Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq54 152 6e-32 seq368 132 6e-26 seq85 113 6e-20 >seq54 Length=76171 Score = 152 bits (168), Expect = 6e-32 Identities = 935/1475 (63%), Gaps = 59/1475 (4%) Strand=Plus/Minus Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765 |||| ||||| | ||||| || || |||||||| ||||| |||| || || | || Sbjct 19278 GGTAAATGTTGGAGGTGTAGGGCTCGAAGCATTCGTTATTGCCCAGAATCTGGGAAGTAC 19219 Query 110766 AGGCTGTTGGCATTGGTGCCATCA--AAAGACTGTTACGAAGACCCTTCTCCTTGATGCG 110823 ||| || ||||| || || | | ||||| ||| || | ||| | || |||||| | Sbjct 19218 TGGCGGTGGGCATGGGCGCAAGTAGTAAAGA--GTTGCGGATACCGTGCTGCTTGATCTG 19161 Query 110824 TTCCTTGAGAACATCCCAGTCGTAGTTGAG-CTTGGTTTCACCTTCCCACATGTCAAACT 110882 |||||| || |||||| || | || || | || |||| |||||||||||| Sbjct 19160 TTCCTTCAGTGAGGTCCAGTCCCAGAGGTCACTGGGAGTGACATTCC-ACATGTCAAACT 19102 Query 110883 GAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAG 110942 | || | || |||||| | || || ||||| |||| || || | |||| | Sbjct 19101 GCAGGATGCCCTGGGACACAGGCGAGCCCTCGTAGGTCGAGTACTTGCCCTC--CTTCTG 19044 Query 110943 C-CAAT-TCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATT 111000 |||| || || ||||| || | ||||| || ||||| || |||||| ||| || Sbjct 19043 AGCAATCTCGCACGAGGCCTCAAGAGCAGCGTGGTAAATGGTCTCGAAGATATGAGTGTT 18984 Query 111001 CATCTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAAAATAAATACATCC 111055 | || ||| ||| | || ||||| |||| || | || || | || Sbjct 18983 GAGCTGGCGGGCCTCAGCCGACTCAAAGGGCATGCGCAGAGCCAGGAAGG-----CGTCG 18929 Query 111056 GCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGC---A 111112 || ||||| |||||||| | ||| || || | ||| ||||| || || || | Sbjct 18928 GCAAGACCCTGAACACCGACACCGATGGGACGGTGACGCATGTTGCTGTTATATGCTTCA 18869 Query 111113 GTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTT 111172 || ||| || || || || |||| ||||| || || ||||| ||| Sbjct 18868 GT---AACAGGGTAGTGGTTGACATCGATGATGCGGTTCAGGTTGCGAACAACAACCTTG 18812 Query 111173 GTGATTTCATGAAGTTTTTCATAATCAAAAG---TGCGAGTCTCTTCATTGACATACTTT 111229 |||| || || || || | |||| | | || || | ||| | | | Sbjct 18811 GTGACCTCGTGCAGCTTATGGAAATCGTACGAGTTGTTGGTGTAGTCAATAA---AGGCA 18755 Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 || ||||| | || || | ||||| ||||| |||||| | | ||| || | | Sbjct 18754 GGGAGGGCCAAAGAAGCAAGGTTGCAGACAGCAACCTCATCAGGAGCACAGTATTCAATA 18695 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 || || || || | |||||| || || || |||| ||||| ||||||||||| | Sbjct 18694 ATCTCAGTGCACAGGTTGGAGCTGCGGATAGTACCCAGGTTCTTCTGGTTACTCTTGCGG 18635 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 ||||| |||||||| |||||| | || | || ||||| ||||| | || || ||| Sbjct 18634 TTGCAGTGGTCCTTGTACAGCATGAACGGGTTACCAGTCTCAGTCTGAGCTTCCAGGATA 18575 Query 111410 GCCTTCCAAACATCGGCGGCTGGTACAATGGCGTTGGCC-CGTCCCTCCGCCTCGTACTT 111468 || | ||| | | |||| | | | || | || || |||||| || ||||| Sbjct 18574 GCATACCACAGCTTTTGGGCTTTGAGAGTCA-GTCGACCACGACCCTCCTTTTCATACTT 18516 Query 111469 TGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGG 111528 ||| | || || ||||| || || ||| | ||||| || || | || Sbjct 18515 CTCGTACAATGCCTCGAACTCATCGCCGTAACAGTCAGCCAGACCAGGGCACTCATTGGG 18456 Query 111529 ACAGAAAAGAGACCATT-GACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCC 111587 || | ||||| ||| | | | ||| ||||| |||||||||||||| || || |||| Sbjct 18455 GCACATAAGAGTCCACTCGGCGTTCTTT-TCAACACGCTTCATGAAAAGATCAGGGATCC 18397 Query 111588 ACAGGG--ATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTA 111644 |||| | | |||| ||||| | ||| || | ||||| | || || || || | Sbjct 18396 ACAGAGCCAGGAAA--AGATCACGGGCACGGA-CTTCTTCTTTGCCGTGATTCTTGCGGA 18340 Query 111645 ACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCT 111704 || |||||||| | | |||||||||||| ||||| || |||| || | || || Sbjct 18339 GATCGAGGAACTCAAAAACATCCGCGTGCCACGGCTCGAGGTAGATAGCAAAAGCACC-- 18282 Query 111705 TTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCA 111758 ||||| ||| | || | || || || || ||| ||| || || || |||| Sbjct 18281 -AGGACGCTTGTTGCCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCA 18223 Query 111759 TTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCA 111818 | |||| ||||| | || ||| || || || ||| ||| | |||| | | Sbjct 18222 TAGGAACGATACCGTTCGAGGTACCGTTAGTGCCGGCAATGTAAGAACCAGTGGCACGAA 18163 Query 111819 CATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGT 111876 || | || || |||||||| || ||| ||| ||||| | ||||| | | | Sbjct 18162 TGCGGTGCACGTTCAGGCCAATACCACCCGCCATCTTGGAGATCATAGCGCA-AGT-TTT 18105 Query 111877 AAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGA 111936 ||||| |||||||||| | || ||| ||||| | | | |||||||| || Sbjct 18104 CAGAGTGTCATAGATACCCTCAATGCTGTCATCCTTCATATCCACGAGGAAGCACGAAGA 18045 Query 111937 CATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACC 111996 || |||| || ||||| || ||||| || ||||| | ||| ||| ||| | | | Sbjct 18044 CAGTTGCGCCTGGGGAGTACCGGCGTTGAAAAGAGTTGGGGATGCATGAGTGA--AGAAC 17987 Query 111997 TTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCG 112054 ||| ||||| || ||| ||||||| |||| |||| || || || ||| || Sbjct 17986 TTGCTCGACATGAGGTTGTAGGTCTCCAGGACACGTTCAACATCATCACCCCAGATTCCA 17927 Query 112055 ATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA 112114 | || || ||||||| ||||| || || || | || |||| || ||| | Sbjct 17926 ACAGCAACACGCATGATCATGTGTTGAGGACGCTCGACGATCTTGCCGTCAAGCTTCAGG 17867 Query 112115 AGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 || || |||||| || |||| ||||||||| Sbjct 17866 AGGTATGAACGCTCAAGCGTCTTGAAACCAAAGTA 17832 >seq368 Length=24549 Score = 132 bits (146), Expect = 6e-26 Identities = 217/310 (70%), Gaps = 2/310 (1%) Strand=Plus/Minus Query 11629 CGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 11688 |||||||||||||||||| |||| |||||| || ||||| || || | |||| | Sbjct 8686 CGCATCAATCTCATCAATAAAGATAATACACGGCGCATTTTTCCGCGCTGTCGCAAACAA 8627 Query 11689 ATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG-C 11747 || || || | | || ||||||||||||||||||||||| | | ||||| | Sbjct 8626 GTCACGCACACGCGACGGCCCGACACCAACAAACATCTCCACAAACTCCGAACCAGAGAC 8567 Query 11748 ACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCG 11807 |||| | || || || || || ||||| |||| ||| || || |||||||||| Sbjct 8566 ACTGAAA-AACGGAACTCCGGACTCGCCCGCCGTGGCCTTGGCCAGCAGCGTCTTTCCCG 8508 Query 11808 TACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATATC 11867 |||| ||| |||| ||| | ||| || || ||||||||||||||| | | | | Sbjct 8507 TACCGGGCGGTCCCGAGAGGATGGCACCACGCGGGATCTTGGCACCAAGACGGACAAACT 8448 Query 11868 TCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCCGCGTCAATCC 11927 | ||||| | |||||| || | ||||| ||| || || | |||||| |||| || | Sbjct 8447 TTTCGGGCTTCTTGAGGAATTGCACAAACTCCATAATCTCCACCTTGGCCTCGTCCATAC 8388 Query 11928 CCTCAACATC 11937 | | ||||| Sbjct 8387 CGGCCACATC 8378 >seq85 Length=66049 Score = 113 bits (124), Expect = 6e-20 Identities = 307/459 (67%), Gaps = 22/459 (5%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| |||| |||||||| |||||||||||||| ||| |||| ||||| |||||| Sbjct 3498 TAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGCGAGATGTTCTCCATA 3439 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA---TGG-GTGGCACCCCAACTTGTTTGAGGAG 122486 |||||||| || || | || || | | || || || | | | ||||| Sbjct 3438 AAGTCAAAGGGGTTGCTGGCCTTGTAGACCTTGTCGTTGC----CGAGGGCCATCAGGAG 3383 Query 122487 ACGATCCGACACATACTCAATGTACTCGGACATCTTC---TCAGAGTTCATACCGATGAG 122543 ||| || | ||| | |||||||| || | || | || | |||||| || | || Sbjct 3382 ACGGTCGGCGACAAATTCAATGTA---GGTCTTCATGAGGTCGGCGTTCATGCCAAGCAG 3326 Query 122544 GTTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGAT 122603 | ||| || || || || | |||| | |||||||| |||| || || | | ||| Sbjct 3325 GGCACAGGGCAGGGCCTCAGTCAAGAACTCCTTCTCAATAGCAACAGCATCGGTGATGAT 3266 Query 122604 GGCGTGGAT-AGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGA--AGAGCTCCACGGC 122660 | | | || |||| | | |||| | || | ||| || ||||| || Sbjct 3265 GTCCTCAATCAGTTGCT-TGCTGGGGCGGTT--GTTAAGGTGGGAGTAGAGCAGGCAAGC 3209 Query 122661 AAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGG 122720 ||| || ||| || |||||||| ||||| || || || || |||||| ||||| || Sbjct 3208 AAAGTCAGTGTGAAGGCCCTCATCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCAGG 3149 Query 122721 CATGAGACCCCGCTTCTTCAACCAATAAATAGCG-CAGAATGACCCGGAGAAGAAGATAC 122779 ||||||||| ||||| || ||| | || | | || || ||||| |||||||||||| Sbjct 3148 CATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCAAAAGCACCCG-AGAAGAAGATAC 3090 Query 122780 CCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGG 122818 |||| ||| ||||| |||| || || | ||| |||| Sbjct 3089 CCTCGACAGCGGCAAAGGCAACGAGACGCTGGGCAAAGG 3051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628022132047200