Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq54 152 6e-32
seq368 132 6e-26
seq85 113 6e-20
>seq54
Length=76171
Score = 152 bits (168), Expect = 6e-32
Identities = 935/1475 (63%), Gaps = 59/1475 (4%)
Strand=Plus/Minus
Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765
|||| ||||| | ||||| || || |||||||| ||||| |||| || || | ||
Sbjct 19278 GGTAAATGTTGGAGGTGTAGGGCTCGAAGCATTCGTTATTGCCCAGAATCTGGGAAGTAC 19219
Query 110766 AGGCTGTTGGCATTGGTGCCATCA--AAAGACTGTTACGAAGACCCTTCTCCTTGATGCG 110823
||| || ||||| || || | | ||||| ||| || | ||| | || |||||| |
Sbjct 19218 TGGCGGTGGGCATGGGCGCAAGTAGTAAAGA--GTTGCGGATACCGTGCTGCTTGATCTG 19161
Query 110824 TTCCTTGAGAACATCCCAGTCGTAGTTGAG-CTTGGTTTCACCTTCCCACATGTCAAACT 110882
|||||| || |||||| || | || || | || |||| ||||||||||||
Sbjct 19160 TTCCTTCAGTGAGGTCCAGTCCCAGAGGTCACTGGGAGTGACATTCC-ACATGTCAAACT 19102
Query 110883 GAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAG 110942
| || | || |||||| | || || ||||| |||| || || | |||| |
Sbjct 19101 GCAGGATGCCCTGGGACACAGGCGAGCCCTCGTAGGTCGAGTACTTGCCCTC--CTTCTG 19044
Query 110943 C-CAAT-TCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATT 111000
|||| || || ||||| || | ||||| || ||||| || |||||| ||| ||
Sbjct 19043 AGCAATCTCGCACGAGGCCTCAAGAGCAGCGTGGTAAATGGTCTCGAAGATATGAGTGTT 18984
Query 111001 CATCTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAAAATAAATACATCC 111055
| || ||| ||| | || ||||| |||| || | || || | ||
Sbjct 18983 GAGCTGGCGGGCCTCAGCCGACTCAAAGGGCATGCGCAGAGCCAGGAAGG-----CGTCG 18929
Query 111056 GCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGC---A 111112
|| ||||| |||||||| | ||| || || | ||| ||||| || || || |
Sbjct 18928 GCAAGACCCTGAACACCGACACCGATGGGACGGTGACGCATGTTGCTGTTATATGCTTCA 18869
Query 111113 GTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTT 111172
|| ||| || || || || |||| ||||| || || ||||| |||
Sbjct 18868 GT---AACAGGGTAGTGGTTGACATCGATGATGCGGTTCAGGTTGCGAACAACAACCTTG 18812
Query 111173 GTGATTTCATGAAGTTTTTCATAATCAAAAG---TGCGAGTCTCTTCATTGACATACTTT 111229
|||| || || || || | |||| | | || || | ||| | | |
Sbjct 18811 GTGACCTCGTGCAGCTTATGGAAATCGTACGAGTTGTTGGTGTAGTCAATAA---AGGCA 18755
Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289
|| ||||| | || || | ||||| ||||| |||||| | | ||| || | |
Sbjct 18754 GGGAGGGCCAAAGAAGCAAGGTTGCAGACAGCAACCTCATCAGGAGCACAGTATTCAATA 18695
Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349
|| || || || | |||||| || || || |||| ||||| ||||||||||| |
Sbjct 18694 ATCTCAGTGCACAGGTTGGAGCTGCGGATAGTACCCAGGTTCTTCTGGTTACTCTTGCGG 18635
Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409
||||| |||||||| |||||| | || | || ||||| ||||| | || || |||
Sbjct 18634 TTGCAGTGGTCCTTGTACAGCATGAACGGGTTACCAGTCTCAGTCTGAGCTTCCAGGATA 18575
Query 111410 GCCTTCCAAACATCGGCGGCTGGTACAATGGCGTTGGCC-CGTCCCTCCGCCTCGTACTT 111468
|| | ||| | | |||| | | | || | || || |||||| || |||||
Sbjct 18574 GCATACCACAGCTTTTGGGCTTTGAGAGTCA-GTCGACCACGACCCTCCTTTTCATACTT 18516
Query 111469 TGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGG 111528
||| | || || ||||| || || ||| | ||||| || || | ||
Sbjct 18515 CTCGTACAATGCCTCGAACTCATCGCCGTAACAGTCAGCCAGACCAGGGCACTCATTGGG 18456
Query 111529 ACAGAAAAGAGACCATT-GACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCC 111587
|| | ||||| ||| | | | ||| ||||| |||||||||||||| || || ||||
Sbjct 18455 GCACATAAGAGTCCACTCGGCGTTCTTT-TCAACACGCTTCATGAAAAGATCAGGGATCC 18397
Query 111588 ACAGGG--ATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTA 111644
|||| | | |||| ||||| | ||| || | ||||| | || || || || |
Sbjct 18396 ACAGAGCCAGGAAA--AGATCACGGGCACGGA-CTTCTTCTTTGCCGTGATTCTTGCGGA 18340
Query 111645 ACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCT 111704
|| |||||||| | | |||||||||||| ||||| || |||| || | || ||
Sbjct 18339 GATCGAGGAACTCAAAAACATCCGCGTGCCACGGCTCGAGGTAGATAGCAAAAGCACC-- 18282
Query 111705 TTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCA 111758
||||| ||| | || | || || || || ||| ||| || || || ||||
Sbjct 18281 -AGGACGCTTGTTGCCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCA 18223
Query 111759 TTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCA 111818
| |||| ||||| | || ||| || || || ||| ||| | |||| | |
Sbjct 18222 TAGGAACGATACCGTTCGAGGTACCGTTAGTGCCGGCAATGTAAGAACCAGTGGCACGAA 18163
Query 111819 CATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGT 111876
|| | || || |||||||| || ||| ||| ||||| | ||||| | | |
Sbjct 18162 TGCGGTGCACGTTCAGGCCAATACCACCCGCCATCTTGGAGATCATAGCGCA-AGT-TTT 18105
Query 111877 AAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGA 111936
||||| |||||||||| | || ||| ||||| | | | |||||||| ||
Sbjct 18104 CAGAGTGTCATAGATACCCTCAATGCTGTCATCCTTCATATCCACGAGGAAGCACGAAGA 18045
Query 111937 CATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACC 111996
|| |||| || ||||| || ||||| || ||||| | ||| ||| ||| | | |
Sbjct 18044 CAGTTGCGCCTGGGGAGTACCGGCGTTGAAAAGAGTTGGGGATGCATGAGTGA--AGAAC 17987
Query 111997 TTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCG 112054
||| ||||| || ||| ||||||| |||| |||| || || || ||| ||
Sbjct 17986 TTGCTCGACATGAGGTTGTAGGTCTCCAGGACACGTTCAACATCATCACCCCAGATTCCA 17927
Query 112055 ATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA 112114
| || || ||||||| ||||| || || || | || |||| || ||| |
Sbjct 17926 ACAGCAACACGCATGATCATGTGTTGAGGACGCTCGACGATCTTGCCGTCAAGCTTCAGG 17867
Query 112115 AGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149
|| || |||||| || |||| |||||||||
Sbjct 17866 AGGTATGAACGCTCAAGCGTCTTGAAACCAAAGTA 17832
>seq368
Length=24549
Score = 132 bits (146), Expect = 6e-26
Identities = 217/310 (70%), Gaps = 2/310 (1%)
Strand=Plus/Minus
Query 11629 CGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 11688
|||||||||||||||||| |||| |||||| || ||||| || || | |||| |
Sbjct 8686 CGCATCAATCTCATCAATAAAGATAATACACGGCGCATTTTTCCGCGCTGTCGCAAACAA 8627
Query 11689 ATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG-C 11747
|| || || | | || ||||||||||||||||||||||| | | ||||| |
Sbjct 8626 GTCACGCACACGCGACGGCCCGACACCAACAAACATCTCCACAAACTCCGAACCAGAGAC 8567
Query 11748 ACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCG 11807
|||| | || || || || || ||||| |||| ||| || || ||||||||||
Sbjct 8566 ACTGAAA-AACGGAACTCCGGACTCGCCCGCCGTGGCCTTGGCCAGCAGCGTCTTTCCCG 8508
Query 11808 TACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATATC 11867
|||| ||| |||| ||| | ||| || || ||||||||||||||| | | | |
Sbjct 8507 TACCGGGCGGTCCCGAGAGGATGGCACCACGCGGGATCTTGGCACCAAGACGGACAAACT 8448
Query 11868 TCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCCGCGTCAATCC 11927
| ||||| | |||||| || | ||||| ||| || || | |||||| |||| || |
Sbjct 8447 TTTCGGGCTTCTTGAGGAATTGCACAAACTCCATAATCTCCACCTTGGCCTCGTCCATAC 8388
Query 11928 CCTCAACATC 11937
| | |||||
Sbjct 8387 CGGCCACATC 8378
>seq85
Length=66049
Score = 113 bits (124), Expect = 6e-20
Identities = 307/459 (67%), Gaps = 22/459 (5%)
Strand=Plus/Minus
Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430
||||| |||| |||||||| |||||||||||||| ||| |||| ||||| ||||||
Sbjct 3498 TAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGCGAGATGTTCTCCATA 3439
Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA---TGG-GTGGCACCCCAACTTGTTTGAGGAG 122486
|||||||| || || | || || | | || || || | | | |||||
Sbjct 3438 AAGTCAAAGGGGTTGCTGGCCTTGTAGACCTTGTCGTTGC----CGAGGGCCATCAGGAG 3383
Query 122487 ACGATCCGACACATACTCAATGTACTCGGACATCTTC---TCAGAGTTCATACCGATGAG 122543
||| || | ||| | |||||||| || | || | || | |||||| || | ||
Sbjct 3382 ACGGTCGGCGACAAATTCAATGTA---GGTCTTCATGAGGTCGGCGTTCATGCCAAGCAG 3326
Query 122544 GTTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGAT 122603
| ||| || || || || | |||| | |||||||| |||| || || | | |||
Sbjct 3325 GGCACAGGGCAGGGCCTCAGTCAAGAACTCCTTCTCAATAGCAACAGCATCGGTGATGAT 3266
Query 122604 GGCGTGGAT-AGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGA--AGAGCTCCACGGC 122660
| | | || |||| | | |||| | || | ||| || ||||| ||
Sbjct 3265 GTCCTCAATCAGTTGCT-TGCTGGGGCGGTT--GTTAAGGTGGGAGTAGAGCAGGCAAGC 3209
Query 122661 AAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGG 122720
||| || ||| || |||||||| ||||| || || || || |||||| ||||| ||
Sbjct 3208 AAAGTCAGTGTGAAGGCCCTCATCACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCAGG 3149
Query 122721 CATGAGACCCCGCTTCTTCAACCAATAAATAGCG-CAGAATGACCCGGAGAAGAAGATAC 122779
||||||||| ||||| || ||| | || | | || || ||||| ||||||||||||
Sbjct 3148 CATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCAAAAGCACCCG-AGAAGAAGATAC 3090
Query 122780 CCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGG 122818
|||| ||| ||||| |||| || || | ||| ||||
Sbjct 3089 CCTCGACAGCGGCAAAGGCAACGAGACGCTGGGCAAAGG 3051
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628022132047200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |