | |||||||| | | | | Sbjct 2624 CGCTTCGTGCTCTTCCCCATCAAGTACCACGAGATCTGGCAAATGTACAAGAAGGCC-GA 2682 Query 443330 GGCCCAGTTTTGGACCATGGAGGAGATTGATCTCTCCAAGGACTTGGCCGATTGGAACGA 443389 ||| || |||||| |||||||||||||| |||||||| | ||| |||||| | Sbjct 2683 GGCTTCTTTCTGGACCGCCGAGGAGATTGATCTGTCCAAGGATCTCCACGACTGGAACAA 2742 Query 443390 ACGACTATCTAGCCATGAACGCG-ATTTCTTCAAATGC---ATCTTGGCCTTCTTTGCAC 443445 || | | | | || || | | ||||| | | | ||| |||| |||||||| Sbjct 2743 CCGCATG---AACAAAGA-CGAGCAGTTCTTTATCTCCCACATCCTGGCTTTCTTTGCCG 2798 Query 443446 CGAGCGACGGTATCGTCGGTGAGAATCTGGTGACGCGTTTCTACGAAATGGTAGTGTACA 443505 | |||||||||||| ||||| |||| |||||||| || ||| | Sbjct 2799 CCTCTGACGGTATCGTCAACGAGAACTTGGTTGAGCGTTTCTCCGCCGAGGTCCAGATTC 2858 Query 443506 CCGAGGCCCGCTACTTCTACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCT 443565 |||||||||||| ||| || | ||||| | ||||| ||||||||| ||||| || Sbjct 2859 CCGAGGCCCGCTGCTTTTATGGTTTCCAGATCATGATGGAAAACATTCACTCCGAGACCT 2918 Query 443566 ACAGTCAGTTGATCAAGACACTAATTCCGAACGAAGACGAACAGCGGTCC-ATCTTCTCA 443624 || | | | || | || ||| || || || || ||||| ||| | || ||| Sbjct 2919 ACTCGCTGCTCATTGATAC-CTACATC--AAGGAGCCCGCCCAGCGTTCCTACCTGTTCA 2975 Query 443625 TCG---TTCATGACCACGCCAGGCAT-CACTGAAAAGACTCGCTGGGCAAAACAGTGGCT 443680 || || || || | || |||| | | | || | || |||||| ||||| | Sbjct 2976 ACGCCATTGAT-ACTATTCCCTGCATTCGCCGCAAGG-CTGACTGGGCCCTGAAGTGGAT 3033 Query 443681 CGAACGAGAA--AATCTCAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGA 443738 || ||| || | ||| | ||| | | |||| || || || ||||| | ||||| || Sbjct 3034 CGC-CGACAAGGAGTCT-ACCTTTGCCCAGCGTCTCGTTGCCTTTGCCGCTGTCGAGGGT 3091 Query 443739 CTGTTGTTTAGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCA 443798 | || || ||| ||||| ||||||||||||||| || |||||||| || |||| Sbjct 3092 ATCTTCTTCT-CGGGTGCTTTTGCCTCCATCTTCTGGCTGCGCAAGCGTGGTCTCATGCC 3150 Query 443799 CGGTCTGACCTTTAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGC 443858 ||||||||||| ||||| |||||| || || ||||| | || ||||| || Sbjct 3151 TGGTCTGACCTTCTCCAACGAGCTGATCTCCCGTGATGAGGGCCTTCACACTGACTTTGC 3210 Query 443859 CTGTCTTCTCTACACC 443874 || || |||||| || Sbjct 3211 TTGCCTGCTCTACTCC 3226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588310419352365