Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_027925.1
Length=496396
Score E
Sequences producing significant alignments: (Bits) Value
seq85 111 5e-19
>seq85
Length=66049
Score = 111 bits (122), Expect = 5e-19
Identities = 406/616 (66%), Gaps = 25/616 (4%)
Strand=Plus/Plus
Query 443271 CGGTTCGTCTTGTTCCCCGTTCAGCATCCCGACATCTACGACATGTACAA-ACGACAAGT 443329
|| ||||| | |||||| | || | | ||| |||| | |||||||| | | | |
Sbjct 2624 CGCTTCGTGCTCTTCCCCATCAAGTACCACGAGATCTGGCAAATGTACAAGAAGGCC-GA 2682
Query 443330 GGCCCAGTTTTGGACCATGGAGGAGATTGATCTCTCCAAGGACTTGGCCGATTGGAACGA 443389
||| || |||||| |||||||||||||| |||||||| | ||| |||||| |
Sbjct 2683 GGCTTCTTTCTGGACCGCCGAGGAGATTGATCTGTCCAAGGATCTCCACGACTGGAACAA 2742
Query 443390 ACGACTATCTAGCCATGAACGCG-ATTTCTTCAAATGC---ATCTTGGCCTTCTTTGCAC 443445
|| | | | | || || | | ||||| | | | ||| |||| ||||||||
Sbjct 2743 CCGCATG---AACAAAGA-CGAGCAGTTCTTTATCTCCCACATCCTGGCTTTCTTTGCCG 2798
Query 443446 CGAGCGACGGTATCGTCGGTGAGAATCTGGTGACGCGTTTCTACGAAATGGTAGTGTACA 443505
| |||||||||||| ||||| |||| |||||||| || ||| |
Sbjct 2799 CCTCTGACGGTATCGTCAACGAGAACTTGGTTGAGCGTTTCTCCGCCGAGGTCCAGATTC 2858
Query 443506 CCGAGGCCCGCTACTTCTACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCT 443565
|||||||||||| ||| || | ||||| | ||||| ||||||||| ||||| ||
Sbjct 2859 CCGAGGCCCGCTGCTTTTATGGTTTCCAGATCATGATGGAAAACATTCACTCCGAGACCT 2918
Query 443566 ACAGTCAGTTGATCAAGACACTAATTCCGAACGAAGACGAACAGCGGTCC-ATCTTCTCA 443624
|| | | | || | || ||| || || || || ||||| ||| | || |||
Sbjct 2919 ACTCGCTGCTCATTGATAC-CTACATC--AAGGAGCCCGCCCAGCGTTCCTACCTGTTCA 2975
Query 443625 TCG---TTCATGACCACGCCAGGCAT-CACTGAAAAGACTCGCTGGGCAAAACAGTGGCT 443680
|| || || || | || |||| | | | || | || |||||| ||||| |
Sbjct 2976 ACGCCATTGAT-ACTATTCCCTGCATTCGCCGCAAGG-CTGACTGGGCCCTGAAGTGGAT 3033
Query 443681 CGAACGAGAA--AATCTCAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGA 443738
|| ||| || | ||| | ||| | | |||| || || || ||||| | ||||| ||
Sbjct 3034 CGC-CGACAAGGAGTCT-ACCTTTGCCCAGCGTCTCGTTGCCTTTGCCGCTGTCGAGGGT 3091
Query 443739 CTGTTGTTTAGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCA 443798
| || || ||| ||||| ||||||||||||||| || |||||||| || ||||
Sbjct 3092 ATCTTCTTCT-CGGGTGCTTTTGCCTCCATCTTCTGGCTGCGCAAGCGTGGTCTCATGCC 3150
Query 443799 CGGTCTGACCTTTAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGC 443858
||||||||||| ||||| |||||| || || ||||| | || ||||| ||
Sbjct 3151 TGGTCTGACCTTCTCCAACGAGCTGATCTCCCGTGATGAGGGCCTTCACACTGACTTTGC 3210
Query 443859 CTGTCTTCTCTACACC 443874
|| || |||||| ||
Sbjct 3211 TTGCCTGCTCTACTCC 3226
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1588310419352365
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |